View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5932_high_8 (Length: 412)

Name: NF5932_high_8
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5932_high_8
NF5932_high_8
[»] chr5 (4 HSPs)
chr5 (1-395)||(26354904-26355298)
chr5 (198-395)||(9814784-9814981)
chr5 (1-143)||(9815036-9815175)
chr5 (321-366)||(38435428-38435473)
[»] chr3 (27 HSPs)
chr3 (1-388)||(19950878-19951262)
chr3 (1-395)||(19812027-19812418)
chr3 (1-389)||(19989275-19989663)
chr3 (59-388)||(19818311-19818640)
chr3 (207-388)||(19955829-19956010)
chr3 (1-388)||(20045877-20046261)
chr3 (207-364)||(19838162-19838319)
chr3 (245-389)||(19853265-19853409)
chr3 (245-395)||(20016420-20016570)
chr3 (1-388)||(26646764-26647142)
chr3 (1-142)||(19848990-19849131)
chr3 (1-142)||(20036580-20036721)
chr3 (245-384)||(20036827-20036966)
chr3 (1-142)||(19858072-19858213)
chr3 (1-154)||(19956072-19956225)
chr3 (1-142)||(24839951-24840092)
chr3 (1-142)||(19943720-19943857)
chr3 (1-122)||(19853532-19853653)
chr3 (1-139)||(26653155-26653290)
chr3 (2-124)||(20016179-20016301)
chr3 (1-132)||(30914653-30914784)
chr3 (58-154)||(19838381-19838477)
chr3 (245-388)||(19848741-19848884)
chr3 (11-43)||(19971710-19971742)
chr3 (312-388)||(19943473-19943549)
chr3 (312-388)||(20005273-20005349)
chr3 (246-390)||(26651785-26651929)
[»] chr1 (1 HSPs)
chr1 (1-389)||(1716967-1717352)
[»] chr8 (6 HSPs)
chr8 (1-142)||(22689632-22689773)
chr8 (1-144)||(11564111-11564254)
chr8 (62-147)||(22652126-22652211)
chr8 (1-122)||(22685660-22685778)
chr8 (245-389)||(22652309-22652453)
chr8 (1-43)||(22651870-22651912)
[»] chr4 (2 HSPs)
chr4 (59-151)||(6397773-6397865)
chr4 (1-145)||(6398258-6398399)
[»] chr7 (1 HSPs)
chr7 (2-108)||(12581426-12581529)


Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 26354904 - 26355298
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26354904 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 26355003  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaagttcctttcttgcattgatc 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26355004 atgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaagttcctttcttgcattgatc 26355103  T
Q  201 atcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26355104 atcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccaagaaccataacatcctccaaac 26355203  T
Q  301 tcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatg 395  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26355204 ctaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatg 26355298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 198 - 395
Target Start/End: Complemental strand, 9814981 - 9814784
Alignment:
Q  198 atcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctcca 297  Q
    |||| ||||| ||||||| |||||||||| ||| |||||||||    ||||||||||||||| |||||||| |||||||| | |||||||||||||||||    
T  9814981 atcaacttctcttccacctctctcatttcccggcctttaacatctatgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctcca 9814882  T
Q  298 aactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatg 395  Q
    |||| | ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| || ||||||||||||| ||||| ||||    
T  9814881 aactaatcgtcgcctcaccaaacggaaacacaaatgtattcgtcttacaacaccatttctcaacaaccccatatagcaagttttgatctttcattatg 9814784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 9815175 - 9815036
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||     ||||   ||  |||||||| ||||| ||||| | | ||||||| |||||    
T  9815175 ctctagcaagatgaatagcaatagaaaacaaagaacttttcaccaaag---atttatgagttaaaacaaagattgacaaccacgtagcaatgaacgcttc 9815079  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatccat 143  Q
     || |||| |||||||||||| || ||||||| ||||||||||    
T  9815078 atgctcaatttcactacctttgtcgatgaaaaaatccatccat 9815036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 38435428 - 38435473
Alignment:
Q  321 ggaaacacaaatgtattagtctcacaacaccatttctccacaaccc 366  Q
    ||||||||||||||||| |||| ||||||||||||||| |||||||    
T  38435428 ggaaacacaaatgtattggtcttacaacaccatttctcaacaaccc 38435473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 19951262 - 19950878
