View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_low_16 (Length: 344)
Name: NF5932_low_16
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 27075959 - 27075644
Alignment:
| Q |
17 |
ctttctttccacacacatagcactcacctaggtttgctttgaaattagggttagttactttgagagcatgatcagatttgttctcatacctctgttgttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075959 |
ctttctttccacacacatagcactcacctaggtttgctttgaaattagggttagttactttgagagcatgatcagatttgttctcatacctctgttgttt |
27075860 |
T |
|
| Q |
117 |
acgcgcattgttttggatcagatttgctctcgattccaaagctttggcacgtgcagctccgcattccttcctgctggtgtcttcaatgattatgtgcctg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075859 |
acgcgcattgttttggatcagatttgctctcgattccaaagctttggcacgtgcagctccgcattccttcctgctggtgtcttcaatgattatgtgcctg |
27075760 |
T |
|
| Q |
217 |
atgagatcattaagagacatctgcttgtgtttatgtttcagctgttgcttgtaatcgtcccatgaactaggcaacttttcaaccagggcagcagcgacaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075759 |
atgagatcattaagagacatctgcttgtgtttatgtttcagctgttgcttgtaatcgtcccatgaactaggcaacttttcaaccagggcagcagcgacaa |
27075660 |
T |
|
| Q |
317 |
acacatctggaagtat |
332 |
Q |
| |
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|||||||||||||||| |
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| T |
27075659 |
acacatctggaagtat |
27075644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 132 - 332
Target Start/End: Complemental strand, 26050872 - 26050672
Alignment:
| Q |
132 |
gatcagatttgctctcgattccaaagctttggcacgtgcagctccgcattccttcctgctggtgtcttcaatgattatgtgcctgatgagatcattaaga |
231 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26050872 |
gatcagatttgttctggattccaaagctttggcacgtgcagctccgcattccttcctgctggtgtcttcaatgattatgtgcctgatgagatcattaaga |
26050773 |
T |
|
| Q |
232 |
gacatctgcttgtgtttatgtttcagctgttgcttgtaatcgtcccatgaactaggcaacttttcaaccagggcagcagcgacaaacacatctggaagta |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26050772 |
gacatctgcttgtgtttatgtttcagctgttgcttgtaatcgtcccatgaactaggcaacttttcaaccagggcagcagcgacaaacacatctggaagta |
26050673 |
T |
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| Q |
332 |
t |
332 |
Q |
| |
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| |
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|
| T |
26050672 |
t |
26050672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 26050941 - 26050858
Alignment:
| Q |
17 |
ctttctttccacacacatagcactcacctaggtttgctttgaaattagggttagttactttgagagcatgatcagatttgttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26050941 |
ctttctttccacacacatagcactcacctaggtttgctttgaaattagggttagttactttgagagcatgatcagatttgttct |
26050858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 14635578 - 14635891
Alignment:
| Q |
17 |
ctttctttccacacacatagcactcacctaggtttgctttgaaattagggttagttactttgagagcatgatcagatttgttctcatacctctgttgttt |
116 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| || ||||| |||||||||||||||||||||||| ||||||| ||||||| |||||||| |
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| T |
14635578 |
ctttctttccacacacatagcagtaacctaggtttgccttaaaattgattttagttactttgagagcatgatcatatttgttttcatacccttgttgttt |
14635677 |
T |
|
| Q |
117 |
acgcgcattgttttggatcagatttgctctcgattccaaagctttggcacgtgcagctccgcattccttcctgctggtgtcttcaatgattatgtgcctg |
216 |
Q |
| |
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| || |||||||||||| ||||||||||| || |||||||||||||| ||||| ||| | ||||| || |||||||| |||||||| ||| ||||||| |
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| T |
14635678 |
gcacgtattgttttggattagatttgctcttgactccaaagctttggctcgtgcggcttcacattcttttttgctggtgccttcaatgtttacgtgcctg |
14635777 |
T |
|
| Q |
217 |
atgagatcattaagagacatctgcttgtgtttatgtttcagctgttgcttgtaatcgtcccatgaactaggcaacttttcaaccagggcagcagcgacaa |
316 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |||||||||||||| | |||| | |||| ||||||||||||| ||| || |||||| |
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| T |
14635778 |
atgagatcattaagagacatatgcttgtgcttatgtttcatttgttgcttgtaatcattccataagttaggaaacttttcaaccaatgcaccaacgacaa |
14635877 |
