View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_low_2 (Length: 628)
Name: NF5932_low_2
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 10 - 548
Target Start/End: Complemental strand, 31822070 - 31821532
Alignment:
| Q |
10 |
attatacttgtgattaatcattatgttggcatcaatatattccctacttttgaccacaaagagaaaaagttaaagaagacaaacctcaattctgaaaata |
109 |
Q |
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| T |
31822070 |
attatacttgtgattaatcattatgttggcatcaatatattccctacttttgaccacaaagagaaaaagttaaagaagacaaacctcaattctgaaaata |
31821971 |
T |
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| Q |
110 |
gagagagaaccagttttgttcaagctctttttgctttgaggaataacagattgaaccaaacaaatcattgattcccattggttcctattcaatgagtctc |
209 |
Q |
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| T |
31821970 |
gagagagaaccagttttgttcaagctctttttgctttgaggaataacagattgaaccaaacaaatcattgattcccattggttcctattcaatgagtctc |
31821871 |
T |
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| Q |
210 |
caacaaacataagcctcttccctctaagcttctcaagtagaactcttggtttgaaccttaataacaagtttatacagatgtaatcaacattaacaacact |
309 |
Q |
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| T |
31821870 |
caacaaacataagcctcttccctctaagcttctcaagtagaactcttggtttgaaccttaataacaagtttatacaaatgtaatcaacattaacaacact |
31821771 |
T |
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| Q |
310 |
atcaaactaaaacaagaaatttgaaaaatgtaaagaattttaatgtgcttacttcggtaaagaacaatctcttggctgccacctccaattctgatacaaa |
409 |
Q |
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| T |
31821770 |
atcaaactaaaacaagaaatttgaaaaatgtaaagaattttaatgtgcttacttcggtaaagaacaatctcttggctgccacctccaattctgatacaaa |
31821671 |
T |
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| Q |
410 |
gaatcacttcttccattcttcatgcatgtaacttgtgaagtaagaaattcacattgttcttctttgtataaaggatgtgtcacattatcaagaacccatt |
509 |
Q |
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| T |
31821670 |
gaatcacttcttccattcttcatgcatgtaacttgtgaagtaagaaattcacattgttcttctttgtataaaggatgtgtcacattatcaagaacccatt |
31821571 |
T |
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| Q |
510 |
tccctgtaaacaaatcacaatcttcttgaggtaacacaa |
548 |
Q |
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| T |
31821570 |
tccctgtaaacaaatcacaatcttcttgaggtaacacaa |
31821532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 370 - 533
Target Start/End: Complemental strand, 35688616 - 35688453
Alignment:
| Q |
370 |
agaacaatctcttggctgccacctccaattctgatacaaagaatcacttcttccattcttcatgcatgtaacttgtgaagtaagaaattcacattgttct |
469 |
Q |
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| T |
35688616 |
agaacagtcttttggctgccatttccaattctgatacaaagaatcacgtcttccattcctcatacatgtaacttgagaagtgagaaactcacattcatct |
35688517 |
T |
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| Q |
470 |
tctttgtataaaggatgtgtcacattatcaagaacccatttccctgtaaacaaatcacaatctt |
533 |
Q |
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| T |
35688516 |
tctttatacaaaggatgtgtcacgttatctaaaacccatttaccattgaacaagtcacaatctt |
35688453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 35688829 - 35688742
Alignment:
| Q |
155 |
acagattgaaccaaacaaatcattgattcccattggttcctattcaatgagtctccaacaaacataagcctcttccctctaagcttct |
242 |
Q |
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| T |
35688829 |
acagattgaaccatacaaaccattgattcccactggtttctattcaaagagtctccaacaaacattaacctcttccctctaatcttct |
35688742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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