View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5932_low_5 (Length: 434)

Name: NF5932_low_5
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5932_low_5
NF5932_low_5
[»] chr4 (5 HSPs)
chr4 (1-422)||(51387006-51387425)
chr4 (257-414)||(14527465-14527624)
chr4 (255-341)||(45393979-45394065)
chr4 (251-304)||(24666123-24666176)
chr4 (257-341)||(26354196-26354280)
[»] chr8 (4 HSPs)
chr8 (257-420)||(26847604-26847769)
chr8 (272-362)||(36182064-36182154)
chr8 (313-372)||(42663931-42663990)
chr8 (257-338)||(4402254-4402335)
[»] chr5 (6 HSPs)
chr5 (259-422)||(23257850-23258013)
chr5 (255-361)||(39937851-39937956)
chr5 (259-306)||(16194354-16194401)
chr5 (313-387)||(23925722-23925796)
chr5 (323-373)||(24566131-24566181)
chr5 (323-373)||(24607167-24607217)
[»] chr7 (7 HSPs)
chr7 (270-373)||(36611670-36611773)
chr7 (248-362)||(17114136-17114250)
chr7 (270-362)||(17114789-17114881)
chr7 (257-341)||(30581230-30581314)
chr7 (278-341)||(43659760-43659823)
chr7 (287-361)||(48135927-48136000)
chr7 (257-333)||(34808961-34809037)
[»] chr1 (4 HSPs)
chr1 (253-371)||(27746093-27746210)
chr1 (257-372)||(2261477-2261591)
chr1 (317-373)||(28924644-28924700)
chr1 (259-333)||(1099893-1099967)
[»] chr2 (2 HSPs)
chr2 (257-341)||(20606885-20606969)
chr2 (286-362)||(18544142-18544217)
[»] chr3 (3 HSPs)
chr3 (270-372)||(9830585-9830686)
chr3 (257-372)||(15288221-15288335)
chr3 (257-305)||(53242666-53242714)
[»] chr6 (1 HSPs)
chr6 (328-373)||(16718336-16718381)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 51387425 - 51387006
Alignment:
Q  1 tcatttcatgctaatataaaaatcaaagatagtgnnnnnnnnagggggaaaatcaatgacactgttacaacttacnnnnnnnnnnnnnntgcatcgatag 100  Q
    ||||||||||||||||||||||||||||| ||||        |||||||||||||||||||||||||||||||||              |||||||||||    
T  51387425 tcatttcatgctaatataaaaatcaaagaaagtgttttttttagggggaaaatcaatgacactgttacaacttacaaaaaaaaaa----tgcatcgatag 51387330  T
Q  101 tacatctcaatgatacttgttactttgtgtacaatatacttatgttccgcaatctttttaaatgtgcaccaatccaatcattttcataacagattataga 200  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51387329 tacatctcaatgatacttgttaccttgtgtacaatatacctatgttccacaatctttttaaatgtgcaccaatccaatcattttcataacagactataga 51387230  T
Q  201 gaagtgataaaatggatatcaaaaggacatatttatcaataaaaattataaataatggtggattatagagtgagggatcaattacgtccctcatcgatga 300  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||    
T  51387229 gaagtgataaaatggatatcaaaaggacatatttatcagtaaaaattataaataatggtggattatagggtgagggatcaattacgtccctcaccggtga 51387130  T
Q  301 accactatgaataataattaagagtcattagattaatcaagtacacatatcttattatacaccatatacactatattgcacctctc--tcttttctcctc 398  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||    
T  51387129 accactacgaataataattaaaagtcattagattaatcaagtacacatatcttattatacaccatatacactatattgcacctctctttcttttcttctc 51387030  T
Q  399 cctctcgtctcttgcccctttgct 422  Q
    ||||||||||||||||||||||||    
T  51387029 cctctcgtctcttgcccctttgct 51387006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 257 - 414
Target Start/End: Complemental strand, 14527624 - 14527465
Alignment:
Q  257 ggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatcttatt 356  Q
    |||||||| ||| ||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14527624 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccactatgaataataattaagagtcattagattaatcaagtacatatatcttatt 14527525  T
Q  357 atacaccatatacactatattgcacctctc--tcttttctcctccctctcgtctcttgcc 414  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||||| |||||||    
T  14527524 atacaccatatacactatattgcacctctctttcttttcttctccctctcgtgtcttgcc 14527465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 45393979 - 45394065
Alignment:
Q  255 atggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaag 341  Q
    |||||| ||| ||||||||||| ||||||| ||| || | || ||||||||||| || ||||||| |||| |||||||| |||||||    
T  45393979 atggtgaattctagagtgagggttcaattaagtctcttaccggtgaaccactattaacaataattgagagccattagatcaatcaag 45394065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 24666123 - 24666176
Alignment:
Q  251 aataatggtggattatagagtgagggatcaattacgtccctcatcgatgaacca 304  Q
    |||||||||||||| ||| ||||||||||||||| |||||||| || |||||||    
T  24666123 aataatggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 24666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 26354280 - 26354196
Alignment:
Q  257 ggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaag 341  Q
    ||||| || ||| ||||||| ||||||| ||||||||  | || ||||| ||||| ||| |||||||||||||| ||||||||||    
T  26354280 ggtgggttctagggtgagggttcaattaagtccctcacaggtggaccaccatgaacaattattaagagtcattaaattaatcaag 26354196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 257 - 420
Target Start/End: Complemental strand, 26847769 - 26847604
Alignment:
Q  257 ggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatcttatt 356  Q
    |||||||| |||  |||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26847769 ggtggattctaggatgagggatcaattaagttcctcaccggtgaaccactatgaataataattaagagtcattagattaatcaagtacacatagcttatt 26847670  T
Q  357 atacaccatatacactatattgcacctctc--tcttttctcctccctctcgtctcttgcccctttg 420  Q
    ||| ||||||||||||||||||||||||||  |||||||| ||||||||||||||||||| |||||    
T  26847669 atataccatatacactatattgcacctctctttcttttcttctccctctcgtctcttgcctctttg 26847604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 36182154 - 36182064
Alignment:
Q  272 gagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatcttattatacac 362  Q
    ||||| ||||||| |||||||| || |||||||| || || ||| | | |||||||||||||||||||||  |||| | ||||||||||||    
T  36182154 gagggttcaattaagtccctcaccggtgaaccaccataaacaattactgagagtcattagattaatcaagatcacacaccttattatacac 36182064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 42663990 - 42663931
Alignment:
Q  313 aataattaagagtcattagattaatcaagtacacatatcttattatacaccatatacact 372  Q
    ||||||||||||||||| |||||||||| |||| |  |||||||||||||  ||||||||    
T  42663990 aataattaagagtcatttgattaatcaaatacataattcttattatacactgtatacact 42663931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 338
Target Start/End: Complemental strand, 4402335 - 4402254
Alignment:
Q  257 ggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatc 338  Q
    |||||||| ||| ||||||| || |||| |||||||| || ||||||||| |||| || ||  ||||| |||||||||||||    
T  4402335 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaacaagagccattagattaatc 4402254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 259 - 422
Target Start/End: Complemental strand, 23258013 - 23257850
Alignment:
Q  259 tggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatcttattat 358  Q
    |||||| ||| |||||||||||||||  || ||||  | ||||||  | |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23258013 tggattttagggtgagggatcaattaaatctctcactggtgaacc--tgtgaataataattaaaagtcattagattaatcaagtacacatatcttattat 23257916  T
Q  359 acaccatatacactatattgcacctctc--tcttttctcctccctctcgtctcttgcccctttgct 422  Q
    |||| |||||||||||||||||||||||  |||||||| ||| ||||||| |||||||||||||||    
T  23257915 acacgatatacactatattgcacctctctttcttttcttctctctctcgtgtcttgcccctttgct 23257850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 361
Target Start/End: Complemental strand, 39937956 - 39937851
Alignment:
Q  255 atggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatctta 354  Q
    |||||||||| ||| ||||||| ||| ||| |||||||| || || ||||| |||||||| ||| ||||| |||||||||||  || | || ||||||||    
T  39937956 atggtggattctagggtgagggttcagttaagtccctcaccggtggaccaccatgaataacaat-aagagccattagattaactaaattcatatatctta 39937858  T
Q  355 ttataca 361  Q
    |||||||    
T  39937857 ttataca 39937851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 16194354 - 16194401
Alignment:
Q  259 tggattatagagtgagggatcaattacgtccctcatcgatgaaccact 306  Q
    |||||||||||||||||||||||||| |||| |||||  |||||||||    
T  16194354 tggattatagagtgagggatcaattaagtccatcatcagtgaaccact 16194401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 23925722 - 23925796
Alignment:
Q  313 aataattaagagtcattagattaatcaagtacacatatcttattatacaccatatacactatattgcacctctct 387  Q
    ||||||||||||||||||||||||| ||  ||||| || ||||||||||   ||||||||| |||  ||||||||    
T  23925722 aataattaagagtcattagattaattaaaaacacaaattttattatacattgtatacactaaattatacctctct 23925796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 24566181 - 24566131
Alignment:
Q  323 agtcattagattaatcaagtacacatatcttattatacaccatatacacta 373  Q
    |||| ||||||||||||||| ||||||| |||||||||||| ||| |||||    
T  24566181 agtcgttagattaatcaagtgcacatattttattatacaccgtatgcacta 24566131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 24607217 - 24607167
Alignment:
Q  323 agtcattagattaatcaagtacacatatcttattatacaccatatacacta 373  Q
    |||| ||||||||||||||| ||||||| |||||||||||| ||| |||||    