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||||||||||||||||||||| | | || ||||  |||||||  |  ||| | ||||||||||||||| ||| ||||||| ||||| ||| |||||    
T  19951262 ctctagcaagatgaatagcaataggtagcgaataactcctcaccaattt--attat-taggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttc 19951166  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaagttcctttcttgcattgatc 200  Q
     ||||||| |||||||||||||||  |||||| |||||||||||||| |  ||| | | ||||||||||||||||   ||||  || ||||||| ||||     
T  19951165 atgttcaatttcactacctttatcagtgaaaatatccatccataatgttgctctagccatacctgttttagtcttagaaagtgtctgtcttgcaatgatg 19951066  T
Q  201 atcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaac 300  Q
    | ||| | ||| ||| || |||||||| | |||| ||   |   ||||| |||||||||||  |||||||||||||| | |||||||||||||||||||     
T  19951065 agcttttcttcaacctctttcatttcttgatcttgaagtgtaatgaaaacaggatcaccaagaacagggtaaccccccaaaaccataacatcctccaaag 19950966  T
Q  301 tcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgattttt 388  Q
    | |  || ||||||||||| ||||||||||||||||| ||||||  |||||||||||| ||||||||  |||||||||| ||||||||    
T  19950965 tgatagttgcctcaccaaatggaaacacaaatgtattggtctcagtacaccatttctcaacaaccccaaaaagcaagttatgattttt 19950878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 19812418 - 19812027
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||||||| ||||||| || |||||||||||  |||||||||| ||  ||||   |||||||||||||||||| ||||||| | |||  ||||||||    
T  19812418 ctctagcaagaagaatagcgatcggaaacaaagactttttcaccaa-at--atttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttc 19812322  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaagttcctttcttgcattgatc 200  Q
     ||||||| ||||||||||||| | | ||||| ||  ||||||  |||| |  | | ||||||| ||||| |||    | ||| |  |||||||  |||     
T  19812321 atgttcaatttcactacctttaccaacgaaaatattgatccattttgatgtggtagccttaccttttttactctgccaaggtttccgtcttgcaaggatg 19812222  T
Q  201 atcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaac 300  Q
    | ||||||||||||| ||||||||||| |||||| ||| || |  ||||||||||||||||||| |||||||||||| | |||||||| ||||||||||     
T  19812221 agcttcttttccacctctctcatttcttggtcttgaactttggtaaaaataggatcaccaatgatagggtaaccccccaaaaccataatatcctccaaag 19812122  T
Q  301 tcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatg 395  Q
    | |  || || |||||||| ||||| ||||| || ||||||||||||||||||||||| ||||||||  | ||||| ||| ||||||| ||||||    
T  19812121 tgatagttgcttcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaaccccaaagagcaattttagatttttgagtatg 19812027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 19989663 - 19989275
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttcta-ggaaaaacaaaaattgataaccaagcaacaatgaatgctt 99  Q
    ||||||||||||||||||||| | |||| |||||||| ||||| |||| |  |||| || |||  |||||||||||| ||||||| | |||  |||||||    
T  19989663 ctctagcaagatgaatagcaacacgaaagaaagaactattcac-aacacgacttttataaggatgaacaaaaattgacaaccaagtagcaagaaatgctt 19989565  T
Q  100 cgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaagttcctttcttgcattgat 199  Q
    | ||||||| |||| |||||||||| |||||||||||||||||||    | |||| |  ||| |||  |||||||| | ||||| || |||| ||  |||    
T  19989564 catgttcaagttcattacctttatcaatgaaaacatccatccatacccttgttctagcattagctgacttagtcttataaagttgctgtctttcaaggat 19989465  T
Q  200 catcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaa 299  Q
    ||  | |||||||||| || |||||||| |||||| ||   |   ||||| |||||||||||  | |||||||||||| | |||||||||||| ||||||    
T  19989464 caattccttttccacctctttcatttcttggtcttgaagtgtaatgaaaacaggatcaccaagaatagggtaaccccctaaaaccataacatcttccaaa 19989365  T
Q  300 ctcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgatttttc 389  Q
     | |  || ||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||  | |||||||| |||| ||||    
T  19989364 gtgatagttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaaatagcaagttatgatctttc 19989275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 59 - 388
Target Start/End: Complemental strand, 19818640 - 19818311
Alignment:
