View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_high_32 (Length: 246)
Name: NF5932_high_32
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 13336193 - 13335953
Alignment:
| Q |
1 |
aaacaccaaaatcttgatgtctcttttgtaaacgatcaaccatatacatacaagaagggagtgtgatatttgggaatattctaacgaggataatgttgag |
100 |
Q |
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| T |
13336193 |
aaacaccaaaatcttgatgtctcttttgtaaacgatcaaccatatacatacaagaagggagtgtgatatttgggaatattctaacgaggataatgttgag |
13336094 |
T |
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| Q |
101 |
acaatatttgaaaaatcattgaaagtatcgttgccattgcaaaatgattgacctttaaatttaaattttactgctaatcataatcactctaaaacaaagt |
200 |
Q |
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| T |
13336093 |
aaaatatttgaaaaatcattgaaagtatcgttgccattgcaaaatgattgacctttaaatttaaattttactgctaatcataatcactctaaaacaaagt |
13335994 |
T |
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| Q |
201 |
ccatgaacaatagtgcaactctttgttgacaatggcctatg |
241 |
Q |
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| T |
13335993 |
ccatgaacaatagtgcaactctttgttgacaatggcctatg |
13335953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 13339531 - 13339284
Alignment:
| Q |
1 |
aaacaccaaaatcttgatgtctcttttgtaaacgatcaaccatatacatacaagaagggagtgtgatatttgggaatattctaacgaggataatgttgag |
100 |
Q |
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| T |
13339531 |
aaacaccaaaatcttgatgtttcttttgtaaacgatcaaccatatacatacaagaagggagtgtgatatttgggaatattataacgaggataatgttgag |
13339432 |
T |
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| Q |
101 |
acaatatttgaaaaatcattgaaagtatcg-------ttgccattgcaaaatgattgacctttaaatttaaattttactgctaatcataatcactctaaa |
193 |
Q |
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| T |
13339431 |
aaaatatttgaaaaatcattgaaagtattgttgccaattgccattgcaaaatgattgacctttaaatttaaattttactgctaatcataatcactctaaa |
13339332 |
T |
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| Q |
194 |
acaaagtccatgaacaatagtgcaactctttgttgacaatggcctatg |
241 |
Q |
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| T |
13339331 |
acaaagtccatgaacaatagtgcaactctttgttgacaatggcctatg |
13339284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 13345335 - 13345184
Alignment:
| Q |
1 |
aaacaccaaaatcttgatgtctcttttgtaaacgatcaaccatatacatacaagaagggag-tgtgatatttgggaatattctaacgaggataatgttga |
99 |
Q |
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|||| |||||||||| ||||||||||||||||| |||| |||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||| |
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| T |
13345335 |
aaactccaaaatcttcatgtctcttttgtaaaccatcagccatatacatacaagaaggggggtgtaatatttgggaatattccaacgaggataatgttga |
13345236 |
T |
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| Q |
100 |
gacaatatttgaaaaatcattgaaagtatc-gttgccattgcaaaatgattg |
150 |
Q |
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|| |||||||| || ||| ||||||||||| ||| ||||||||||||||||| |
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| T |
13345235 |
gaaaatatttgcaatatcgttgaaagtatcggttaccattgcaaaatgattg |
13345184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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