View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5932_high_34 (Length: 239)

Name: NF5932_high_34
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5932_high_34
NF5932_high_34
[»] chr3 (34 HSPs)
chr3 (7-239)||(4570078-4570310)
chr3 (118-235)||(54593834-54593951)
chr3 (115-213)||(31340142-31340240)
chr3 (116-235)||(6095521-6095637)
chr3 (115-217)||(46173504-46173606)
chr3 (115-217)||(30236272-30236373)
chr3 (115-227)||(47304389-47304505)
chr3 (115-235)||(46860604-46860722)
chr3 (115-217)||(55301892-55301992)
chr3 (115-235)||(41819442-41819561)
chr3 (45-107)||(6095390-6095448)
chr3 (45-89)||(54594042-54594086)
chr3 (45-107)||(55301758-55301818)
chr3 (45-107)||(43403530-43403588)
chr3 (115-235)||(43401717-43401839)
chr3 (115-235)||(49199385-49199507)
chr3 (150-217)||(36018996-36019062)
chr3 (197-235)||(801222-801260)
chr3 (197-235)||(3617580-3617618)
chr3 (197-235)||(6716629-6716667)
chr3 (197-235)||(7762395-7762433)
chr3 (197-235)||(9581412-9581450)
chr3 (197-235)||(23197939-23197977)
chr3 (197-235)||(23200138-23200176)
chr3 (197-235)||(54635254-54635292)
chr3 (202-235)||(4598528-4598561)
chr3 (202-235)||(10056349-10056382)
chr3 (202-235)||(10058571-10058604)
chr3 (202-235)||(10060793-10060826)
chr3 (202-235)||(10063015-10063048)
chr3 (202-235)||(10065237-10065270)
chr3 (202-235)||(10067436-10067469)
chr3 (202-235)||(10211525-10211558)
chr3 (202-235)||(25637557-25637590)
[»] chr8 (19 HSPs)
chr8 (105-235)||(42434901-42435029)
chr8 (115-235)||(18655530-18655650)
chr8 (115-217)||(10930118-10930220)
chr8 (115-231)||(4283658-4283771)
chr8 (115-235)||(11384115-11384232)
chr8 (112-232)||(3772325-3772442)
chr8 (115-217)||(40221892-40221992)
chr8 (110-214)||(2999718-2999820)
chr8 (45-107)||(42434779-42434839)
chr8 (115-219)||(40328921-40329023)
chr8 (45-107)||(11384304-11384366)
chr8 (197-235)||(17982783-17982821)
chr8 (197-235)||(25690084-25690122)
chr8 (197-235)||(31218387-31218425)
chr8 (197-235)||(42498324-42498362)
chr8 (202-235)||(2627866-2627899)
chr8 (202-235)||(15290654-15290687)
chr8 (202-235)||(15471023-15471056)
chr8 (202-235)||(42575329-42575362)
[»] chr4 (32 HSPs)
chr4 (105-235)||(50673757-50673885)
chr4 (107-235)||(8648269-8648394)
chr4 (105-233)||(26364368-26364494)
chr4 (107-235)||(8665538-8665663)
chr4 (105-235)||(41639556-41639683)
chr4 (115-234)||(6656087-6656203)
chr4 (115-231)||(35662575-35662688)
chr4 (115-234)||(12073523-12073640)
chr4 (115-217)||(40632592-40632692)
chr4 (115-235)||(379510-379628)
chr4 (115-194)||(55085362-55085439)
chr4 (115-235)||(41964546-41964661)
chr4 (119-217)||(54883167-54883265)
chr4 (115-217)||(27416886-27416986)
chr4 (150-235)||(46703631-46703715)
chr4 (111-235)||(50262613-50262739)
chr4 (43-107)||(2210038-2210098)
chr4 (115-210)||(33990000-33990093)
chr4 (45-107)||(40632765-40632825)
chr4 (115-233)||(26699362-26699478)
chr4 (107-164)||(46703748-46703804)
chr4 (45-107)||(50262487-50262544)
chr4 (195-235)||(29999804-29999844)
chr4 (186-233)||(24969797-24969843)
chr4 (197-235)||(8393524-8393562)
chr4 (197-235)||(8395733-8395771)
chr4 (197-235)||(31495316-31495354)
chr4 (197-235)||(56178637-56178675)
chr4 (202-235)||(5136195-5136228)
chr4 (202-235)||(5138420-5138453)
chr4 (45-107)||(21688562-21688620)
chr4 (45-107)||(41639744-41639801)
[»] chr5 (25 HSPs)
chr5 (105-231)||(5058179-5058303)
chr5 (116-235)||(213595-213715)
chr5 (115-217)||(27637533-27637633)
chr5 (105-217)||(27015670-27015779)
chr5 (115-235)||(40147391-40147508)
chr5 (171-235)||(16640915-16640978)
chr5 (44-107)||(38747296-38747354)
chr5 (186-233)||(16452212-16452258)
chr5 (197-235)||(9789224-9789262)
chr5 (197-235)||(10593388-10593426)
chr5 (197-235)||(16409605-16409643)
chr5 (197-235)||(22536290-22536328)
chr5 (197-235)||(25078251-25078289)
chr5 (197-235)||(25136220-25136258)
chr5 (197-235)||(26170892-26170930)
chr5 (197-235)||(26178012-26178050)
chr5 (60-107)||(28278607-28278650)
chr5 (197-235)||(29751160-29751198)
chr5 (197-235)||(37439271-37439309)
chr5 (197-235)||(40380221-40380259)
chr5 (197-235)||(40382432-40382470)
chr5 (186-235)||(13239881-13239930)
chr5 (202-235)||(16544539-16544572)
chr5 (202-235)||(16546761-16546794)
chr5 (186-235)||(28278446-28278494)
[»] chr1 (31 HSPs)
chr1 (105-235)||(37168428-37168555)
chr1 (115-235)||(11348828-11348948)
chr1 (116-235)||(13548922-13549038)
chr1 (105-232)||(7482141-7482265)
chr1 (125-235)||(13547020-13547127)
chr1 (115-235)||(47255257-47255378)
chr1 (105-190)||(34603737-34603820)
chr1 (45-107)||(13548792-13548852)
chr1 (126-235)||(193741-193849)
chr1 (115-231)||(31925627-31925741)
chr1 (115-235)||(29136377-29136495)
chr1 (115-235)||(47115302-47115420)
chr1 (115-213)||(37876687-37876783)
chr1 (150-235)||(28242434-28242518)
chr1 (45-107)||(11349020-11349080)
chr1 (119-217)||(19754642-19754737)
chr1 (64-107)||(37876573-37876614)
chr1 (61-107)||(13546901-13546945)
chr1 (47-105)||(37032860-37032915)
chr1 (197-235)||(8550787-8550825)
chr1 (197-235)||(9987331-9987369)
chr1 (148-217)||(12318475-12318544)
chr1 (197-235)||(13316352-13316390)
chr1 (45-87)||(19752991-19753032)
chr1 (197-235)||(20622237-20622275)
chr1 (197-235)||(40282507-40282545)
chr1 (197-235)||(44203762-44203800)
chr1 (197-234)||(3189461-3189498)
chr1 (197-234)||(3198278-3198315)
chr1 (197-234)||(3207117-3207154)
chr1 (202-235)||(21054088-21054121)
[»] chr6 (28 HSPs)
chr6 (115-235)||(26830041-26830161)
chr6 (107-217)||(5043775-5043883)
chr6 (115-235)||(17763120-17763239)
chr6 (115-235)||(21589061-21589178)
chr6 (115-231)||(17758157-17758272)
chr6 (171-235)||(21593794-21593857)
chr6 (115-235)||(26800717-26800835)
chr6 (45-107)||(26829909-26829969)
chr6 (45-107)||(17758344-17758402)
chr6 (45-107)||(21589250-21589308)
chr6 (150-217)||(22424780-22424846)
chr6 (115-217)||(603005-603109)
chr6 (45-107)||(17763311-17763369)
chr6 (197-235)||(412232-412270)
chr6 (197-235)||(2171532-2171570)
chr6 (197-235)||(3072759-3072797)
chr6 (197-235)||(6097451-6097489)
chr6 (197-235)||(16452329-16452367)
chr6 (197-235)||(16578518-16578556)
chr6 (197-235)||(16616824-16616862)
chr6 (197-235)||(16653242-16653280)
chr6 (197-235)||(25421436-25421474)
chr6 (197-235)||(34167210-34167248)
chr6 (202-235)||(13154045-13154078)
chr6 (202-235)||(30834541-30834574)
chr6 (202-235)||(33342110-33342143)
chr6 (202-235)||(34164988-34165021)
chr6 (175-231)||(2972918-2972973)
[»] chr2 (17 HSPs)
chr2 (105-235)||(35446795-35446922)
chr2 (105-235)||(1631645-1631770)
chr2 (116-235)||(45727059-45727173)
chr2 (115-217)||(42288031-42288132)
chr2 (115-235)||(33648302-33648420)
chr2 (46-107)||(45727247-45727305)
chr2 (115-232)||(17450710-17450824)
chr2 (45-107)||(35446677-35446736)
chr2 (197-235)||(4503133-4503171)
chr2 (197-235)||(6266821-6266859)
chr2 (197-235)||(12647386-12647424)
chr2 (197-235)||(32289694-32289732)
chr2 (197-235)||(36205665-36205703)
chr2 (197-235)||(36988076-36988114)
chr2 (197-235)||(45099884-45099922)
chr2 (202-235)||(13656037-13656070)
chr2 (203-235)||(2334424-2334456)
[»] scaffold0176 (2 HSPs)
scaffold0176 (119-235)||(17927-18042)
scaffold0176 (45-87)||(17793-17835)
[»] chr7 (28 HSPs)
chr7 (115-235)||(34310635-34310754)
chr7 (105-217)||(48599245-48599355)
chr7 (115-217)||(6359870-6359973)
chr7 (115-232)||(4508627-4508741)
chr7 (119-235)||(32357979-32358092)
chr7 (120-235)||(3259125-3259237)
chr7 (115-235)||(8359236-8359354)
chr7 (112-231)||(4510466-4510582)
chr7 (112-231)||(4512308-4512424)
chr7 (115-235)||(29608867-29608985)
chr7 (115-217)||(22328310-22328410)
chr7 (45-107)||(4510339-4510396)
chr7 (45-107)||(4512181-4512238)
chr7 (44-87)||(41317237-41317279)
chr7 (197-235)||(6592340-6592378)
chr7 (197-235)||(6594558-6594596)
chr7 (197-235)||(18388760-18388798)
chr7 (197-235)||(18392196-18392234)
chr7 (197-235)||(23555170-23555208)
chr7 (197-235)||(24789971-24790009)
chr7 (197-235)||(29991183-29991221)
chr7 (197-235)||(35854044-35854082)
chr7 (197-235)||(39731499-39731537)
chr7 (202-235)||(1560671-1560704)
chr7 (115-164)||(2360897-2360945)
chr7 (186-235)||(22270103-22270151)
chr7 (45-107)||(30814713-30814770)
chr7 (203-235)||(25615983-25616015)
[»] scaffold0466 (2 HSPs)
scaffold0466 (115-231)||(7461-7574)
scaffold0466 (45-107)||(7644-7703)
[»] scaffold0236 (1 HSPs)
scaffold0236 (112-235)||(10619-10740)
[»] scaffold1519 (1 HSPs)
scaffold1519 (197-235)||(1045-1083)
[»] scaffold0565 (1 HSPs)
scaffold0565 (197-235)||(2604-2642)
[»] scaffold0491 (2 HSPs)
scaffold0491 (197-235)||(8735-8773)
scaffold0491 (197-235)||(11161-11199)
[»] scaffold0286 (1 HSPs)
scaffold0286 (197-235)||(11687-11725)
[»] scaffold0002 (1 HSPs)
scaffold0002 (197-235)||(434663-434701)
[»] scaffold0674 (1 HSPs)
scaffold0674 (202-235)||(3731-3764)
[»] scaffold0137 (1 HSPs)
scaffold0137 (202-235)||(6403-6436)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 4570310 - 4570078
Alignment:
Q  7 ggacatcatcagaatcacttaattgagttagaatcacctgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaag 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4570310 ggacaacatcagaatcacttaattgagttagaatcacctgttgtgaattctgaactcaaatttcacaccaatacaaattatatatgatgtgtggagcaag 4570211  T
Q  107 tctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgaccca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4570210 tctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgaccca 4570111  T
Q  207 gttcggtccaaacttcacctactctggagtaga 239  Q
    |||||||||||||||||||||||||||||||||    
T  4570110 gttcggtccaaacttcacctactctggagtaga 4570078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 54593951 - 54593834
Alignment:
Q  118 gtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggag-caaaagaaaatataacaacaccaagaaatgttgacccagttcggtcca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||| |||||||| |||||     
T  54593951 gtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagactaaagaaaagataacaacaccaagaaatgttcacccagtttggtcc- 54593853  T
Q  217 aacttcacctactctggag 235  Q
    ||||| || ||||||||||    