Q  59 aggaaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggc 158  Q
    |||||||||||||||||||||||||| | |||  || ||||| ||||||| |||  |||||||| | || ||||  |||||||||  |||| |  | | |    
T  19818640 aggaaaaacaaaaattgataaccaagtagcaagaaaagcttcatgttcaatttcggtacctttaccaataaaaatttccatccattttgatgtggtagcc 19818541  T
Q  159 ttacctgttttagtctttttaagttcctttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcac 258  Q
    ||| ||   |||||||    | ||| || ||||||| |||| | ||||||||| ||| ||||||||||| | |||||||| ||   ||||| ||||||||    
T  19818540 ttagcttgattagtctgccaaggtttctgtcttgcaatgatgagcttcttttcaacctctctcatttcttgatctttaactttgatgaaaacaggatcac 19818441  T
Q  259 caatgacagggtaacccccgagaaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctc 358  Q
    |||||| ||| |||||||| | ||| || |||||||||||| | |  || ||||||||||| ||||| ||||| || |||||||||||||||||||||||    
T  19818440 caatgataggataaccccccaaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctc 19818341  T
Q  359 cacaaccccgtaaagcaagttttgattttt 388  Q
     ||||||||  | |||||||||||||||||    
T  19818340 aacaaccccaaatagcaagttttgattttt 19818311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 207 - 388
Target Start/End: Complemental strand, 19956010 - 19955829
Alignment:
Q  207 ttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccg 306  Q
    ||||||||| ||||||||||| ||||||| || |  | ||||| || |||||||||||||||||||||||| | |||||| ||||| |||||| | |  |    
T  19956010 ttttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattg 19955911  T
Q  307 tcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgattttt 388  Q
    | ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||  | |||||||||| ||||||    
T  19955910 ttgcctcaccaaatggaaacacaaatgtatttgtctcacaacaccatttctcaacaactccaaatagcaagtttttattttt 19955829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 20046261 - 20045877
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttct-aggaaaaacaaaaattgataaccaagcaacaatgaatgctt 99  Q
    |||||||||||| ||||||||||| ||||||| || |||||||||  ||   |||| | |||||||||||||||||| ||||||| |  || ||| ||||    
T  20046261 ctctagcaagattaatagcaatagaaaacaaacaatttttcaccat-at---ttttatgaggaaaaacaaaaattgacaaccaagtagtaaggaaggctt 20046166  T
Q  100 cgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaagttcctttcttgcattgat 199  Q
    ||||||||| ||||||||||||||| ||||| | |||||||||||||||| |    |  | |||    ||  | ||| |||| | ||| ||| ||| |||    
T  20046165 cgtgttcaatttcactacctttatcgatgaacatatccatccataatgatgtgtaagcatgaccatcgttcctatttgtaagctgcttcctttcatggat 20046066  T
Q  200 catcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaa 299  Q
    ||  || ||||||||| ||||||||||| |||||||||| || | ||||| | |||| ||||||| ||||||||| || | ||| || | |||||||||     
T  20046065 caatttattttccacctctctcatttcttggtctttaactttggtgaaaacatgatcgccaatgatagggtaacctcccaaaacaatgatatcctccaag 20045966  T
Q  300 ctcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgattttt 388  Q
     | |  || | ||||||||| ||||| | ||||||||| || |||||||||||||||||||||||||| |  || ||||| ||||||||    
T  20045965 gttattgttgtctcaccaaagggaaaaataaatgtatttgtatcacaacaccatttctccacaaccccttgtagtaagttctgattttt 20045877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 207 - 364
Target Start/End: Complemental strand, 19838319 - 19838162
Alignment:
Q  207 ttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccg 306  Q
    ||||||||| ||||||||||| ||||||| || |  | ||||| || |||||||||||||||||||||||| | |||||| ||||| |||||| | |  |    
T  19838319 ttttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattg 19838220  T
Q  307 tcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaac 364  Q
    | ||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||    
T  19838219 ttgcctcaccaaatggaaacacaaatgtattggtctcacagcaccatttctcaacaac 19838162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 245 - 389
Target Start/End: Complemental strand, 19853409 - 19853265
Alignment:
Q  245 gaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctca 344  Q
    |||||||||||||||||||| |||||||||||| | ||||||||||||||||||| | |  || || |||||||| || |||||||||||||| ||||||    
