View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_low_3 (Length: 542)
Name: NF5932_low_3
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 59 - 258
Target Start/End: Original strand, 18605470 - 18605669
Alignment:
| Q |
59 |
ggggtgaaacggcaaactctatcaaaagagcactaaagaagatgatggattaaggtccattgttctagtacatcttcacattcttaaaaaataaatataa |
158 |
Q |
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| T |
18605470 |
ggggtgaaacggcaaactctatcaaaagagaactaaagaagatgatggattaaggtccattgttctagtacatcttcacattcttaaaaaataaatataa |
18605569 |
T |
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| Q |
159 |
ttaccatttatttcggtgtaggattgagaaattagaatttattttatatgaagaatcttcaaacaagggttaaaatgtagattcttatatgtattcatag |
258 |
Q |
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| T |
18605570 |
ttaccatttatttcggtgtaggattgagaaatttgaatttattttatacgaagaatcttcaaacaagggttaaaatgtagattcttatatgtattcatag |
18605669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 400 - 526
Target Start/End: Original strand, 18605861 - 18605987
Alignment:
| Q |
400 |
catatgtaaaggtttatagaacgcttcaacactgtcaaaaagtgagcaatcctttaaatatgttgcctcttatttataataaaggtttattgtttaaaaa |
499 |
Q |
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| T |
18605861 |
catatgtaaaggtttatagaacgcttcaacactgtcaaaaagtgagcaatcctttaaatatgttgcctcttatttataataaaggtttattgtttaaaaa |
18605960 |
T |
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| Q |
500 |
gtgaacagtcattcgacacatatatac |
526 |
Q |
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| T |
18605961 |
gtgaacagtcattcgacacatatatac |
18605987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 18605764 - 18605839
Alignment:
| Q |
330 |
ttaccattgaaccgttttattaattaactgtttgtgactttatcaatataattcttgatgacccataattcatatg |
405 |
Q |
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| T |
18605764 |
ttaccattgaaccgttttattaattaactgtttgtgactttatcaatataattcttgatgacccataattcatatg |
18605839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 18605385 - 18605459
Alignment:
| Q |
11 |
gaagaatagaggaagcaagctcggtcatgggaagtttcccaagaaacaggggtgaaacggcaaactctatcaaaa |
85 |
Q |
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| T |
18605385 |
gaagaatagaggaagcaagctcggtcatgggaagtttcccaagaaacaggggtgaaatggcaaactctatcaaaa |
18605459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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