View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_low_22 (Length: 317)
Name: NF5932_low_22
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 13339723 - 13340018
Alignment:
| Q |
11 |
cacagaatggctctttcttcagcacttattaaaattttcattactttcctcttcctacaaaaccatgtcaattcacaatattcatcgccatcaaaaccac |
110 |
Q |
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| T |
13339723 |
cacaaaatggctctttcttcagcacttattaaaattttcattactttcctcttcctacaaaaccatgtcaattcacaatattcatcaccatcaaaaccac |
13339822 |
T |
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| Q |
111 |
aaccaagtctaggaagtacaatttctttctccataacaaaattcgatgatgaaagtcccaacatatttgtcaagggagatgcctcaatctctaatggcgt |
210 |
Q |
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| T |
13339823 |
aaccaagtctaggaagtacaatttctttctccatgacaaaattcgatgatgaaagtcccaacatatttgtcaagggagatgcctcaatctctaatggcgt |
13339922 |
T |
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| Q |
211 |
tcttagcctaacaaaaaccgacaaatattctggtaaaccactccaaaaaagtgttggacgcgcaacacatctcactccgattcacatttgtgatga |
306 |
Q |
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| T |
13339923 |
tcttagcctaacaaaaaccgacaaatattctggtaaaccactccaaaaaagtgttggacgcgcaacacatctcactccgattcacatttgggatga |
13340018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 13336385 - 13336680
Alignment:
| Q |
11 |
cacagaatggctctttcttcagcacttattaaaattttcattactttcctcttcctacaaaaccatgtcaattcacaatattcatcgccatcaaaaccac |
110 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13336385 |
cacaaaatgactctttcttcagcacttattaaaattttcattactttcctcttcctacaaaaccatgtcaattcacaatattcatcaccatcaaaaccac |
13336484 |
T |
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| Q |
111 |
aaccaagtctaggaagtacaatttctttctccataacaaaattcgatgatgaaagtcccaacatatttgtcaagggagatgcctcaatctctaatggcgt |
210 |
Q |
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| T |
13336485 |
aaccaagtctaggaagtacaatttctttctccataacaaaattcgatgatgaaagtcccaacatatttgtcaagggagatacctcaatctctaatggcgt |
13336584 |
T |
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| Q |
211 |
tcttagcctaacaaaaaccgacaaatattctggtaaaccactccaaaaaagtgttggacgcgcaacacatctcactccgattcacatttgtgatga |
306 |
Q |
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| T |
13336585 |
tcttagcctaacaaaaaccgacaaatattctggtaaaccactccaaaaaagtgttggacacgcaacacatctcactccgattcacatttgggatga |
13336680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 13345543 - 13345616
Alignment:
| Q |
21 |
ctctttcttcagcacttattaaaattttcattactttcctcttcctacaaaaccatgtcaattcacaatattca |
94 |
Q |
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|||||||||| |||||||||||||| | |||||||||| ||||||||||| ||||||| ||||||||||||||| |
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| T |
13345543 |
ctctttcttccgcacttattaaaatctacattactttcgtcttcctacaataccatgtgaattcacaatattca |
13345616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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