T  19853409 gaaaataggatcaccaatgatagggtaaccccccaaaaccataacatcctccaaagttattgttgcttcaccaaatgggaacacaaatgtattggtctca 19853310  T
Q  345 caacaccatttctccacaaccccgtaaagcaagttttgatttttc 389  Q
     |||||||||| || ||||||||  | | ||||||||||| ||||    
T  19853309 gaacaccatttgtcaacaaccccacataacaagttttgatctttc 19853265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 245 - 395
Target Start/End: Original strand, 20016420 - 20016570
Alignment:
Q  245 gaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctca 344  Q
    ||||| |||||| ||||||||||||||||| || | |||||||| |||||||||| | |  || || ||| |||| ||||||||||||||||| |||| |    
T  20016420 gaaaacaggatcgccaatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctta 20016519  T
Q  345 caacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatg 395  Q
     |||||||||||||| ||||| | || ||||||||||||||| ||||||||    
T  20016520 gaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatg 20016570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 26647142 - 26646764
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| ||  |  |   |||||||||| ||| ||| ||||||| |  || |||||||||    
T  26647142 ctctagcaagatgaacagcaataggaaacaaacaacttttcaccaa-atttagatg--aggaaaaacataaactgacaaccaagtagaaaggaatgcttc 26647046  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaagttcctttcttgcattgatc 200  Q
     ||||||| ||||||||||||||||||||||  ||| |||||||||| | |||| | ||||||   ||||        ||||| || |||||||  |||     
T  26647045 atgttcaatttcactacctttatccatgaaactatcgatccataatggtgttctagccttaccgtgttta------caaagttgctctcttgcaaggatg 26646952  T
Q  201 atcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaac 300  Q
    |  |||||||||||| ||||||||||| |||||| ||       ||||| |||||| ||||| | ||| |||||||| | |||||| | ||||||||||     
T  26646951 agtttcttttccacctctctcatttcttggtcttcaagtgaaatgaaaacaggatccccaataataggataaccccccaaaaccatgatatcctccaaag 26646852  T
Q  301 tcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgattttt 388  Q
    | |  || || |||||||| | || |||||| ||||| |||||||||||||||||||| || ||||| || |||||||  ||||||||    
T  26646851 taatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaactaccccatatagcaagtcatgattttt 26646764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 19849131 - 19848990
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttct-aggaaaaacaaaaattgataaccaagcaacaatgaatgctt 99  Q
    ||||||||||||  | |||||||||||||||||||||||||||||| ||   |||| | |||||||||||||| ||| ||||||| | |||  |||||||    
T  19849131 ctctagcaagatatacagcaataggaaacaaagaacttttcaccaa-atagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgctt 19849033  T
Q  100 cgtgttcaacttcactacctttatccatgaaaacatccatcca 142  Q
    | ||||||| ||||||||||||||| ||||||| |||||||||    
T  19849032 catgttcaatttcactacctttatcaatgaaaatatccatcca 19848990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 20036580 - 20036721
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttct-aggaaaaacaaaaattgataaccaagcaacaatgaatgctt 99  Q
    ||||||||||||  | |||||||||||||||||||||||||||||| ||   |||| | |||||||||||||| ||| ||||||| | |||  |||||||    
T  20036580 ctctagcaagatatacagcaataggaaacaaagaacttttcaccaa-atagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgctt 20036678  T
Q  100 cgtgttcaacttcactacctttatccatgaaaacatccatcca 142  Q
    | ||||||| ||||||||||||||| ||||||| |||||||||    
T  20036679 catgttcaatttcactacctttatcaatgaaaatatccatcca 20036721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 245 - 384
Target Start/End: Original strand, 20036827 - 20036966
Alignment:
Q  245 gaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctca 344  Q
    ||||| |||||||||||  ||||| ||||| || |||||||| | |||||||||| | || || || |||||||| | ||||||||||||||| ||||      
T  20036827 gaaaacaggatcaccaagaacaggataacctcctagaaccatgatatcctccaaaatgactgttgcttcaccaaaggaaaacacaaatgtatttgtcttg 20036926  T
Q  345 caacaccatttctccacaaccccgtaaagcaagttttgat 384  Q
     |||||||||||||||||||||| || |||||||||||||    
T  20036927 gaacaccatttctccacaaccccatatagcaagttttgat 20036966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 19858213 - 19858072
