View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_low_29 (Length: 265)
Name: NF5932_low_29
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 36675498 - 36675627
Alignment:
| Q |
113 |
tttaatttataaggttaaaaaactaatgaatcttaattcaacattgcctcttgttgaatcctagtgaccatctggtatacagctgaagctatatcatcca |
212 |
Q |
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| T |
36675498 |
tttaatttataaggttaaaaaactaatgaatcttaattcaacattgcctcttgttgaatcctagtgaccgtctggtatacagctgaagctatatcatcca |
36675597 |
T |
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| Q |
213 |
ctgatcccaacttgcaatcatcttcaacct |
242 |
Q |
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| T |
36675598 |
ccgatcccaacttgcaatcatcttcaacct |
36675627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 36288305 - 36288214
Alignment:
| Q |
1 |
tatgctaatgaaaacgtgttccttcttcagtgatgaaatgagagagaagagtacaatgattttgagtaggttcacggatcaggtgttttctt |
92 |
Q |
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| T |
36288305 |
tatgctaatgaaaacgtgttccttcttcagtgatgaaatgagagagaagagtacaatgattttgagtaggttcacggatcaggtgttttctt |
36288214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 46922649 - 46922592
Alignment:
| Q |
185 |
tggtatacagctgaagctatatcatccactgatcccaacttgcaatcatcttcaacct |
242 |
Q |
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| T |
46922649 |
tggtatatagctgcagctatctcatccactgatccaagcttgcaatcatcttcaacct |
46922592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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