T  54593852 aacttgacatactctggag 54593834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 31340142 - 31340240
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaag-aaatgttgacccagttcggt 213  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||  |||||||||||| |||||||||||||| ||||||||||||||||||||    
T  31340142 caagtgcatagcaaaaccacaatccaact-aaggaataaacaagataaagaaagcaaaagaaaagataacaacaccaagaaaatgttgacccagttcggt 31340240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 235
Target Start/End: Original strand, 6095521 - 6095637
Alignment:
Q  116 aagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtcc 215  Q
    ||||| ||||||||||||||||||||  ||||| ||||||||||||||| ||| ||| ||||| ||||||||||||||||||||| || |||||||||||    
T  6095521 aagtgtatagcaaaaccacaatccaac-caaggcataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcacacagttcggtcc 6095618  T
Q  216 aaacttcacctactctggag 235  Q
     ||||| |||||||||||||    
T  6095619 -aacttgacctactctggag 6095637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 46173606 - 46173504
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaa-tgttgacccagttcggt 213  Q
    |||||||||||||||||||||||||||   ||| ||||||||||||||||  |||||||||||| ||||||||||||||||| |||||| | ||||||||    
T  46173606 caagtgcatagcaaaaccacaatccaact-aagaaataaacaagataaagaaagcaaaagaaaagataacaacaccaagaaattgttgatctagttcggt 46173508  T
Q  214 ccaa 217  Q
    ||||    
T  46173507 ccaa 46173504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 30236373 - 30236272
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaa-tgttgacccagttcggt 213  Q
    |||||||||| ||||| ||||||||||  ||||| ||||||||||||||| ||| ||| ||||| ||||||||||||||||| |||||||| ||||||||    
T  30236373 caagtgcataacaaaaacacaatccaac-caaggtataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaattgttgacctagttcggt 30236276  T
Q  214 ccaa 217  Q
    ||||    
T  30236275 ccaa 30236272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 47304505 - 47304389
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagc-----aaaagaaaatataacaacaccaagaaa-tgttgacccagt 208  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||||||  |||     ||||||||| ||||||||||||| ||| ||||||||||||    
T  47304505 caagtgcatagcaaaaccacaatcc-aactaaggaataaacaagataaagaaagcaaaagaaaagaaaagataacaacaccaataaattgttgacccagt 47304407  T
Q  209 tcggtccaaacttcaccta 227  Q
    ||||| ||||||| |||||    
T  47304406 tcggt-caaacttgaccta 47304389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 46860722 - 46860604
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||| ||   ||||| |||||||||||||| ||| ||| ||||| ||||||||||||| ||||||| | ||| |||||||    
T  46860722 caagtgcatagcaaaaccacaatctaaccaaagga-taaacaagataaagagagtaaa-gaaaagataacaacaccaaaaaatgttcatccaattcggtc 46860625  T
Q  215 caaacttcacctactctggag 235  Q
    |||   | |||||||||||||    
T  46860624 caacaatgacctactctggag 46860604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 55301892 - 55301992
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    ||||||||||||||| ||||||| |||   ||||| |||||||||||||| ||| ||| ||||| |||||||||| |||||||||| ||| |||||||||    
T  55301892 caagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaa-gaaaagataacaacactaagaaatgttcaccaagttcggtc 55301989  T
Q  215 caa 217  Q
    |||    
T  55301990 caa 55301992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 41819442 - 41819561
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||| ||   ||||| ||||||||||||||  || | |  |||| ||||||||||||| ||||||| |||||||| ||||    
T  41819442 caagtgcatagcaaaaccacaatctaaccaaagga-taaacaagataaagaaagtagagaaaaaaataacaacaccaataaatgttcacccagtttggtc 41819540  T
Q  215 caaacttcacctactctggag 235  Q
    |||   | |||||||||||||    
T  41819541 caacaatgacctactctggag 41819561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 6095390 - 6095448
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| | |||||||||||||||||||||||||    |||||||||||||||||||    
T  6095390 tgttgtgaattcgggactcaaatttcacaccaatacaaac----tatgatgtgtggagcaagt 6095448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 54594086 - 54594042
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatat 89  Q
    |||||||||||| | ||||||||||||||||||||||||||||||    
T  54594086 tgttgtgaattcgggactcaaatttcacaccaatacaaactatat 54594042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 55301758 - 55301818
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| | ||||||||||||||||||||||||   ||||||| |||||||||||||    
T  55301758 tgttgtgaattccggactcaaatttcacaccaatacaaa--ttatatgaggtgtggagcaagt 55301818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 43403530 - 43403588
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| | ||| |||||||||||||||||||||    |||||||||||||||||||    
T  43403530 tgttgtgaattccggactaaaatttcacaccaatacaaac----tatgatgtgtggagcaagt 43403588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 43401717 - 43401839
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaat--ataacaacaccaaga-aatgttgacccagttcg 211  Q
    |||||||||||||||| |||||| | || ||| | ||||||||||||||| ||| | |  |||||  | ||||||||||||| | |||| ||||||||||    
T  43401717 caagtgcatagcaaaatcacaat-ctaaccaaaggataaacaagataaagagagtagagaaaaatagacaacaacaccaagagattgttcacccagttcg 43401815  T
Q  212 gtccaaacttcacctactctggag 235  Q
    |||||| | | |||||||||||||    
T  43401816 gtccaaccatgacctactctggag 43401839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 49199385 - 49199507
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaat--ataacaacaccaaga-aatgttgacccagttcg 211  Q
    ||||||||||||||||||||||| | || ||| | ||||||||||||||| ||| | |  |||||  | ||||||||||||| | |||| ||||||||||    
T  49199385 caagtgcatagcaaaaccacaat-ctaaccaaaggataaacaagataaagagagtagagaaaaatagacaacaacaccaagagattgttcacccagttcg 49199483  T
Q  212 gtccaaacttcacctactctggag 235  Q
    |||||| | | ||||| |||||||    
T  49199484 gtccaaccatgacctagtctggag 49199507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 36019062 - 36018996
Alignment:
Q  150 ataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtccaa 217  Q
    ||||||||||||||| ||| | || |||| ||||||||||||| ||||||| | ||||||||||||||    
T  36019062 ataaacaagataaagagagtagaa-aaaagataacaacaccaaaaaatgttcatccagttcggtccaa 36018996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 801260 - 801222
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  801260 tgttcacccagttcggtccaaacttgacctactctggag 801222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 3617618 - 3617580
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  3617618 tgttcacccagttcggtccaaacttgacctactctggag 3617580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 6716667 - 6716629
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  6716667 tgttcacccagttcggtccaaacttgacctactctggag 6716629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 7762433 - 7762395
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  7762433 tgttcacccagttcggtccaaacttgacctactctggag 7762395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 9581450 - 9581412
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  9581450 tgttcacccagttcggtccaaacttgacctactctggag 9581412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 23197939 - 23197977
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  23197939 tgttcacccagttcggtccaaacttgacctactctggag 23197977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 23200138 - 23200176
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  23200138 tgttcacccagttcggtccaaacttgacctactctggag 23200176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 54635292 - 54635254
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  54635292 tgttcacccagttcggtccaaacttgacctactctggag 54635254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 4598528 - 4598561
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  4598528 acccagttcggtccaaacttgacctactctggag 4598561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 10056382 - 10056349
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  10056382 acccagttcggtccaaacttgacctactctggag 10056349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 10058604 - 10058571
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  10058604 acccagttcggtccaaacttgacctactctggag 10058571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 10060826 - 10060793
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  10060826 acccagttcggtccaaacttgacctactctggag 10060793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 10063048 - 10063015
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  10063048 acccagttcggtccaaacttgacctactctggag 10063015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 10065270 - 10065237
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  10065270 acccagttcggtccaaacttgacctactctggag 10065237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 10067469 - 10067436
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  10067469 acccagttcggtccaaacttgacctactctggag 10067436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 10211558 - 10211525
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  10211558 acccagttcggtccaaacttgacctactctggag 10211525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 25637590 - 25637557
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  25637590 acccagttcggtccaaacttgacctactctggag 25637557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 42434901 - 42435029
Alignment:
Q  105 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||| ||||||||||||||||||||| |||    
T  42434901 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagaaag-taaagaaaagataacaacaccaagaaatgttcacc 42434999  T
Q  205 cagttcggtccaaacttcacctactctggag 235  Q
    ||||||||||| ||||| |||||||||||||    
T  42435000 cagttcggtcc-aacttgacctactctggag 42435029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 18655650 - 18655530
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggag-caaaagaaaatataacaacaccaagaaatgttgacccagttcggt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||| ||||||||||||| ||||||| ||||||||||||    
