View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_low_38 (Length: 201)
Name: NF5932_low_38
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 34705566 - 34705436
Alignment:
| Q |
20 |
ttgtgtaattgtcatttactctacggtttctgattgtaatatacgaacattgtagtgcttaatctgtaattaagttttggctttctttggtttgacatca |
119 |
Q |
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| T |
34705566 |
ttgtgtaattgtcatttactctaaggtttctgattgtaatatacgaacattgtagtgcttaatctgtaattaagttttggctttctttggtttgacatca |
34705467 |
T |
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| Q |
120 |
tttaccaccaaaaatctattgtagttgcatt |
150 |
Q |
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| T |
34705466 |
tttaccaccaaaaatctattgtagttgcatt |
34705436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 34704902 - 34704856
Alignment:
| Q |
141 |
tagttgcattgttattttaataaatttttattgtttttactctgtgc |
187 |
Q |
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| T |
34704902 |
tagttgcattgttattttaataaatttttattgtttttactctgtgc |
34704856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 18978098 - 18978174
Alignment:
| Q |
105 |
tttggtttgacatcatttaccaccaaaaatctattgtagttgcattgttattttaataaatttttattgtttttact |
181 |
Q |
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| T |
18978098 |
tttggtttgacaccacttaccaccaaaaacctcttgtacttgcattgttgttttaatagagttttcttatttttact |
18978174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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