View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_low_14 (Length: 367)
Name: NF5932_low_14
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 39099116 - 39098755
Alignment:
| Q |
1 |
caaaccaattcaacaagaataaaatgcaagagattttgcatttaatagcttcctaaactcttaagaagggcgtaaaatgtacaatcaaatgaaattatat |
100 |
Q |
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| T |
39099116 |
caaaccaattcaacaagaataaaatgcaagagattttgcatttaatagcttcctaaactcttaagaagggcgtaaaatgtacaatcaaatgaaattatat |
39099017 |
T |
|
| Q |
101 |
taataaactaggtgatgaagatcatttacctgaattaatttcctcttcaaatgattttagtaatgctttatattgattctctcttaactcaatgtccttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39099016 |
taataaactaggtgatgaagatcatttacctgaattaatttcctcttcaaatgattttagtaatgctttatattgattctctcttaactcaatgtccttc |
39098917 |
T |
|
| Q |
201 |
agttctccatcaaattcattatgcgttgactcggcaaccttcacttctccttcaaactgattctcttttgattttagctccttttgttgcacttcaatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39098916 |
agttctccatcaaattcattatgcgttgactcggcaaccttcacttctccttcaaactgattctcttttgattttagctccttttgttgcacttcaatat |
39098817 |
T |
|
| Q |
301 |
gctcnnnnnnngtaccaacctccttcacttggctttctaaacgcttttcctcttctttttct |
362 |
Q |
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| T |
39098816 |
gctctttttttgtaccaacctccttcacttggctttctaaacgcttttcctcttctttttct |
39098755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 87 - 295
Target Start/End: Complemental strand, 39603647 - 39603439
Alignment:
| Q |
87 |
aaatgaaattatattaataaactaggtgatgaagatcatttacctgaattaatttcctcttcaaatgattttagtaatgctttatattgattctctctta |
186 |
Q |
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| T |
39603647 |
aaatggaattgtcttaataaaccagatgatgaagatcgtttacctgatttaatttcctcgtcaaatgattttagtaatgcttcatattgatcctctctta |
39603548 |
T |
|
| Q |
187 |
actcaatgtccttcagttctccatcaaattcattatgcgttgactcggcaaccttcacttctccttcaaactgattctcttttgattttagctccttttg |
286 |
Q |
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|||||| | |||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||||| |||||||| ||||| ||||||||||| | |
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| T |
39603547 |
actcaagcttcttcagttctccatcaaattcattctgcattgactcaacatccttcacttctccttcaaattgattctcctttgactttagctccttcag |
39603448 |
T |
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| Q |
287 |
ttgcacttc |
295 |
Q |
| |
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||||||||| |
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| T |
39603447 |
ttgcacttc |
39603439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 184 - 341
Target Start/End: Complemental strand, 39105890 - 39105733
Alignment:
| Q |
184 |
ttaactcaatgtccttcagttctccatcaaattcattatgcgttgactcggcaaccttcacttctccttcaaactgattctcttttgattttagctcctt |
283 |
Q |
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|||||||||| || ||||||||||||||||||||||| || |||| || || |||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
39105890 |
ttaactcaatctctttcagttctccatcaaattcattcggcattgagtcaacatcctttacttctcctttaaactgattctcttttgattttagctcctt |
39105791 |
T |
|
| Q |
284 |
ttgttgcacttcaatatgctcnnnnnnngtaccaacctccttcacttggctttctaaa |
341 |
Q |
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|||||||| ||||| |||||| |||||||||||||||||||| |||||||| |
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| T |
39105790 |
ttgttgcatttcaaaatgctctttttttataccaacctccttcacttggatttctaaa |
39105733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 2362367 - 2362305
Alignment:
| Q |
114 |
gatgaagatcatttacctgaattaatttcctcttcaaatgattttagtaatgctttatattga |
176 |
Q |
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| T |
2362367 |
gatgaagagcttttacctgattcaatttcctcttcaaatgattttattaacgtttcatattga |
2362305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 51575572 - 51575491
Alignment:
| Q |
123 |
catttacctgaattaatttcctcttcaaatgattttagtaatgctttatattgattctctcttaactcaatgtccttcagtt |
204 |
Q |
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||||||||||| | ||||||||||||||| ||||||| |||| || ||||||||| ||||||||||||| |||||||||| |
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| T |
51575572 |
catttacctgattcaatttcctcttcaaaagattttataaatgtttcatattgattgtctcttaactcaagttccttcagtt |
51575491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 51575488 - 51575440
Alignment:
| Q |
249 |
ccttcaaactgattctcttttgattttagctccttttgttgcacttcaa |
297 |
Q |
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|||||||| ||||||||||||||||| ||||||||| |||||| ||||| |
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| T |
51575488 |
ccttcaaattgattctcttttgatttcagctcctttagttgcagttcaa |
51575440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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