T  18655650 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaagataacaacaccaaaaaatgttcacccagttcggt 18655551  T
Q  214 ccaaacttcacctactctggag 235  Q
    || ||||| ||||||| |||||    
T  18655550 cc-aacttgacctactttggag 18655530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 10930118 - 10930220
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaa-tgttgacccagttcggt 213  Q
    |||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  10930118 caagtgcatagcaaaaccacaatccaacaaaag-aataaacaagataaagggagcaaaagaaaagataacaacaccaagaaattgttgacccagttcggt 10930216  T
Q  214 ccaa 217  Q
    ||||    
T  10930217 ccaa 10930220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 4283771 - 4283658
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    ||||||||||||||||||||||| |||   ||||| |||||||||||||| ||| ||| ||||| ||||||||||||||||||||| |||||||||||||    
T  4283771 caagtgcatagcaaaaccacaattcaaccaaagga-taaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcacccagttcggtc 4283674  T
Q  215 caaacttcacctactct 231  Q
    | ||||| |||||||||    
T  4283673 c-aacttgacctactct 4283658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 11384232 - 11384115
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||| ||   ||||| |||||||||||||| ||| |||  |||||| | ||||||||| ||||||| |||||||||||||    
T  11384232 caagtgcatagcaaaaccacaatctaaccaaagga-taaacaagataaagagagtaaagaaaaataga-caacaccaaaaaatgttcacccagttcggtc 11384135  T
Q  215 caaacttcacctactctggag 235  Q
    | ||||| |||||||||||||    
T  11384134 c-aacttaacctactctggag 11384115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 3772442 - 3772325
Alignment:
Q  112 aatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcg 211  Q
    |||||||||||||||||||||||||| | || ||| ||||||||||||||||| |||  | |||||| |||||| ||||||||||| || | |||||| |    
T  3772442 aatcaagtgcatagcaaaaccacaat-ctaaccaaagaataaacaagataaagagag-tagagaaaagataacaccaccaagaaatatttatccagtttg 3772345  T
Q  212 gtccaaacttcacctactctg 232  Q
    |||| ||||| ||||||||||    
T  3772344 gtcc-aacttgacctactctg 3772325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 40221992 - 40221892
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    ||||||||||||||||||||||||| || ||| |||| |||||||||||| |||  ||||| || |||||||||||||  | | ||||||||||||||||    
T  40221992 caagtgcatagcaaaaccacaatcc-aaccaaagaatgaacaagataaagagag-taaagacaagataacaacaccaaagattattgacccagttcggtc 40221895  T
Q  215 caa 217  Q
    |||    
T  40221894 caa 40221892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 2999718 - 2999820
Alignment:
Q  110 ataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagtt 209  Q
    ||||||||||||||||||||| |||||| | || ||| ||||||||||||||||| |||  | |||||| ||| ||||| ||||||||||| || |||||    
T  2999718 ataatcaagtgcatagcaaaatcacaat-ctaaccaaagaataaacaagataaagagag-tagagaaaagatatcaacatcaagaaatgtttactcagtt 2999815  T
Q  210 cggtc 214  Q
    |||||    
T  2999816 cggtc 2999820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 42434779 - 42434839
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||  |||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  42434779 tgttgtgaatttggaactcaaatttcacaccaatacaaac--tatatgatgtgaggagcaagt 42434839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 40329023 - 40328921
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||| ||   ||||| ||||||||| || | ||| | | ||||| ||||||||||||||||||||| || |||||| |||    
T  40329023 caagtgcatagcaaaaccacaatctaaccaaagga-taaacaagaaaaggagagtaga-gaaaagataacaacaccaagaaatgttcactcagttccgtc 40328926  T
Q  215 caaac 219  Q
    |||||    
T  40328925 caaac 40328921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 11384366 - 11384304
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    ||||||||| |||| |||||||||||||||||||| | |   |||||||||||||||| ||||    
T  11384366 tgttgtgaactctggactcaaatttcacaccaatatacaaattatatgatgtgtggagtaagt 11384304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 17982821 - 17982783
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  17982821 tgttcacccagttcggtccaaacttgacctactctggag 17982783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 25690122 - 25690084
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  25690122 tgttcacccagttcggtccaaacttgacctactctggag 25690084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 31218425 - 31218387
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  31218425 tgttcacccagttcggtccaaacttgacctactctggag 31218387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 42498362 - 42498324
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  42498362 tgttcacccagttcggtccaaacttgacctactctggag 42498324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 2627899 - 2627866
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  2627899 acccagttcggtccaaacttgacctactctggag 2627866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 15290687 - 15290654
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  15290687 acccagttcggtccaaacttgacctactctggag 15290654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 15471056 - 15471023
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  15471056 acccagttcggtccaaacttgacctactctggag 15471023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 42575329 - 42575362
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  42575329 acccagttcggtccaaacttgacctactctggag 42575362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 50673757 - 50673885
Alignment:
Q  105 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| ||||||||||||||||||||| |||    
T  50673757 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagag-taaagaaaagataacaacaccaagaaatgttcacc 50673855  T
Q  205 cagttcggtccaaacttcacctactctggag 235  Q
     |||||||||| ||||| |||||||||||||    
T  50673856 tagttcggtcc-aacttgacctactctggag 50673885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 8648394 - 8648269
Alignment:
Q  107 tctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgaccca 206  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||| |||||    
T  8648394 tctataatcaaatgcatagcaaaaccacaatccaac-caaggaataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcaccca 8648297  T
Q  207 gttcggtccaaacttcacctactctggag 235  Q
    ||| ||||| ||||| |||||||||||||    
T  8648296 gtttggtcc-aacttgacctactctggag 8648269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 233
Target Start/End: Complemental strand, 26364494 - 26364368
Alignment:
Q  105 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaa-tgttgac 203  Q
    |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |||  |||||||| ||||||||||||||||| |||||||    
T  26364494 agtctataattaagtgtatagcaaaaccacaatcc-aagcaaggaataaacaagataaagagag-taaagaaaagataacaacaccaagaaattgttgac 26364397  T
Q  204 ccagttcggtccaaacttcacctactctgg 233  Q
    ||||||| || ||||||| ||||| |||||    
T  26364396 ccagttcagt-caaacttgacctaatctgg 26364368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 8665663 - 8665538
Alignment:
Q  107 tctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgaccca 206  Q
    ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |||  |||||||| ||||||||||||||||||||  ||| |    
T  8665663 tctataatcaaatgcatagcaaaaccacaatcc-aaccaaggaataaacaagataaagagag-taaagaaaagataacaacaccaagaaatgtacaccta 8665566  T
Q  207 gttcggtccaaacttcacctactctggag 235  Q
    ||| ||||| ||||| |||||||||||||    
T  8665565 gtttggtcc-aacttgacctactctggag 8665538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 41639683 - 41639556
Alignment:
Q  105 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacc 204  Q
    ||||||||||||||||||||||||||||||||| | || ||| | ||||||||||||||| |||  |||||||  ||||||||||||||||||||| ||     
T  41639683 agtctataatcaagtgcatagcaaaaccacaattc-aaccaaaggataaacaagataaagagag-taaagaaacgataacaacaccaagaaatgttcact 41639586  T
Q  205 cagttcggtccaaacttcacctactctggag 235  Q
    ||||||||||| ||||| |||||||||||||    
T  41639585 cagttcggtcc-aacttgacctactctggag 41639556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 6656203 - 6656087
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||||||   ||||| |||||||||||||| ||| ||| ||||| ||||||||||||||||||||| ||||| |||||||    
T  6656203 caagtgcatagcaaaaccacaatccaacaaaagga-taaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcacccaattcggtc 6656106  T
Q  215 caaacttcacctactctgga 234  Q
    | ||||| ||||||||||||    
T  6656105 c-aacttgacctactctgga 6656087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 35662688 - 35662575
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||| ||| ||| ||||| ||||||||||||| ||||||| |  ||||||||||    
T  35662688 caagtgcatagcaaaaccacaatccaac-caaggaataaacaagataaagagagtaaa-gaaaagataacaacaccaaaaaatgttcattcagttcggtc 35662591  T
Q  215 caaacttcacctactct 231  Q
    | ||||| |||||||||    
T  35662590 c-aacttgacctactct 35662575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 12073640 - 12073523
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||| ||||||||||||| ||  ||| ||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||| ||| |||||||||    
T  12073640 caagtgcataacaaaaccacaatctaac-caaagaataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcacctagttcggtc 12073543  T
Q  215 caaacttcacctactctgga 234  Q
    |||   | ||||||||||||    
T  12073542 caacaatgacctactctgga 12073523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 40632692 - 40632592
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    ||||||||| ||||||||||||| |||   ||||| |||||||||||||| ||| |||| |||| ||||||||||||||||||||| |||||||||||||    
T  40632692 caagtgcatggcaaaaccacaattcaaccaaagga-taaacaagataaagagagtaaaa-aaaagataacaacaccaagaaatgtttacccagttcggtc 40632595  T
Q  215 caa 217  Q
    |||    
T  40632594 caa 40632592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 379628 - 379510
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||| ||||||||||||| ||   ||||| |||||||||||||| ||| ||| ||||| ||||||||||||||||||||| | |||||||||||    