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    |||||||||||  ||||||||||||||||||||| ||||||||    | | || |  ||||||||||||||||||| ||||||| | |||  ||||||||    
T  19858213 ctctagcaagaccaatagcaataggaaacaaagatcttttcacattaaagtatctattaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttc 19858114  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatcca 142  Q
     || |||| ||||||||||||||| ||||||| |||||||||    
T  19858113 atgctcaatttcactacctttatcgatgaaaatatccatcca 19858072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 19956225 - 19956072
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||||||||||| | |||||||||||||| ||||||||||  |     ||||   ||| |||||||||||||| ||||||| | |||  || |||||    
T  19956225 ctctagcaagatgaacaacaataggaaacaaataacttttcacggaagaatatttatgagggaaaacaaaaattgacaaccaagtagcaagaaaagcttc 19956126  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatccataatgatattct 154  Q
     ||||||| ||||||||||||||| ||||||| ||||||||||| |||| ||||    
T  19956125 atgttcaatttcactacctttatcaatgaaaatatccatccatagtgatgttct 19956072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 24839951 - 24840092
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||| ||||||| ||||| |||||||||||||| |||||| |    | ||||   ||| |||||||||||||| ||||||| | |||  ||||||||    
T  24839951 ctctagctagatgaacagcaacaggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttc 24840050  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatcca 142  Q
     || |||||||||||||||||||| ||||||| |||||||||    
T  24840051 atgctcaacttcactacctttatcgatgaaaatatccatcca 24840092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 19943857 - 19943720
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||   || || |   ||||||||||||  |||| ||||||| | |||  ||||||||    
T  19943857 ctctagcaagatgaacagcaataggaaaca--gaacttttcaccacattgtatctatgaggaaaaacaaa--ttgacaaccaagtagcaagaaatgcttc 19943762  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatcca 142  Q
     ||||||| ||||||||||||||| ||||||| |||||||||    
T  19943761 atgttcaatttcactacctttatcgatgaaaatatccatcca 19943720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 19853653 - 19853532
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||||||| |||||||||||||||||||||| |||||||| |  | | || |   ||||||||||||||| || ||||||| | |||  ||||||||    
T  19853653 ctctagcaagacgaatagcaataggaaacaaagatcttttcacaataaagtatctatgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttc 19853554  T
Q  101 gtgttcaacttcactaccttta 122  Q
     ||||||| |||||||||||||    
T  19853553 atgttcaatttcactaccttta 19853532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 26653290 - 26653155
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||| ||  |  || |   |||||||||||||||||| ||||||||  ||| |||||| ||    
T  26653290 ctctagcaagatgaacagcaatagaaaacaaagaacttttcactaat-tctatatg--aggaaaaacaaaaattgacaaccaagctgcaaggaatgcatc 26653194  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccat 139  Q
     ||||||| |||||||||||  || ||||||| ||||||    
T  26653193 atgttcaatttcactaccttagtcaatgaaaatatccat 26653155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 20016179 - 20016301
Alignment:
Q  2 tctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttcg 101  Q
    ||||||||||||||||||||| ||||||||| ||||||||||  |   | ||||   ||| |||||||||||||| | ||||| | |||  ||||||||     
T  20016179 tctagcaagatgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttca 20016278  T
Q  102 tgttcaacttcactacctttatc 124  Q
    ||||||| |||||||||||||||    
T  20016279 tgttcaatttcactacctttatc 20016301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 30914784 - 30914653
Alignment:
Q  1 ctctagcaagatgaatag---caataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgc 97  Q
    ||||||||||||||||||   |||||||||||||| ||||||||||||| ||   |||   ||| |||||||||||||| ||||||| |  || ||||||    
T  30914784 ctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaa-atc--tttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgc 30914688  T
Q  98 ttcgtgttcaacttcactacctttatccatgaaaa 132  Q
    ||| ||||||| ||||||| ||||||| |||||||    