T |
|
| Q |
317 |
acacatctggaagt |
330 |
Q |
| |
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|||||||| ||||| |
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| T |
14635878 |
acacatctagaagt |
14635891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 36610974 - 36610659
Alignment:
| Q |
17 |
ctttctttccacacacatagcactcacctaggtttgctttgaaattagggttagttactttgagagcatgatcagatttgttctcatacctctgttgttt |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||| |||| ||||||||| ||| || ||||| ||||||||||| |
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| T |
36610974 |
ctttctttccacacacatagcaacaacctaggttcaatttaaaattgaggttagttactctgagggcatgatcatttttattttcatatctctgttgttt |
36610875 |
T |
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| Q |
117 |
acgcgcattgttttggatca--gatttgctctcgattccaaagctttggcacgtgcagctccgcattccttcctgctggtgtcttcaatgattatgtgcc |
214 |
Q |
| |
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|| | |||||||||||| | ||||| ||||||| |||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||| | |
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| T |
36610874 |
gcgtgtattgttttggattatagattttctctcgactccaaagctttggctcgagcagctccacattcctttctgctggtgtcttcaatgattatgt--c |
36610777 |
T |
|
| Q |
215 |
tgatgagatcattaagagacatctgcttgtgtttatgtttcagctgttgcttgtaatcgtcccatgaactaggcaacttttcaaccagggcagcagcgac |
314 |
Q |
| |
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||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||| | |||||| |||||||||||||||| |||| ||||||| |
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| T |
36610776 |
tgatgagatcattaagaaacatttgcttgtgcttatgtttcagttgttgcttgtaatcattccatgagtcgggcaacttttcaaccaaggcatcagcgac |
36610677 |
T |
|
| Q |
315 |
aaacacatctggaagtat |
332 |
Q |
| |
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|||||| ||||||||||| |
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| T |
36610676 |
aaacacgtctggaagtat |
36610659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 200 - 332
Target Start/End: Original strand, 36611239 - 36611371
Alignment:
| Q |
200 |
caatgattatgtgcctgatgagatcattaagagacatctgcttgtgtttatgtttcagctgttgcttgtaatcgtcccatgaactaggcaacttttcaac |
299 |
Q |
| |
|
||||||||||||| |||||||||||||||| | |||| |||||||| |||||||||||||||||||||||||| | |||| | || || |||||||| |
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| T |
36611239 |
caatgattatgtgtctgatgagatcattaaaaaacatgtgcttgtgcttatgtttcagctgttgcttgtaatcattccattagtcggggaagttttcaac |
36611338 |
T |
|
| Q |
300 |
cagggcagcagcgacaaacacatctggaagtat |
332 |
Q |
| |
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|| |||| |||||||||||| ||||||||||| |
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| T |
36611339 |
caaggcactagcgacaaacacgtctggaagtat |
36611371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 36611135 - 36611240
Alignment:
| Q |
64 |
gggttagttactttgagagcatgatcagatttgttctcatacctctgttgtttacgcgcattgttttggatcagatttgctctcgattccaaagctttgg |
163 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||| || ||||| |||||| ||| || | |||||| ||||| || ||||||||||| | ||||||||||| |
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|
| T |
36611135 |
gggttagttactccgagggcatgatcagttttattttcata--tctgttctttgcgtgtattgttgtggattaggtttgctctcgagttcaaagctttgg |
36611232 |
T |
|
| Q |
164 |
cacgtgca |
171 |
Q |
| |
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| |||||| |
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|
| T |
36611233 |
ctcgtgca |
36611240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 2929598 - 2929654
Alignment:
| Q |
205 |
attatgtgcctgatgagatcattaagagacatctgcttgtgtttatgtttcagctgt |
261 |
Q |
| |
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||||||||| ||||||||||| |||||||||| || ||||| |||||||| |||||| |
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|
| T |
2929598 |
attatgtgcttgatgagatcaataagagacatatgattgtgattatgttttagctgt |
2929654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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