T  379628 caagtgcataacaaaaccacaatctaaccaaagga-taaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcatccagttcggtc 379531  T
Q  215 caaacttcacctactctggag 235  Q
    |||   | |||||||||||||    
T  379530 caacaatgacctactctggag 379510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 55085362 - 55085439
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaaga 194  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||| |||  |||||||| |||||||||||||||    
T  55085362 caagtgcatagcaaaaccacaatcc-aaccaaggaataaacaagataaagagag-taaagaaaagataacaacaccaaga 55085439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 41964661 - 41964546
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||| ||   ||||| ||||||||||| || |    |||||||| ||||||||||||||||||| | |||||||||||||    
T  41964661 caagtgcatagcaaaaccacaatctaaccaaagga-taaacaagatagagagt---aaagaaaagataacaacaccaagaaatgctcacccagttcggtc 41964566  T
Q  215 caaacttcacctactctggag 235  Q
    | ||||| |||||||||||||    
T  41964565 c-aacttgacctactctggag 41964546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 54883265 - 54883167
Alignment:
Q  119 tgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaa-tgttgacccagttcggtccaa 217  Q
    |||| |||||||||||||| |||  ||| ||||||| ||||||||| ||| |||  |||| ||||||||||||||||| |||||||||||||||||||||    
T  54883265 tgcagagcaaaaccacaattcaac-caaagaataaataagataaagagagtaaagaaaaagataacaacaccaagaaattgttgacccagttcggtccaa 54883167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 27416886 - 27416986
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    ||||||||| ||||||||||||||| || ||| ||||||||||||||||| |||  ||||| || |||||||||||||  | ||||||| ||||||||||    
T  27416886 caagtgcatggcaaaaccacaatcc-aaccaaagaataaacaagataaagagag-taaagacaagataacaacaccaaagattgttgactcagttcggtc 27416983  T
Q  215 caa 217  Q
    |||    
T  27416984 caa 27416986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 46703715 - 46703631
Alignment:
Q  150 ataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtccaaacttcacctactctggag 235  Q
    ||||||||||||||| ||| ||| ||||| ||||||||||||||||||||| ||||| ||||||||||   | |||||||||||||    
T  46703715 ataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcacccaattcggtccaacaatgacctactctggag 46703631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 50262613 - 50262739
Alignment:
Q  111 taatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaat--ataacaacaccaaga-aatgttgacccag 207  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||||||||||  ||| | |  |||||  | ||||||||||||| | |||| ||||||    
T  50262613 taatcaagtgcatggcaaaaccacaatcc-aagtaaggaataaacaagataaaaagagtagagaaaaatagacaacaacaccaagagattgttcacccag 50262711  T
Q  208 ttcggtccaaacttcacctactctggag 235  Q
    ||||||||||   | |||||||||||||    
T  50262712 ttcggtccaacaatgacctactctggag 50262739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 2210098 - 2210038
Alignment:
Q  43 cctgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||| ||||| | |||||||||||||||||||||||||    |||||||||||||||||||    
T  2210098 cctgttgttaattccggactcaaatttcacaccaatacaaac----tatgatgtgtggagcaagt 2210038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 33990093 - 33990000
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttc 210  Q
    ||||||||||||||| ||| |||  ||  ||| ||||||||||||||||| ||| | || ||||||||| |||||||||||||||| |||||||||    
T  33990093 caagtgcatagcaaatccagaattgaac-caaagaataaacaagataaagagagtagaa-aaaatataataacaccaagaaatgtttacccagttc 33990000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 40632825 - 40632765
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| | ||||||||| ||||||||||||||||  ||||||||||| ||||||||    
T  40632825 tgttgtgaattccggactcaaattacacaccaatacaaact--atatgatgtgtagagcaagt 40632765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 26699362 - 26699478
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    ||||||||||||||||||| |||  ||  ||| ||||||||||||||||| ||| ||| ||||| |||||  ||| ||||||| || |||||||||||||    
T  26699362 caagtgcatagcaaaaccataattgaac-caaagaataaacaagataaagagagtaaa-gaaaagataacggcactaagaaatttttacccagttcggtc 26699459  T
Q  215 caaacttcacctactctgg 233  Q
    |||   | |||||||||||    
T  26699460 caacaatgacctactctgg 26699478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 46703804 - 46703748
Alignment:
Q  107 tctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaag 164  Q
    ||||||||||||||||||||||||||||||| | || ||| | |||||||||||||||    
T  46703804 tctataatcaagtgcatagcaaaaccacaat-ctaaccaaaggataaacaagataaag 46703748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 50262487 - 50262544
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| || ||||||||||||||||||||||||    |||||||||||||||||||    
T  50262487 tgttgtgaattcaga-ctcaaatttcacaccaatacaaac----tatgatgtgtggagcaagt 50262544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 29999804 - 29999844
Alignment:
Q  195 aatgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  29999804 aatgttcacccagttcggtccaaacttgacctactctggag 29999844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 24969843 - 24969797
Alignment:
Q  186 acaccaagaaatgttgacccagttcggtccaaacttcacctactctgg 233  Q
    ||||||||||||||| |||||||||||||| ||||| |||||||||||    
T  24969843 acaccaagaaatgtttacccagttcggtcc-aacttgacctactctgg 24969797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 8393562 - 8393524
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  8393562 tgttcacccagttcggtccaaacttgacctactctggag 8393524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 8395771 - 8395733
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  8395771 tgttcacccagttcggtccaaacttgacctactctggag 8395733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 31495316 - 31495354
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  31495316 tgttcacccagttcggtccaaacttgacctactctggag 31495354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 56178637 - 56178675
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  56178637 tgttcacccagttcggtccaaacttgacctactctggag 56178675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 5136228 - 5136195
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  5136228 acccagttcggtccaaacttgacctactctggag 5136195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 5138453 - 5138420
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  5138453 acccagttcggtccaaacttgacctactctggag 5138420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 21688620 - 21688562
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||  |||||||||||| |||| |||||||||    |||||||||||||||||||    
T  21688620 tgttgtgaatttcgaactcaaattttacactaatacaaac----tatgatgtgtggagcaagt 21688562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 41639801 - 41639744
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| || ||||||||||||| ||||||||||    |||||||||||||||||||    
T  41639801 tgttgtgaattcaga-ctcaaatttcacatcaatacaaac----tatgatgtgtggagcaagt 41639744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 5058303 - 5058179
Alignment:
Q  105 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacc 204  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||  |||||||| ||||||||||||||||||||| |||    
T  5058303 agtctataatcaagtgcatagtaaaaccataatccaaagcaaggaataaacaagataaagagag-taaagaaaagataacaacaccaagaaatgttcacc 5058205  T
Q  205 cagttcggtccaaacttcacctactct 231  Q
    ||||||||||| ||||| |||||||||    
T  5058204 cagttcggtcc-aacttgacctactct 5058179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 213715 - 213595
Alignment:
Q  116 aagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagca-aaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||   |||| ||| ||||||||||||||||||||| |||||||||||||    
T  213715 aagtgcatagcaaaaccacaatcaaaagcaaggaataaacaagataaagagagagtaaaggaaagataacaacaccaagaaatgttcacccagttcggtc 213616  T
Q  215 caaacttcacctactctggag 235  Q
    ||||||| ||||||| |||||    
T  213615 caaacttgacctactatggag 213595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 27637533 - 27637633
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||| ||| ||| ||||| |||||||||||||||||| || |||||||||||||    
T  27637533 caagtgcatagcaaaaccacaatccaact-aaggaataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatattcacccagttcggtc 27637630  T
Q  215 caa 217  Q
    |||    
T  27637631 caa 27637633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 27015779 - 27015670
Alignment:
Q  105 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacc 204  Q
    |||||||||||||||||||| |||||||||||| | || ||| | ||||||||||||||| |||  |||||||| ||||| ||||||| ||||||| |||    
T  27015779 agtctataatcaagtgcatatcaaaaccacaattc-aaccaaagcataaacaagataaagagag-taaagaaaaaataac-acaccaaaaaatgttcacc 27015683  T
Q  205 cagttcggtccaa 217  Q
    |||||||||||||    
T  27015682 cagttcggtccaa 27015670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 40147508 - 40147391
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||| |||||||||||| |||   ||||| |||||||||||||  ||| ||| ||||| |||| ||||| || ||||||| |||||||||||||    
T  40147508 caagtgcataacaaaaccacaattcaaccaaagga-taaacaagataaatagagtaaa-gaaaagataaaaacacaaaaaaatgttcacccagttcggtc 40147411  T
Q  215 caaacttcacctactctggag 235  Q
    | ||||| |||||||||||||    
T  40147410 c-aacttgacctactctggag 40147391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 16640915 - 16640978
Alignment:
Q  171 aaagaaaatataacaacaccaagaaatgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||||||| ||||||||||||||||||||| ||||||||||| ||  |||| |||||||||||||    
T  16640915 aaagaaaagataacaacaccaagaaatgtttacccagttcgg-ccctacttgacctactctggag 16640978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 38747354 - 38747296
Alignment:
Q  44 ctgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| || |||||||||||||||||||||||||    |||||||||||||||||||    
T  38747354 ctgttgtgaatt-tggactcaaatttcacaccaatacaaac----tatgatgtgtggagcaagt 38747296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 16452258 - 16452212
Alignment:
Q  186 acaccaagaaatgttgacccagttcggtccaaacttcacctactctgg 233  Q