T  30914687 ttcatgttcaatttcactaactttatcaatgaaaa 30914653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 19838477 - 19838381
Alignment:
Q  58 taggaaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattct 154  Q
    ||||||||||||||||||| ||||||| | | |  || ||||| ||||||| ||| ||||||||||| ||||||| ||||||||||| |||| ||||    
T  19838477 taggaaaaacaaaaattgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctttatcgatgaaaatatccatccatagtgatgttct 19838381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 388
Target Start/End: Complemental strand, 19848884 - 19848741
Alignment:
Q  245 gaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctca 344  Q
    ||||| |||||||||||  ||||| |||||||| |||||||| | |||||||||| | |  || || |||||||| | ||||||||| ||||| || | |    
T  19848884 gaaaacaggatcaccaagaacaggataaccccctagaaccatgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggtatttgtatta 19848785  T
Q  345 caacaccatttctccacaaccccgtaaagcaagttttgattttt 388  Q
      |||||||||||| || |||||    |||||||||||||||||    
T  19848784 ggacaccatttctcaactaccccaactagcaagttttgattttt 19848741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 19971742 - 19971710
Alignment:
Q  11 atgaatagcaataggaaacaaagaacttttcac 43  Q
    |||||||||||||||||||||||||||||||||    
T  19971742 atgaatagcaataggaaacaaagaacttttcac 19971710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 19943549 - 19943473
Alignment:
Q  312 tcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgattttt 388  Q
    ||||||||  |||||||||| || || || ||||||||||||||||| |||| |||  ||| ||||| |||||||||    
T  19943549 tcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctcaacaatcccacaaaccaagtcttgattttt 19943473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 20005273 - 20005349
Alignment:
Q  312 tcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgattttt 388  Q
    ||||||||  |||||||||| || || || ||||||||||||||||| |||| |||  ||| ||||| |||||||||    
T  20005273 tcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctcaacaatcccacaaaccaagtcttgattttt 20005349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 390
Target Start/End: Complemental strand, 26651929 - 26651785
Alignment:
Q  246 aaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcac 345  Q
    |||| ||||| ||||| || || ||| ||||| | ||| || |||||||||||| | |  || ||||||||||| ||||| |||||   ||| |||||||    
T  26651929 aaaacaggataaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcctcaccaaaaggaaaaacaaagcaatttgtctcac 26651830  T
Q  346 aacaccatttctccacaaccccgtaaagcaagttttgatttttca 390  Q
     ||||||||||||   || ||| |||| ||||| |||||||||||    
T  26651829 tacaccatttctcagaaatcccataaaccaagtcttgatttttca 26651785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 1717352 - 1716967
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||   || || |  |||||||||| |||  || ||||||| | |||  ||||||||    
T  1717352 ctctagcaagatgaacagcaataggaaacaaagattttttcaccaaa--gctttatg-aggaaaaacataaaccgacaaccaagtagcaagaaatgcttc 1717256  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaagttcctttcttgcattgatc 200  Q
     ||||||| ||||||||||||||| |  ||||||||||||||||||| | |||| ||| |||||  ||   || | | |||||  | |||||||  ||||    
T  1717255 atgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctaggcctacctccttgtttcctataaagttgttctcttgcaaggatc 1717156  T
Q  201 atcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaac 300  Q
    |  || | ||| | | || |||||||| |||||| ||      |||||| |||||||||||||||||||||| |||| | |||||||| ||||||||||     
T  1717155 aatttatcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaatcccctaaaaccataatatcctccaaag 1717056  T
Q  301 tcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgatttttc 389  Q
    | |  || || |||||||| ||||||||||||||||| ||||||||||||||||| || |||| ||| || | ||||||||||||||||    
T  1717055 tgattgtggcttcaccaaaaggaaacacaaatgtatttgtctcacaacaccatttttcaacaatcccatataacaagttttgatttttc 1716967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 22689632 - 22689773
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||| |||||||||| ||||| ||||||||||||||| ||| ||||   |||   |||||||||||||||||| ||||||| | |||  ||||||||    
