View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_low_1 (Length: 807)
Name: NF5932_low_1
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 411 - 802
Target Start/End: Original strand, 31471976 - 31472367
Alignment:
| Q |
411 |
gtcttagtaactgctttaaggggtgctgcaaaaatggaaaaggaaagaccc-----tattttctacgtctacatttctcaaagtgacaaaatgtgacgca |
505 |
Q |
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| T |
31471976 |
gtcttagtaacttctttaagggttgctgcaaaaatggaaaaggaaagaccccattttaatttctacgtctacatttctcaaagtgacaaaatgtgacgca |
31472075 |
T |
|
| Q |
506 |
tgggttccataaacaaaacaaaatgaaaaagatcattgccctcatcaattcaatgatatgacccatttctatacacttactattttttatttatggatat |
605 |
Q |
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| T |
31472076 |
tgggttccat----aaaacaaaatgaaaaagatcattgccctcatcaattcaatgatatgacccatttatatacacttactatttttt-tttatagatat |
31472170 |
T |
|
| Q |
606 |
atactttaatgtttgatttcatcgttattatgctaaagttacagtttgaaactttaattaaaaccacagtgtactctaggagtcgcggtgaatacaattc |
705 |
Q |
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| T |
31472171 |
atactttaatgtttgatttcatcattattatgctaaagttacaatttgaaacttcaattaaaaccacagtgtagtctaggagtcggggtgaaaacaattc |
31472270 |
T |
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| Q |
706 |
ctacgatcccctcttctgtggtggtgagaggagttttagatttaaggtacatttgctgttctttgagtattaattcgactgaggtttctctgctcct |
802 |
Q |
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| T |
31472271 |
ctacgatcctctcttctgtggtggtgagaggagttttagatttaaggtacctttactggtctttgaatattaattcgactgaggtttctctggtcct |
31472367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 31467684 - 31468097
Alignment:
| Q |
1 |
taactcattcattttaaaccgtgaatattacactatgtataaatttcatattttcgctattctccaacttaaagacacccaacctaaaggcacatcctgg |
100 |
Q |
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| T |
31467684 |
taactcattcattttaaaccgtgaatatcacactatgtataaatttcatattttcgctattctccaacttaaagacacccaacctaaaggcacatcctgg |
31467783 |
T |
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| Q |
101 |
tgttaaacttgcccaattattatgctccacatttatcatgatctgtattcacacagtgattatcatgatttatgatcattatc-------ttgccaatac |
193 |
Q |
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| T |
31467784 |
tgttaaacttgcccaattattatgctccacattta--at--tctgtattcacacagtgattatcatgatttatgatcattatcaaagttattgccaatac |
31467879 |
T |
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| Q |
194 |
caaatcaatttttctatttacatccattattctaatgatgagaaacacatgtaacacattttctaccnnnnnnnnnnncacacacacatgtaacacattg |
293 |
Q |
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| T |
31467880 |
caaatc-attttactatttacatttattattctaatgatgagaaacacttgtaacacattttctaccaaaaaaaaa---aaacacacatgcaacacattg |
31467975 |
T |
|
| Q |
294 |
attcatttaacaaaaaatttagctcaatcatattagcttctaactaa-----tcacctaagcaacaacaaagatcttctcctccattatattaaggaatc |
388 |
Q |
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| T |
31467976 |
attcatttaacaaaaaatttagctcaatcatattagcttctaactaatcatttcacctaagcaacaacaaagatcttctcctccattatattaaggaatc |
31468075 |
T |
|
| Q |
389 |
cactttgagaggcttgatttta |
410 |
Q |
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| T |
31468076 |
ccctttgagaggcttgatttta |
31468097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 372 - 562
Target Start/End: Original strand, 31459424 - 31459615
Alignment:
| Q |
372 |
cattatattaaggaatccactttgagaggcttgattttagtcttagtaactgctttaaggggtgctgcaaaaatggaaaaggaaagaccctattttctac |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||| | ||||| |||||||||||||||||||||||||| |
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| T |
31459424 |
cattatattaaggaatccactttgagaggcttgattttagtctt-gtaacttc-ttatggggtgccgtaaaaagggaaaaggaaagaccctattttctac |
31459521 |
T |
|
| Q |
472 |
gt----ctacatttctcaaagtgacaaaatgtgacgcatgggttccataaacaaaacaaaatgaaaaagatcattgccctcatcaattcaatgat |
562 |
Q |
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| T |
31459522 |
gtgtacttacatttctcaaagtgacaaaatgtgacgcatgggttgcgtagacaaaac-gaatgaaaaagatcattgctctcatcaattcaatgat |
31459615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 161 - 343
Target Start/End: Original strand, 31457946 - 31458129
Alignment:
| Q |
161 |
tatcatgatttatgatcattatc-------ttgccaataccaaatcaatttttctatttacatccattattctaatgatgagaaacacatgtaacacatt |
253 |
Q |
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| T |
31457946 |
tatcatgatttatgatcattatcaaagtaattgccaataccaaatca-tttttctatttacatccattattctaatgatgagaaacacatgtaacacatt |
31458044 |
T |
|
| Q |
254 |
ttctaccnnnnnnnnnnncacacacacatgtaacacattgattcatttaacaaaaaat---ttagctcaatcatattagcttctaactaatca |
343 |
Q |
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| T |
31458045 |
ttctacc-------aaaaca-aaacacatgtaacacattgattcatttattaaaatattaattagctcaatcatattagcttctaattaatca |
31458129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 796
Target Start/End: Original strand, 31459777 - 31459893
Alignment:
| Q |
681 |
ctaggagtcgcggtgaatacaattcctacgatcccctcttctgtggtggtgagaggagttttagatttaaggtacatttgctgttc-tttgagtattaat |
779 |
Q |
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|||||||||| |||||||||||| |||| | ||| ||||||||||| |||||||| || ||||| || ||||| ||| || || |||| |||||||| |
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| T |
31459777 |
ctaggagtcggggtgaatacaatacctatgttcctctcttctgtggcggtgagagaagctttaggttaaaggtgacgttgttggtcttttgtgtattaat |
31459876 |
T |
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| Q |
780 |
tcgactgaggtttctct |
796 |
Q |
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| T |
31459877 |
tcgaccgaggtttctct |
31459893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 31457860 - 31457909
Alignment:
| Q |
23 |
gaatattacactatgtataaatttcatattttcgctattctccaacttaa |
72 |
Q |
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|||||| | ||||||||||||||||| || ||| |||||||||||||||| |
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| T |
31457860 |
gaatatcatactatgtataaatttcacatgttcactattctccaacttaa |
31457909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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