    ||||||||||||||| |||||||||||||| ||||| |||||||||||    
T  16452258 acaccaagaaatgtttacccagttcggtcc-aacttgacctactctgg 16452212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 9789224 - 9789262
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  9789224 tgttcacccagttcggtccaaacttgacctactctggag 9789262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 10593426 - 10593388
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  10593426 tgttcacccagttcggtccaaacttgacctactctggag 10593388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 16409643 - 16409605
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  16409643 tgttcacccagttcggtccaaacttgacctactctggag 16409605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 22536290 - 22536328
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  22536290 tgttcacccagttcggtccaaacttgacctactctggag 22536328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 25078289 - 25078251
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  25078289 tgttcacccagttcggtccaaacttgacctactctggag 25078251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 25136258 - 25136220
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  25136258 tgttcacccagttcggtccaaacttgacctactctggag 25136220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 26170930 - 26170892
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  26170930 tgttcacccagttcggtccaaacttgacctactctggag 26170892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 26178050 - 26178012
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  26178050 tgttcacccagttcggtccaaacttgacctactctggag 26178012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 28278650 - 28278607
Alignment:
Q  60 actcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||    
T  28278650 actcaaatttcacaccaatacaaa----atatgatgtgtggagcaagt 28278607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 29751160 - 29751198
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  29751160 tgttcacccagttcggtccaaacttgacctactctggag 29751198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 37439309 - 37439271
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  37439309 tgttcacccagttcggtccaaacttgacctactctggag 37439271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 40380259 - 40380221
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  40380259 tgttcacccagttcggtccaaacttgacctactctggag 40380221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 40382470 - 40382432
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  40382470 tgttcacccagttcggtccaaacttgacctactctggag 40382432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 13239930 - 13239881
Alignment:
Q  186 acaccaagaaatgttgacccagttcggtccaaacttcacctactctggag 235  Q
    ||||||| || |||| ||||||||||||||||| || |||||||||||||    
T  13239930 acaccaaaaattgttcacccagttcggtccaaatttgacctactctggag 13239881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 16544572 - 16544539
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  16544572 acccagttcggtccaaacttgacctactctggag 16544539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 16546794 - 16546761
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  16546794 acccagttcggtccaaacttgacctactctggag 16546761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 28278494 - 28278446
Alignment:
Q  186 acaccaagaaatgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||| |||| |||||||||||||| ||||| |||||||||||||    
T  28278494 acaccaagaattgttcacccagttcggtcc-aacttgacctactctggag 28278446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 37168555 - 37168428
Alignment:
Q  105 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacc 204  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||| |||    
T  37168555 agtctataatcaagtgcatagcaaaaccacaatc-aaaccaaggaataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcacc 37168458  T
Q  205 cagttcggtccaaacttcacctactctggag 235  Q
    ||||||||||| ||||| |||||||||||||    
T  37168457 cagttcggtcc-aacttgacctactctggag 37168428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 11348948 - 11348828
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggag-caaaagaaaatataacaacaccaagaaatgttgacccagttcggt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||| ||||||||| ||||||||||| || |||||||||    
T  11348948 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaagataacaacatcaagaaatgttcactcagttcggt 11348849  T
Q  214 ccaaacttcacctactctggag 235  Q
    || ||||| |||||||||||||    
T  11348848 cc-aacttgacctactctggag 11348828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 235
Target Start/End: Original strand, 13548922 - 13549038
Alignment:
Q  116 aagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtcc 215  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  13548922 aagtgcatagcaaaaccacaatccaac-caaagaataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcacccagttcggtcc 13549019  T
Q  216 aaacttcacctactctggag 235  Q
     ||||| |||||||||||||    
T  13549020 -aacttgacctactctggag 13549038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 7482141 - 7482265
Alignment:
Q  105 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacc 204  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||  |||||||| || |||| |||| |||||||| |||    
T  7482141 agtctataatcaagtgcatagcaaaaccacaatcc-aaccaaggaataaacaagataaagagag-taaagaaaagatgacaataccatgaaatgttcacc 7482238  T
Q  205 cagttcggtccaaacttcacctactctg 232  Q
     |||||||||| ||||| ||||||||||    
T  7482239 tagttcggtcc-aacttgacctactctg 7482265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 13547020 - 13547127
Alignment:
Q  125 gcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtccaaacttcac 224  Q
    |||||||||||||||||  ||| ||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||| |||||||||||||| ||||| ||    
T  13547020 gcaaaaccacaatccaac-caaagaataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcacccagttcggtcc-aacttgac 13547116  T
Q  225 ctactctggag 235  Q
    |||||||||||    
T  13547117 ctactctggag 13547127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 47255257 - 47255378
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaata--taacaacaccaagaaatgttgacccagttcgg 212  Q
    |||||||||||||||||||||||| ||   ||||| |||||||||||||| ||| ||||||||| |  |||||||||||||||||||| |||||||||||    
T  47255257 caagtgcatagcaaaaccacaatctaaccaaagga-taaacaagataaagagagtaaaagaaaaaaaataacaacaccaagaaatgttcacccagttcgg 47255355  T
Q  213 tccaaacttcacctactctggag 235  Q
    |||||   | |||||||||||||    
T  47255356 tccaacaatgacctactctggag 47255378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 34603820 - 34603737
Alignment:
Q  105 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacacc 190  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||  |||||||| |||||||||||    
T  34603820 agtctataatcaagtgcatagcaaaaccacaatcc-aaccaaggaataaacaagataaagagag-taaagaaaagataacaacacc 34603737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 13548792 - 13548852
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  13548792 tgttgtgaattctgaactcaaatttcacaccaatacaaac--tatatgatgtgtggagcaagt 13548852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 193849 - 193741
Alignment:
Q  126 caaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataac-aacaccaagaaatgttgacccagttcggtccaaacttcac 224  Q
    ||||||||||||||||  ||||||||||||||||||||   ||||||||| || ||||| |||||||||||||||| |||||||||||||| ||||| ||    
T  193849 caaaaccacaatccaac-caaggaataaacaagataaataaagcaaaagagaagataacgaacaccaagaaatgttcacccagttcggtcc-aacttgac 193752  T
Q  225 ctactctggag 235  Q
     ||||||||||    
T  193751 atactctggag 193741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 31925627 - 31925741
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataa-acaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggt 213  Q
    |||||||||||||||||||||||||||  ||| |||||| ||||||||| | ||| ||| ||||| ||||||||||||||||||||| ||| ||||||||    
T  31925627 caagtgcatagcaaaaccacaatccaac-caaagaataatacaagataacgagagtaaa-gaaaaaataacaacaccaagaaatgttcacctagttcggt 31925724  T
Q  214 ccaaacttcacctactct 231  Q
    || ||||| |||||||||    
T  31925725 cc-aacttgacctactct 31925741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 29136495 - 29136377
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||| ||   ||||| |||||||||||||| ||| | |  |||||| | || |||||||||||||| ||| |||||||||    
T  29136495 caagtgcatagcaaaaccacaatctaaccaaagga-taaacaagataaagagagtagagaaaaataga-cagcaccaagaaatgttcacctagttcggtc 29136398  T
Q  215 caaacttcacctactctggag 235  Q
    ||||||| |||||||||||||    
T  29136397 caaacttgacctactctggag 29136377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 47115420 - 47115302
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||| ||||||||||||| ||   ||||| |||||||||||||  ||||| | ||||| ||||||||| ||||||||||| |||||||||||||    
T  47115420 caagtgcataacaaaaccacaatctaacaaaagga-taaacaagataaaaagagcaga-gaaaagataacaacatcaagaaatgttcacccagttcggtc 47115323  T
Q  215 caaacttcacctactctggag 235  Q
    |||   | |||||||||||||    
T  47115322 caacaatgacctactctggag 47115302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 37876687 - 37876783
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggt 213  Q
    ||||||||||| ||||||||||| | || |||   ||||||||||||||| |||  |||||||| ||||||||||||||||||||| ||||||||||||    
T  37876687 caagtgcatagaaaaaccacaattc-aaccaaatgataaacaagataaagagag-taaagaaaagataacaacaccaagaaatgttcacccagttcggt 37876783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 28242518 - 28242434
Alignment:
Q  150 ataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtccaaacttcacctactctggag 235  Q
    ||||||||||||||| ||| | | ||||| ||||||||||||||||||||| ||||||||||||||||   | |||||||||||||    
T  28242518 ataaacaagataaagagagtaga-gaaaagataacaacaccaagaaatgttcacccagttcggtccaacaatgacctactctggag 28242434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 11349080 - 11349020
