View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_low_20 (Length: 322)
Name: NF5932_low_20
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 7165188 - 7164949
Alignment:
| Q |
18 |
gaatttgaatgcgaaattgaaatgctggtttgttgaattcacgaaaaatgggaatcaaattcattgggattaatcagagtttagaatgatggtggtaaag |
117 |
Q |
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| T |
7165188 |
gaatttgaatgcgaaattgaaatgctggtttgttgaattcacgaaaaatgggaatcaaattcattgggatttatcagagtttagaatgatggtggtaaag |
7165089 |
T |
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| Q |
118 |
gatcatgaatgaggaagtgttttgttctttgttgagtgaggcaaataatcaaacacttgatcggtgtgttcgaatgcgcgcgaaaatacacgatctttgg |
217 |
Q |
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| T |
7165088 |
gatcatgaatgaggaagtgttttgttctttgttgagtgaggcaaataatcaaacacttggtgggtgtgttcgaatgcgcgcgaaaatacacgatatttgg |
7164989 |
T |
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| Q |
218 |
agaaacgttgggaatggaaatttttagctacgttgatttg |
257 |
Q |
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| T |
7164988 |
agaaacgttgggaatggaaatttttagctacgttgatttg |
7164949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 7164841 - 7164779
Alignment:
| Q |
259 |
gtatagtggactatgaattctactctttatttaaatggatccgctcatttccaaaataaatga |
321 |
Q |
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| T |
7164841 |
gtatagtggactatgaattctactctttactcaaatggattcgctcattctcaaaataaatga |
7164779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 55527992 - 55527942
Alignment:
| Q |
272 |
tgaattctactctttatttaaatggatccgctcatttccaaaataaatgac |
322 |
Q |
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| T |
55527992 |
tgaattctgctcattatttaaatggattcgctcatttccaaagcaaatgac |
55527942 |
T |
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