View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5932_high_35 (Length: 237)

Name: NF5932_high_35
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5932_high_35
NF5932_high_35
[»] chr5 (3 HSPs)
chr5 (1-221)||(34693680-34693900)
chr5 (96-148)||(15369482-15369534)
chr5 (96-148)||(16946317-16946369)
[»] chr3 (2 HSPs)
chr3 (81-157)||(30952566-30952642)
chr3 (81-157)||(30968378-30968454)
[»] chr8 (6 HSPs)
chr8 (81-156)||(40977232-40977307)
chr8 (81-154)||(11537256-11537329)
chr8 (91-148)||(26442019-26442076)
chr8 (96-148)||(13117844-13117896)
chr8 (96-148)||(13135580-13135632)
chr8 (96-148)||(18668996-18669048)
[»] chr7 (6 HSPs)
chr7 (81-155)||(23424403-23424477)
chr7 (81-156)||(29218214-29218289)
chr7 (81-155)||(23427849-23427923)
chr7 (81-156)||(31656828-31656903)
chr7 (91-148)||(48918565-48918622)
chr7 (96-148)||(41866277-41866329)
[»] chr2 (2 HSPs)
chr2 (74-154)||(1211725-1211805)
chr2 (91-148)||(2388814-2388871)
[»] scaffold0971 (1 HSPs)
scaffold0971 (91-148)||(1346-1403)
[»] chr6 (1 HSPs)
chr6 (91-148)||(29022869-29022926)
[»] chr4 (4 HSPs)
chr4 (91-148)||(23458699-23458756)
chr4 (91-148)||(42636399-42636456)
chr4 (91-148)||(56191443-56191500)
chr4 (91-148)||(56435063-56435120)
[»] chr1 (1 HSPs)
chr1 (91-148)||(45765005-45765062)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34693680 - 34693900
Alignment:
Q  1 gcattctataccggtcacgctttccaactaggtgcacgtgataatggccccactctgctaaaaaattaacaagaaaagagtgtctgagctcgggttcgaa 100  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||||||    
T  34693680 gcattctatacgggtcacgctttccaacgaggtgcacgtgataatggccccactctgccaaaaaatgaacaggaaaagagtgtctgagcccgggttcgaa 34693779  T
Q  101 ccggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagacaagatgtttattttattatccatggaaattgactttgtacatgctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||| |||||||||    
T  34693780 ccggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagacaagatgtttgttttgttatccatgaaaattgattttatacatgctg 34693879  T
Q  201 tatttaaacgttccaagattg 221  Q
    ||||||||| |||||| ||||    
T  34693880 tatttaaactttccaatattg 34693900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 15369534 - 15369482
Alignment:
Q  96 tcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||| ||||||||  ||||||| |||||  |||||||||||||||||||||    
T  15369534 tcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 15369482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 16946317 - 16946369
Alignment:
Q  96 tcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    ||||||||| |||||  ||||||| |||||  |||||||||||||||||||||    
T  16946317 tcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 16946369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 30952566 - 30952642
Alignment:
Q  81 tgtctgagctcgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagacaag 157  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30952566 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagacaag 30952642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 30968378 - 30968454
Alignment:
Q  81 tgtctgagctcgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagacaag 157  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30968378 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagacaag 30968454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 40977232 - 40977307
Alignment:
Q  81 tgtctgagctcgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagacaa 156  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40977232 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagacaa 40977307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 11537329 - 11537256
Alignment:
Q  81 tgtctgagctcgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagac 154  Q
    ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11537329 tgtctgagcccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagac 11537256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 26442019 - 26442076
Alignment:
Q  91 cgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||||||||||| |||||  ||||||| |||||  |||||||||||||||||||||    
T  26442019 cgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 26442076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 13117896 - 13117844
Alignment:
Q  96 tcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||| ||||||||  ||||||| |||||  |||||||||||||||||||||    
T  13117896 tcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 13117844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 13135632 - 13135580
Alignment:
Q  96 tcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||| ||||||||  ||||||| |||||  |||||||||||||||||||||    
T  13135632 tcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 13135580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 18668996 - 18669048
Alignment:
Q  96 tcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||| ||||||||  ||||||| |||||  |||||||||||||||||||||    
T  18668996 tcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 18669048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 23424403 - 23424477
Alignment:
Q  81 tgtctgagctcgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagaca 155  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23424403 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagaca 23424477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 29218214 - 29218289
Alignment:
Q  81 tgtctgagctcgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagacaa 156  Q
    ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29218214 tgtctgagcccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagacaa 29218289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 23427849 - 23427923
Alignment:
Q  81 tgtctgagctcgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagaca 155  Q
    ||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23427849 tgtctgagcccgggtttgaatcggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagaca 23427923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 31656828 - 31656903
Alignment:
Q  81 tgtctgagctcgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagacaa 156  Q
    ||||||||| | ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  31656828 tgtctgagcccaggttcgaactggggacctttagtgtgtgagactaacgtgataaccaactacaccacccagacaa 31656903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 48918565 - 48918622
Alignment:
Q  91 cgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||||||||||| |||||  ||||||| |||||  |||||||||||||||||||||    
T  48918565 cgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 48918622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 41866277 - 41866329
Alignment:
Q  96 tcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||| ||||||||  ||||||| |||||  |||||||||||||||||||||    
T  41866277 tcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 41866329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 1211725 - 1211805
Alignment:
Q  74 aaaagagtgtctgagctcgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagac 154  Q
    |||||| ||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1211725 aaaagattgtctgaacccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagac 1211805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 2388871 - 2388814
Alignment:
Q  91 cgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||||||||||| |||||  ||||||| |||||  |||||||||||||||||||||    
T  2388871 cgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 2388814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0971 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 1346 - 1403
Alignment:
Q  91 cgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||||||||||| |||||  ||||||| |||||  |||||||||||||||||||||    
T  1346 cgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 1403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 29022926 - 29022869
Alignment:
Q  91 cgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||||||||||| |||||  ||||||| |||||  |||||||||||||||||||||    
T  29022926 cgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 29022869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 23458699 - 23458756
Alignment:
Q  91 cgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||||||||||| |||||  ||||||| |||||  |||||||||||||||||||||    
T  23458699 cgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 23458756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 42636456 - 42636399
Alignment:
Q  91 cgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||||||||||| |||||  ||||||| |||||  |||||||||||||||||||||    
T  42636456 cgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 42636399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 56191443 - 56191500
Alignment:
Q  91 cgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||||||||||| |||||  ||||||| |||||  |||||||||||||||||||||    
T  56191443 cgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 56191500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 56435120 - 56435063
Alignment:
Q  91 cgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||||||||||| |||||  ||||||| |||||  |||||||||||||||||||||    
T  56435120 cgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 56435063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 45765005 - 45765062
Alignment:
Q  91 cgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 148  Q
    |||||||||||||| |||||  ||||||| |||||  |||||||||||||||||||||    
T  45765005 cgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 45765062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University