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| | |||||||||| |||||||||||||||  ||||||||||||||||||||    
T  11349080 tgttgtgaattcgggactcaaattttacaccaatacaaact--atatgatgtgtggagcaagt 11349020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 19754737 - 19754642
Alignment:
Q  119 tgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtccaa 217  Q
    |||||||||||||||||||||||   |||| ||||||||||||||| |||  |||||||| ||||| ||||||| || |||||||||| ||||||||||    
T  19754737 tgcatagcaaaaccacaatccaacaaaagg-ataaacaagataaagagag-taaagaaaagataac-acaccaaaaattgttgacccacttcggtccaa 19754642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 37876573 - 37876614
Alignment:
Q  64 aaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||||||||||||  |||||||||||||||||||||    
T  37876573 aaatttcacaccaatacaaac--tatatgatgtgtggagcaagt 37876614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 13546901 - 13546945
Alignment:
Q  61 ctcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||| |||||||||||||||||||  |||||||||||||||    
T  13546901 ctcaaatttctcaccaatacaaactatata--atgtgtggagcaagt 13546945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 37032860 - 37032915
Alignment:
Q  47 ttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaa 105  Q
    |||||||||| || ||||||||||||| ||||||||||  |||||||||||||||||||    
T  37032860 ttgtgaattc-gatctcaaatttcacaacaatacaaac--tatatgatgtgtggagcaa 37032915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 8550787 - 8550825
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  8550787 tgttcacccagttcggtccaaacttgacctactctggag 8550825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 9987369 - 9987331
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  9987369 tgttcacccagttcggtccaaacttgacctactctggag 9987331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 12318475 - 12318544
Alignment:
Q  148 gaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaa-tgttgacccagttcggtccaa 217  Q
    |||||||||||||||||||||  |||||||| | ||||||||||| ||| |||| ||| ||||||||||||    
T  12318475 gaataaacaagataaagggag-taaagaaaagagaacaacaccaaaaaattgtttacctagttcggtccaa 12318544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 13316352 - 13316390
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  13316352 tgttcacccagttcggtccaaacttgacctactctggag 13316390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 19753032 - 19752991
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactat 87  Q
    |||||||||||| || |||||||||||||||||||||||||||    
T  19753032 tgttgtgaattcaga-ctcaaatttcacaccaatacaaactat 19752991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 20622237 - 20622275
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  20622237 tgttcacccagttcggtccaaacttgacctactctggag 20622275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 40282545 - 40282507
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  40282545 tgttcacccagttcggtccaaacttgacctactctggag 40282507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 44203800 - 44203762
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  44203800 tgttcacccagttcggtccaaacttgacctactctggag 44203762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 3189498 - 3189461
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctgga 234  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  3189498 tgttcacccagttcggtccaaacttgacctactctgga 3189461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 3198315 - 3198278
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctgga 234  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  3198315 tgttcacccagttcggtccaaacttgacctactctgga 3198278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 3207154 - 3207117
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctgga 234  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  3207154 tgttcacccagttcggtccaaacttgacctactctgga 3207117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 21054121 - 21054088
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  21054121 acccagttcggtccaaacttgacctactctggag 21054088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 26830041 - 26830161
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggag-caaaagaaaatataacaacaccaagaaatgttgacccagttcggt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||| ||||||||||||||||||||| ||||||||| ||    
T  26830041 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcagt 26830140  T
Q  214 ccaaacttcacctactctggag 235  Q
     ||||||| ||||||| |||||    
T  26830141 -caaacttgacctactttggag 26830161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 5043883 - 5043775
Alignment:
Q  107 tctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgaccca 206  Q
    |||||||||||||||||||||||||||||||||||  |||| |||||||||||||||| ||| ||| ||||| ||||||||||||||||||||| |||||    
T  5043883 tctataatcaagtgcatagcaaaaccacaatccaac-caagaaataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcaccca 5043786  T
Q  207 gttcggtccaa 217  Q
    |||||||||||    
T  5043785 gttcggtccaa 5043775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 17763239 - 17763120
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    ||||||||||||||||| |||||| ||   ||||| | |||||||||||| ||| ||||||||| ||||||||||||||||||||| ||| |||||||||    
T  17763239 caagtgcatagcaaaactacaatctaaccaaagga-tgaacaagataaagagagtaaaagaaaagataacaacaccaagaaatgttcacctagttcggtc 17763141  T
Q  215 caaacttcacctactctggag 235  Q
    ||||||| | |||||||||||    
T  17763140 caaacttgatctactctggag 17763120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 21589178 - 21589061
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||||||   |||||||||||||||||| |  || ||| ||||| ||||||||||||||||||||| |||||||||||||    
T  21589178 caagtgcatagcaaaaccacaatccaact-aaggaataaacaagataaggaaagtaaa-gaaaagataacaacaccaagaaatgttcacccagttcggtc 21589081  T
Q  215 caaacttcacctactctggag 235  Q
    | ||||| |||||||||||||    
T  21589080 c-aacttgacctactctggag 21589061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 17758272 - 17758157
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||| ||   ||||| |||||||||||||| | | ||||| ||| ||||||||||||||||||||| ||| |||||||||    
T  17758272 caagtgcatagcaaaaccacaatctaaccaaagga-taaacaagataaagagcgtaaaaggaaagataacaacaccaagaaatgttcacctagttcggtc 17758174  T
Q  215 caaacttcacctactct 231  Q
    ||||||| | |||||||    
T  17758173 caaacttgaactactct 17758157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 21593857 - 21593794
Alignment:
Q  171 aaagaaaatataacaacaccaagaaatgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  21593857 aaagaaaagataacaacaccaagaaatgttcacccagttcggtcc-aacttgacctactctggag 21593794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 26800835 - 26800717
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||| ||   || || |||||||||||||  ||| | | ||||| ||||||||||||||||||||| | |||||||||||    
T  26800835 caagtgcatagcaaaaccacaatctaaccaaaaga-taaacaagataaaaagagtaga-gaaaagataacaacaccaagaaatgttcatccagttcggtc 26800738  T
Q  215 caaacttcacctactctggag 235  Q
    |||   | |||||||||||||    
T  26800737 caacaatgacctactctggag 26800717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 26829909 - 26829969
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| |  ||||||||||||||||||||||||  |||||||||||||||||||||    
T  26829909 tgttgtgaattcggggctcaaatttcacaccaatacaaac--tatatgatgtgtggagcaagt 26829969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 17758402 - 17758344
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| | |||||||||||||||||||||||||    |||||||||||||||||||    
T  17758402 tgttgtgaattcgggactcaaatttcacaccaatacaaac----tatgatgtgtggagcaagt 17758344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 21589308 - 21589250
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||||| |||||||||||||||||||| ||||    |||||||||||||||||||    
T  21589308 tgttgtgaattctggactcaaatttcacaccaatataaac----tatgatgtgtggagcaagt 21589250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 22424780 - 22424846
Alignment:
Q  150 ataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtccaa 217  Q
    ||||||||||||||| ||| | | ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  22424780 ataaacaagataaagagagtaga-gaaaagataacaacaccaagaaatgttcacccagtacggtccaa 22424846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 603005 - 603109
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaat--ataacaacaccaaga-aatgttgacccagttcg 211  Q
    ||||||||||| ||||||||||||| || ||||| ||||||||||||||| ||| | |  |||||  | ||||||| ||||| | |||||||||||||||    
T  603005 caagtgcatagtaaaaccacaatcc-aaccaaggcataaacaagataaagagagtagagaaaaatagacaacaacatcaagagattgttgacccagttcg 603103  T
Q  212 gtccaa 217  Q
    ||||||    
T  603104 gtccaa 603109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 17763369 - 17763311
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| | |||||||||||||||||||| ||||    |||||||||||||||||||    
T  17763369 tgttgtgaattcgggactcaaatttcacaccaatataaac----tatgatgtgtggagcaagt 17763311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 412270 - 412232
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  412270 tgttcacccagttcggtccaaacttgacctactctggag 412232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 2171532 - 2171570
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  2171532 tgttcacccagttcggtccaaacttgacctactctggag 2171570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 3072759 - 3072797
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  3072759 tgttcacccagttcggtccaaacttgacctactctggag 3072797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 6097451 - 6097489
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  6097451 tgttcacccagttcggtccaaacttgacctactctggag 6097489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 16452329 - 16452367
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  16452329 tgttcacccagttcggtccaaacttgacctactctggag 16452367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 16578518 - 16578556
