View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5932_low_10 (Length: 397)
Name: NF5932_low_10
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 1581090 - 1580723
Alignment:
| Q |
20 |
attgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1581090 |
attgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctg |
1580991 |
T |
|
| Q |
120 |
tgtcgttgagaaaatcatcagctatatcttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1580990 |
tgtcgttgagaaaatcatcagctatatcttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgat |
1580891 |
T |
|
| Q |
220 |
atgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnn |
319 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1580890 |
atgtttgatatcagtgccattcaactctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgttttttt |
1580791 |
T |
|
| Q |
320 |
ggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatc |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1580790 |
ggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatc |
1580723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 1603725 - 1604092
Alignment:
| Q |
20 |
attgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1603725 |
attgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctg |
1603824 |
T |
|
| Q |
120 |
tgtcgttgagaaaatcatcagctatatcttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1603825 |
tgtcgttgagaaaatcatcagctatatcttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgat |
1603924 |
T |
|
| Q |
220 |
atgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnn |
319 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1603925 |
atgtttgatatcagtgccattcaactctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgttttttt |
1604024 |
T |
|
| Q |
320 |
ggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatc |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604025 |
ggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatc |
1604092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 359
Target Start/End: Complemental strand, 1587463 - 1587251
Alignment:
| Q |
147 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc |
246 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||| | ||||||||||| || |||||| ||||||||||||| |||||||||| | ||||| ||||| |
|
|
| T |
1587463 |
cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc |
1587364 |
T |
|
| Q |
247 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt |
346 |
Q |
| |
|
|||||||||| |||| || | ||||||||||||||| |||||||||||||| ||||||||||| || ||| |||||||||||| |||||||| |
|
|
| T |
1587363 |
tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggt |
1587264 |
T |
|
| Q |
347 |
ttcactcttcttt |
359 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
1587263 |
ttaactcttcttt |
1587251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 147 - 359
Target Start/End: Original strand, 1590760 - 1590972
Alignment:
| Q |
147 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc |
246 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||| | |||||||| || || |||||| ||||||||||||| |||||||||| | ||||| ||||| |
|
|
| T |
1590760 |
cttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc |
1590859 |
T |
|
| Q |
247 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt |
346 |
Q |
| |
|
|||||||||| |||| || | ||||||||||||||| |||||||||||||| ||||||||||| || ||| |||||||||||| |||||||| |
|
|
| T |
1590860 |
tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggt |
1590959 |
T |
|
| Q |
347 |
ttcactcttcttt |
359 |
Q |
| |
|
|| || ||||||| |
|
|
| T |
1590960 |
ttaacacttcttt |
1590972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 1590664 - 1590716
Alignment:
| Q |
24 |
tgaactctctaaaagaagggtccaacacaatcacttctataccaaccagttta |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
1590664 |
tgaactctctaaaagaagggtccaacacaatcacttctaaaccaaccggttta |
1590716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 1587563 - 1587507
Alignment:
| Q |
20 |
attgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagttta |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||| || ||||| |
|
|
| T |
1587563 |
attgtgaactctctaaaagaagggtccaacacagtcacttctaaaccatcctgttta |
1587507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 359
Target Start/End: Original strand, 19270343 - 19270555
Alignment:
| Q |
147 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc |
246 |
Q |
| |
|
||||||||| |||||||| |||||| |||||| | |||||| ||| ||||||||| |||| |||||||| |||||||||| | ||||||||||| |
|
|
| T |
19270343 |
cttctttaatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttgatatcagtgccattcaactc |
19270442 |
T |
|
| Q |
247 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt |
346 |
Q |
| |
|
|||||||||| |||| | | ||||||||||||||| ||||| |||||||| |||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
19270443 |
tttgatcttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtgctctttggt |
19270542 |
T |
|
| Q |
347 |
ttcactcttcttt |
359 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19270543 |
ttcactcttcttt |
19270555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 19270222 - 19270271
Alignment:
| Q |
20 |
attgtgaactctctaaaagaagggtccaacacaatcacttctataccaac |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19270222 |
attgtgaactctctaaaagaagggtccaacacaatcacttctaaaccaac |
19270271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 146 - 312
Target Start/End: Original strand, 39616012 - 39616178
Alignment:
| Q |
146 |
tcttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaact |
245 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || | || |||||| ||||||||| ||| ||||||||| | |||||||| | |||||||||| |
|
|
| T |
39616012 |
tcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccattcaact |
39616111 |
T |
|
| Q |
246 |
ctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttg |
312 |
Q |
| |
|
| ||||||||| ||| ||||| |||||| ||||||||||||||| | | ||| |||| ||||||||| |
|
|
| T |
39616112 |
ccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatcttg |
39616178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 39615906 - 39615951
Alignment:
| Q |
31 |
tctaaaagaagggtccaacacaatcacttctataccaaccagttta |
76 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
39615906 |
tctaaaataagggtccaacacaatcacttctaaaccaaccggttta |
39615951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University