View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_low_30 (Length: 260)
Name: NF5932_low_30
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 49250427 - 49250248
Alignment:
| Q |
19 |
gttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaattcctt-gatttcacttttctttcttt |
117 |
Q |
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||||||||||||| ||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
49250427 |
gttgtaaagttgaccacatgtaaaaaattcaaattgaagagtatga-tgaaatgaagttactttgttatcaaattcctttgatttcacatttctttcttt |
49250329 |
T |
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| Q |
118 |
ctcttgatcaacaaaatagagtatcaataaagtaatcaaaatatcaatgaaactggcacataattacaaatatcagtaaaaccattctctaa |
209 |
Q |
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| T |
49250328 |
cttttgatcaacaa-----------aataaagtaatcaaaatatcaatgaaactagcacataattacaaatatcagtaaaacctttctctaa |
49250248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 270075 - 270175
Alignment:
| Q |
19 |
gttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaattccttgatttcacttttctttctttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
270075 |
gttgtaaagttgaacacatgtaaaatattcaaattgaggagtattagtgaaatgaagttaccttgttatcaaattccttgatttcacgtttctttctttc |
270174 |
T |
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| Q |
119 |
t |
119 |
Q |
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| T |
270175 |
t |
270175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 14945492 - 14945436
Alignment:
| Q |
37 |
tgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaatt |
93 |
Q |
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| T |
14945492 |
tgtaaaatattcaaattgaagagtatcgatgaaatgaagttactttgtattcaaatt |
14945436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 14940252 - 14940194
Alignment:
| Q |
35 |
catgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaatt |
93 |
Q |
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||||||||||||| ||||||| ||||||| |||||||||||||||||||| ||||||| |
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| T |
14940252 |
catgtaaaatattgaaattgaagagtatcgatgaaatgaagttactttgtattcaaatt |
14940194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 14950259 - 14950201
Alignment:
| Q |
35 |
catgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaatt |
93 |
Q |
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||||||||||||| ||||||| ||||||| |||||||||||||||||||| ||||||| |
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| T |
14950259 |
catgtaaaatattgaaattgaagagtatcgatgaaatgaagttactttgtattcaaatt |
14950201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 14954500 - 14954442
Alignment:
| Q |
35 |
catgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaatt |
93 |
Q |
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| T |
14954500 |
catgtaaaatattgaaattgaagagtatcgatgaaatgaagttactttgtattcaaatt |
14954442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 8791021 - 8791088
Alignment:
| Q |
19 |
gttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgtta |
86 |
Q |
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||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
8791021 |
gttgtaaagtttaccacatataaaatattcaaattgaggagtatcaatcaaatgaaattactttgtta |
8791088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 6205772 - 6205819
Alignment:
| Q |
19 |
gttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaat |
66 |
Q |
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||||||||||||| ||||||||||| ||||||||||| ||||| |||| |
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| T |
6205772 |
gttgtaaagttgaccacatgtaaaacattcaaattgaagagtaccaat |
6205819 |
T |
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