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  16578518 tgttcacccagttcggtccaaacttgacctactctggag 16578556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 16616862 - 16616824
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  16616862 tgttcacccagttcggtccaaacttgacctactctggag 16616824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 16653280 - 16653242
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  16653280 tgttcacccagttcggtccaaacttgacctactctggag 16653242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 25421474 - 25421436
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  25421474 tgttcacccagttcggtccaaacttgacctactctggag 25421436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 34167248 - 34167210
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  34167248 tgttcacccagttcggtccaaacttgacctactctggag 34167210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 13154078 - 13154045
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  13154078 acccagttcggtccaaacttgacctactctggag 13154045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 30834541 - 30834574
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  30834541 acccagttcggtccaaacttgacctactctggag 30834574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 33342110 - 33342143
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  33342110 acccagttcggtccaaacttgacctactctggag 33342143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 34165021 - 34164988
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  34165021 acccagttcggtccaaacttgacctactctggag 34164988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 2972918 - 2972973
Alignment:
Q  175 aaaatataacaacaccaagaaatgttgacccagttcggtccaaacttcacctactct 231  Q
    |||| ||||||||||||||||||||| ||| |||||||| | ||||| |||||||||    
T  2972918 aaaaaataacaacaccaagaaatgttcacctagttcggt-cgaacttgacctactct 2972973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 35446795 - 35446922
Alignment:
Q  105 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacc 204  Q
    ||||||||||||||||||||||||||||||||| |||  ||| | ||||||||||||||| ||| ||| ||||| ||||||||||||||||||||| |||    
T  35446795 agtctataatcaagtgcatagcaaaaccacaattcaac-caaagcataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcacc 35446892  T
Q  205 cagttcggtccaaacttcacctactctggag 235  Q
    ||||||||||| ||||| |||||||||||||    
T  35446893 cagttcggtcc-aacttgacctactctggag 35446922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 1631645 - 1631770
Alignment:
Q  105 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacc 204  Q
    ||||| |||||||||| ||||||||||||||||||||   |||||||||||||||||||| |||| || ||||| |||||||||| ||||||| || ||     
T  1631645 agtctgtaatcaagtgtatagcaaaaccacaatccaa---aaggaataaacaagataaagagagc-aaggaaaagataacaacactaagaaatattcact 1631740  T
Q  205 cagttcggtccaaacttcacctactctggag 235  Q
    ||||||||||| ||||| |||||||||||||    
T  1631741 cagttcggtcc-aacttgacctactctggag 1631770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 45727173 - 45727059
Alignment:
Q  116 aagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtcc 215  Q
    ||||||||||||||||||||||||||  ||| |||||||  |||||||| ||| ||| ||||| |||||||||| || ||||||| ||||||||||||||    
T  45727173 aagtgcatagcaaaaccacaatccaac-caaagaataaa--agataaagagagtaaa-gaaaagataacaacactaaaaaatgttcacccagttcggtcc 45727078  T
Q  216 aaacttcacctactctggag 235  Q
     ||||| |||||||||||||    
T  45727077 -aacttgacctactctggag 45727059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 42288031 - 42288132
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaa-tgttgacccagttcggt 213  Q
    ||||||||||| ||||||||||||| || ||||||||||||||| ||||| | |  |||||||| |||||| |||||||||| | |||||||||||||||    
T  42288031 caagtgcatagaaaaaccacaatcc-aaccaaggaataaacaagttaaagag-ggtaaagaaaagataacagcaccaagaaattattgacccagttcggt 42288128  T
Q  214 ccaa 217  Q
    ||||    
T  42288129 ccaa 42288132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 33648420 - 33648302
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||| ||||||  |||  || ||||||||||||||||| ||| | | ||||| | ||||||||||| ||||||| |||||||||||||    
T  33648420 caagtgcatagcaaaatcacaatt-aaactaaagaataaacaagataaagagagtaga-gaaaagacaacaacaccaataaatgtttacccagttcggtc 33648323  T
Q  215 caaacttcacctactctggag 235  Q
    |||   | |||||||||||||    
T  33648322 caacaatgacctactctggag 33648302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 45727305 - 45727247
Alignment:
Q  46 gttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    ||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||    
T  45727305 gttgtgaattcaga-ctcaaatttcacaccaatacaaact--atatgatgtgtggagcaagt 45727247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 17450824 - 17450710
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    ||||||||||||||||||||||| | || ||| | ||||||||||||||| |||  | |||||| |||||||||||||  | |||| ||| |||||||||    
T  17450824 caagtgcatagcaaaaccacaat-ctaaccaaaggataaacaagataaagagag-tacagaaaagataacaacaccaaagattgttcacctagttcggtc 17450727  T
Q  215 caaacttcacctactctg 232  Q
    | ||||| ||||||||||    
T  17450726 c-aacttgacctactctg 17450710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 35446677 - 35446736
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    ||||||||||||||| ||||||||||||| ||||| ||||  |||||||||||||||||||||    
T  35446677 tgttgtgaattctga-ctcaaatttcacatcaatataaac--tatatgatgtgtggagcaagt 35446736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 4503133 - 4503171
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  4503133 tgttcacccagttcggtccaaacttgacctactctggag 4503171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 6266859 - 6266821
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  6266859 tgttcacccagttcggtccaaacttgacctactctggag 6266821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 12647386 - 12647424
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  12647386 tgttcacccagttcggtccaaacttgacctactctggag 12647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 32289732 - 32289694
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  32289732 tgttcacccagttcggtccaaacttgacctactctggag 32289694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 36205665 - 36205703
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  36205665 tgttcacccagttcggtccaaacttgacctactctggag 36205703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 36988076 - 36988114
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  36988076 tgttcacccagttcggtccaaacttgacctactctggag 36988114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 45099922 - 45099884
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  45099922 tgttcacccagttcggtccaaacttgacctactctggag 45099884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 13656037 - 13656070
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  13656037 acccagttcggtccaaacttgacctactctggag 13656070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 2334424 - 2334456
Alignment:
Q  203 cccagttcggtccaaacttcacctactctggag 235  Q
    ||||||||||||||||||| |||||||||||||    
T  2334424 cccagttcggtccaaacttgacctactctggag 2334456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 17927 - 18042
Alignment:
Q  119 tgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtccaaa 218  Q
    |||||||||||||||||||| ||   |||||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||| |||||||||| ||||||    
T  17927 tgcatagcaaaaccacaatctaaccaaaggaataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcacccagttcgatccaaa 18025  T
Q  219 cttcacctactctggag 235  Q
    ||| |||||| ||||||    
T  18026 cttgacctaccctggag 18042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 17793 - 17835
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactat 87  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  17793 tgttatgaattctggactcaaatttcacaccaatacaaactat 17835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 34310635 - 34310754
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    ||||||||||||||||||||||| |||   |||||||||||||||||||| ||| ||| ||||| |||||||||||||  | |||| |||||||||||||    
T  34310635 caagtgcatagcaaaaccacaattcaaccaaaggaataaacaagataaagagagtaaa-gaaaagataacaacaccaaagattgttcacccagttcggtc 34310733  T
Q  215 caaacttcacctactctggag 235  Q
    ||||||| |||||||||||||    
T  34310734 caaacttgacctactctggag 34310754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 48599245 - 48599355
Alignment:
Q  105 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacc 204  Q
    |||||||||||||||||| |||||||| |||||||||  ||||||||||||||||||||| ||| ||| ||||| ||||||||| ||||||||||| |||    
T  48599245 agtctataatcaagtgcacagcaaaactacaatccaac-caaggaataaacaagataaagagagtaaa-gaaaagataacaacatcaagaaatgttcacc 48599342  T
Q  205 cagttcggtccaa 217  Q
    |||||||||||||    
T  48599343 cagttcggtccaa 48599355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 6359870 - 6359973
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaa-tgttgacccagttcggt 213  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||  |||||| ||||| ||||||||||||||||| ||||||||||||||| |    
T  6359870 caagtgcatagcaaaaccacaatccaacttaaggaataaacaagataaagaaagcaaatgaaaagataacaacaccaagaaattgttgacccagttcgat 6359969  T
Q  214 ccaa 217  Q
    ||||    
T  6359970 ccaa 6359973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 4508627 - 4508741
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    ||||||||||||||||||||||| |||   ||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||||||    
T  4508627 caagtgcatagcaaaaccacaattcaaccaaagga-taaacaagataaagagagtaaa-gaaaatataacaacaccaagaaatgttcacccagttcggtc 4508724  T
Q  215 caaacttcacctactctg 232  Q
    | ||||| ||||||||||    
T  4508725 c-aacttaacctactctg 4508741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 32357979 - 32358092
Alignment:
Q  119 tgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtccaaa 218  Q
    |||||| |||||||||||| ||| |||||||||||||||| ||||| ||| ||| ||||| ||||||||||||||||||||| |||||||||||||| ||    