T  22689632 ctctagccagatgaatagaaatagtaaacaaagaacttttgaccgacatatttttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttc 22689731  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatcca 142  Q
     ||||||| |||| |||| ||||| |||||||||||||||||    
T  22689732 atgttcaaattcattaccattatcgatgaaaacatccatcca 22689773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 11564111 - 11564254
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||||||||||| |||||||||||||||||||||||| | ||||| || |||   ||||||||||||||| || | ||| |||  ||||||||||||    
T  11564111 ctctagcaagatgaacagcaataggaaacaaagaacttttgatcaacaagcttttatgaggaaaaacaaaaatggaaagccatgcagaaatgaatgcttc 11564210  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatccata 144  Q
     ||||||| || |||| |||||  ||||||||  ||||||||||    
T  11564211 atgttcaattttactagctttactcatgaaaaattccatccata 11564254  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 22652126 - 22652211
Alignment:
Q  62 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatg 147  Q
    ||||||||||||||| ||||||| | ||| ||| ||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  22652126 aaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaatatccatccataatg 22652211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 22685660 - 22685778
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    |||||||||||||||||||||| ||||||| |||| |||||||||| ||   |||   |||||||||||||| ||| ||||||||| |||  ||||||||    
T  22685660 ctctagcaagatgaatagcaatcggaaacatagaagttttcaccaaaat---tttatgaggaaaaacaaaaagtgacaaccaagcagcaagaaatgcttc 22685756  T
Q  101 gtgttcaacttcactaccttta 122  Q
     || |||| |||||||||||||    
T  22685757 atgctcaatttcactaccttta 22685778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 389
Target Start/End: Original strand, 22652309 - 22652453
Alignment:
Q  245 gaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctca 344  Q
    ||||| |||||||||||  |||||||||||| | | || ||||||||| || ||  | |  || ||||||||||| |||||||||||||  || ||||||    
T  22652309 gaaaacaggatcaccaagaacagggtaaccctctaaaatcataacatcttctaaggtgatagttgcctcaccaaatggaaacacaaatgagtttgtctca 22652408  T
Q  345 caacaccatttctccacaaccccgtaaagcaagttttgatttttc 389  Q
    || ||||||||||| ||||||||  | |||||||| |||| ||||    
T  22652409 cagcaccatttctcaacaaccccaaatagcaagttatgatctttc 22652453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 22651870 - 22651912
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcac 43  Q
    ||||||||||||||| |||||||||||||||| ||||||||||    
T  22651870 ctctagcaagatgaacagcaataggaaacaaacaacttttcac 22651912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 6397773 - 6397865
Alignment:
Q  59 aggaaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatat 151  Q
    ||||||| || ||||||| ||||| | | ||| ||| ||||| ||||||| ||||||||||||||| ||||| | ||||||||||||||||||    
T  6397773 aggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaacatatccatccataatgatat 6397865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 6398399 - 6398258
Alignment:
Q  1 ctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttc 100  Q
    ||||||| |||| || |||||||| ||||||| ||||||||||||   |   ||| |||||||||||||||||| | ||||||  | ||| ||| |||||    
T  6398399 ctctagcgagattaacagcaatagaaaacaaacaacttttcaccattgt---tttactaggaaaaacaaaaattaacaaccaattagcaaggaaggcttc 6398303  T
Q  101 gtgttcaacttcactacctttatccatgaaaacatccatccataa 145  Q
     ||||||| ||||||||||||||  || || | ||||||||||||    
T  6398302 atgttcaatttcactacctttatagataaacatatccatccataa 6398258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 12581529 - 12581426
Alignment:
Q  2 tctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttcg 101  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||   |||   | | | |||||||||||||||||| ||||||| | ||| ||| |||||     
T  12581529 tctagcaagattaatagcaatagaaaacaaataacttttcac---catttttctacgaggaaaaacaaaaattgacaaccaagtagcaaggaaggcttca 12581433  T
Q  102 tgttcaa 108  Q
    |||||||    
T  12581432 tgttcaa 12581426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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