View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_low_4 (Length: 458)
Name: NF5932_low_4
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Complemental strand, 333706 - 333263
Alignment:
| Q |
13 |
aatatatgacacctcaaaagtcaatatcaccaatcttttgctatgagcttatgattcttacacatttcctttacctttactctcaagcaaattcacattt |
112 |
Q |
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| T |
333706 |
aatatatgacacctcaaaagtcaatatcaccaatcctttgctatgagcttatgattcttacatattttcttcacctttactcttaagcaaattcacattt |
333607 |
T |
|
| Q |
113 |
tcattttccaacaaacacctctctcacataaatgttcaaaataaaactcat----------------tagttgagatccaaaacatacaattttttcttc |
196 |
Q |
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| T |
333606 |
tcattttccaacaaacacctctctcacataaattttcaaaataaaactcatccaatctattcctcactagttgagatccaaaacataca-ttttttcttc |
333508 |
T |
|
| Q |
197 |
ttctatcaaaataatcaaattgaaaccatgagatccaaaacacaactctcatccaatctcaaactagtcatcatctctcttgtatttctctttctcttca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
333507 |
ttctatcaaaataatcaaattgaaaccatgagatccaaaacacaactctcatccaatctcaaactagtcatcatctctcttgtatttctctttctcttca |
333408 |
T |
|
| Q |
297 |
tcatgctattcaaatcatccattttctcatttactcaaccactcaccacaacttcaaacaccaacaatgactcaaaaatctcatcacaagaaacagaaaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
333407 |
tcatgctattcaaatcatccattttctcatttactcaaccactcaccacaacttcaaacaccaacaatgactcaaaaatctcatcgcaagaaacagaaaa |
333308 |
T |
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| Q |
397 |
aaccacaaaatctgaatgtccttcactcactataacaccaacatg |
441 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
333307 |
aaccacaaaatctgaatgtccttcactccctataacaccaacatg |
333263 |
T |
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