T  32357979 tgcataacaaaaccacaattcaa-gcaaggaataaacaagttaaagagagtaaa-gaaaagataacaacaccaagaaatgttcacccagttcggtcc-aa 32358075  T
Q  219 cttcacctactctggag 235  Q
    ||| |||||||||||||    
T  32358076 cttgacctactctggag 32358092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 235
Target Start/End: Complemental strand, 3259237 - 3259125
Alignment:
Q  120 gcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtccaaac 219  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| ||| ||| ||||| |||||||||||| |||||||| |||||||||||| | |||    
T  3259237 gcatagcaaaaccacaatccaac-caaggaataaacaagataaagagagtaaa-gaaaagataacaacaccaggaaatgttcacccagttcggttc-aac 3259141  T
Q  220 ttcacctactctggag 235  Q
    || |||||||||||||    
T  3259140 ttgacctactctggag 3259125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 8359236 - 8359354
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||||||||||||||||| ||   ||||| |||||||||||| | ||| | | ||||| ||||||||||||||||||||| |||||||||||||    
T  8359236 caagtgcatagcaaaaccacaatctaaccaaagga-taaacaagataatgagagtaga-gaaaagataacaacaccaagaaatgttcacccagttcggtc 8359333  T
Q  215 caaacttcacctactctggag 235  Q
    |||   | |||||||||||||    
T  8359334 caacaatgacctactctggag 8359354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 4510466 - 4510582
Alignment:
Q  112 aatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcg 211  Q
    ||||||||||||||||||| |||||| | ||  || | ||||||||||| ||| |||  |||||||| ||||||||||||||||||||| ||||||| ||    
T  4510466 aatcaagtgcatagcaaaaacacaattc-aactaatggataaacaagatcaagagag-taaagaaaagataacaacaccaagaaatgttcacccagtacg 4510563  T
Q  212 gtccaaacttcacctactct 231  Q
    |||| ||||| |||||||||    
T  4510564 gtcc-aacttgacctactct 4510582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 4512308 - 4512424
Alignment:
Q  112 aatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcg 211  Q
    ||||||||||||||||||| |||||| | ||  || | ||||||||||| ||| |||  |||||||| ||||||||||||||||||||| ||||||| ||    
T  4512308 aatcaagtgcatagcaaaaacacaattc-aactaatggataaacaagatcaagagag-taaagaaaagataacaacaccaagaaatgttcacccagtacg 4512405  T
Q  212 gtccaaacttcacctactct 231  Q
    |||| ||||| |||||||||    
T  4512406 gtcc-aacttgacctactct 4512424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 29608985 - 29608867
Alignment:
Q  115 caagtgcatagcaaaa-ccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggt 213  Q
    |||||||||| ||||| |||||||| || |||| | ||||||||||||||| ||| | | ||||| |||||||||||||||||| || || |||||||||    
T  29608985 caagtgcatatcaaaaaccacaatctaa-gcaaaggataaacaagataaagagagtaga-gaaaagataacaacaccaagaaatattcactcagttcggt 29608888  T
Q  214 ccaaacttcacctactctggag 235  Q
    || ||||| |||||||||||||    
T  29608887 cc-aacttgacctactctggag 29608867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 22328310 - 22328410
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    |||||||||| ||||||||||||| ||   ||| |||||||||||||||| ||| | | ||||| ||||||||||||| |||| || |||||||||||||    
T  22328310 caagtgcataacaaaaccacaatcgaacaaaag-aataaacaagataaagagagtaga-gaaaagataacaacaccaaaaaatatttacccagttcggtc 22328407  T
Q  215 caa 217  Q
    |||    
T  22328408 caa 22328410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 4510339 - 4510396
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| || ||||||||||||||||||||||||    |||||||||||||||||||    
T  4510339 tgttgtgaattcgga-ctcaaatttcacaccaatacaaac----tatgatgtgtggagcaagt 4510396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 4512181 - 4512238
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| || ||||||||||||||||||||||||    |||||||||||||||||||    
T  4512181 tgttgtgaattcgga-ctcaaatttcacaccaatacaaac----tatgatgtgtggagcaagt 4512238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 41317237 - 41317279
Alignment:
Q  44 ctgttgtgaattctgaactcaaatttcacaccaatacaaactat 87  Q
    ||||||||||||| |||||||||| |||||||||||||||||||    
T  41317237 ctgttgtgaattc-gaactcaaatctcacaccaatacaaactat 41317279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 6592340 - 6592378
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  6592340 tgttcacccagttcggtccaaacttgacctactctggag 6592378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 6594558 - 6594596
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  6594558 tgttcacccagttcggtccaaacttgacctactctggag 6594596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 18388760 - 18388798
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  18388760 tgttcacccagttcggtccaaacttgacctactctggag 18388798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 18392196 - 18392234
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  18392196 tgttcacccagttcggtccaaacttgacctactctggag 18392234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 23555208 - 23555170
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  23555208 tgttcacccagttcggtccaaacttgacctactctggag 23555170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 24790009 - 24789971
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  24790009 tgttcacccagttcggtccaaacttgacctactctggag 24789971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 29991221 - 29991183
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  29991221 tgttcacccagttcggtccaaacttgacctactctggag 29991183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 35854082 - 35854044
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  35854082 tgttcacccagttcggtccaaacttgacctactctggag 35854044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 39731537 - 39731499
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  39731537 tgttcacccagttcggtccaaacttgacctactctggag 39731499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 1560671 - 1560704
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  1560671 acccagttcggtccaaacttgacctactctggag 1560704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 2360897 - 2360945
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaag 164  Q
    |||||||||| |||||||||||| |||  |||||||||||||||||||||    
T  2360897 caagtgcatatcaaaaccacaattcaac-caaggaataaacaagataaag 2360945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 22270151 - 22270103
Alignment:
Q  186 acaccaagaaatgttgacccagttcggtccaaacttcacctactctggag 235  Q
    ||||||||| ||||| |||||||||||||| ||||| |||||||||||||    
T  22270151 acaccaagagatgttcacccagttcggtcc-aacttgacctactctggag 22270103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 30814770 - 30814713
Alignment:
Q  45 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    |||||||||||| || |||||||||||||||| ||||||    ||||||||||||||||||||    
T  30814770 tgttgtgaattcgga-ctcaaatttcacaccagtacaaa----atatgatgtgtggagcaagt 30814713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 25616015 - 25615983
Alignment:
Q  203 cccagttcggtccaaacttcacctactctggag 235  Q
    ||||||||||||||||||| |||||||||||||    
T  25616015 cccagttcggtccaaacttgacctactctggag 25615983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 7574 - 7461
Alignment:
Q  115 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 214  Q
    ||||||||||||||||||||||| |||   ||||| |||||||||||||| ||| ||| ||||| ||||||||||||||||||||| |||||||||||||    
T  7574 caagtgcatagcaaaaccacaattcaaccaaagga-taaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcacccagttcggtc 7477  T
Q  215 caaacttcacctactct 231  Q
    | ||||| |||||||||    
T  7476 c-aacttaacctactct 7461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 7703 - 7644
Alignment:
Q  45 tgttgtgaatt-ctgaactcaaatttcacaccaatacaaactatatatgatgtgtggagcaagt 107  Q
    ||||||||||| | |||||||||||||||||||||||||||    |||||||||||||||||||    
T  7703 tgttgtgaatttcggaactcaaatttcacaccaatacaaac----tatgatgtgtggagcaagt 7644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 10740 - 10619
Alignment:
Q  112 aatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagg-gagcaaaagaaaatataacaacaccaagaaatgttgacccagttc 210  Q
    ||||||||| |||| ||||| |||||| ||  ||| |||||||||||||||| | ||| | | ||||  ||||||||||||||||||||| |||||||||    
T  10740 aatcaagtgtatagtaaaactacaatctaat-caaagaataaacaagataaaagagagtagaggaaag-ataacaacaccaagaaatgtttacccagttc 10643  T
Q  211 ggtccaaacttcacctactctggag 235  Q
    ||||| ||||| |||||||||||||    
T  10642 ggtcc-aacttgacctactctggag 10619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 1083 - 1045
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  1083 tgttcacccagttcggtccaaacttgacctactctggag 1045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 2604 - 2642
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  2604 tgttcacccagttcggtccaaacttgacctactctggag 2642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 8735 - 8773
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  8735 tgttcacccagttcggtccaaacttgacctactctggag 8773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 11161 - 11199
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  11161 tgttcacccagttcggtccaaacttgacctactctggag 11199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 11725 - 11687
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  11725 tgttcacccagttcggtccaaacttgacctactctggag 11687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 434701 - 434663
Alignment:
Q  197 tgttgacccagttcggtccaaacttcacctactctggag 235  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  434701 tgttcacccagttcggtccaaacttgacctactctggag 434663  T

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Target: scaffold0674 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 3731 - 3764
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  3731 acccagttcggtccaaacttgacctactctggag 3764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 6436 - 6403
Alignment:
Q  202 acccagttcggtccaaacttcacctactctggag 235  Q
    |||||||||||||||||||| |||||||||||||    
T  6436 acccagttcggtccaaacttaacctactctggag 6403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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