T  24607217 agtcgttagattaatcaagtgcacatattttattatacaccgtatgcacta 24607167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 373
Target Start/End: Complemental strand, 36611773 - 36611670
Alignment:
Q  270 gtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatcttattatacaccatatac 369  Q
    ||||||| ||||||| ||||||||||  ||||||||| | || || |||||||| || ||||||||||||||| ||||||| |||||||||||| ||| |    
T  36611773 gtgagggttcaattaagtccctcatcagtgaaccactgtaaacaacaattaagaatcgttagattaatcaagtgcacatattttattatacaccgtatgc 36611674  T
Q  370 acta 373  Q
    ||||    
T  36611673 acta 36611670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 362
Target Start/End: Original strand, 17114136 - 17114250
Alignment:
Q  248 ataaataatggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacaca 347  Q
    ||||| ||||||||||| ||| ||||||| ||||||| ||||||||||| |||| ||| ||||| ||| | | | | |||||||||||||||||   |||    
T  17114136 ataaaaaatggtggattctagggtgagggttcaattaagtccctcatcggtgaatcaccatgaacaattactgataatcattagattaatcaagattaca 17114235  T
Q  348 tatcttattatacac 362  Q
     | ||||||||||||    
T  17114236 caccttattatacac 17114250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 362
Target Start/End: Complemental strand, 17114881 - 17114789
Alignment:
Q  270 gtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatcttattatacac 362  Q
    ||||||| ||||||| || ||||| || |||||||| ||||| ||| | | |||||||||||||||||||||  |||| | ||||||||||||    
T  17114881 gtgagggttcaattaagttcctcaccggtgaaccaccatgaacaattactgagagtcattagattaatcaagatcacacaacttattatacac 17114789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 30581314 - 30581230
Alignment:
Q  257 ggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaag 341  Q
    |||| ||| ||| ||||||| ||||||| |||||||| |  ||||||||||| || |||||||||||| |||||||| |||||||    
T  30581314 ggtgaattctagggtgagggttcaattaagtccctcaccagtgaaccactataaacaataattaagagccattagatcaatcaag 30581230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 43659760 - 43659823
Alignment:
Q  278 tcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaag 341  Q
    ||||||| |||| ||||||||||||||| || ||  |||||||||||| ||||||| |||||||    
T  43659760 tcaattaagtccatcatcgatgaaccaccataaactataattaagagttattagatcaatcaag 43659823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 48135927 - 48136000
Alignment:
Q  287 tccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatcttattataca 361  Q
    ||||||| ||||| | |||||| || || |||||||| |||||||||||||||||| |||||||| |||| ||||    
T  48135927 tccctcaccgatgcatcactataaacaacaattaaga-tcattagattaatcaagtccacatatcctattctaca 48136000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 34809037 - 34808961
Alignment:
Q  257 ggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagat 333  Q
    |||||||| ||||||||||| ||||||| |||| |||||| || |||||| | ||  |||||||  |||||||||||    
T  34809037 ggtggattctagagtgagggttcaattaagtccttcatcggtgtaccactttaaaagataattattagtcattagat 34808961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 27746210 - 27746093
Alignment:
Q  253 taatggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatct 352  Q
    |||||||||||| ||| ||||||| ||||||| |||||||| |  || | |||  ||||||| ||| ||||| ||||||||||||  ||| || ||||||    
T  27746210 taatggtggattctagcgtgagggttcaattaagtccctcaccagtggatcaccgtgaataacaat-aagagccattagattaattgagttcatatatct 27746112  T
Q  353 tattatacaccatatacac 371  Q
    |||||||||||||||||||    
T  27746111 tattatacaccatatacac 27746093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 372
Target Start/End: Complemental strand, 2261591 - 2261477
Alignment:
Q  257 ggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatcttatt 356  Q
    |||| ||| ||| ||||||| ||||||| | |||||| |  |||||||| |||||||| ||| ||||| ||||||||||||  ||| || ||||||||||    
T  2261591 ggtgaattttagggtgagggttcaattaagcccctcaccagtgaaccaccatgaataacaat-aagagccattagattaattgagttcatatatcttatt 2261493  T
Q  357 atacaccatatacact 372  Q
    ||| | ||||||||||    
T  2261492 atatatcatatacact 2261477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 28924644 - 28924700
Alignment:
Q  317 attaagagtcattagattaatcaagtacacatatcttattatacaccatatacacta 373  Q
    ||||||||||||||||||||||||   |||||||||||||||| | || ||||||||    
T  28924644 attaagagtcattagattaatcaaactcacatatcttattataaatcacatacacta 28924700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 1099893 - 1099967
Alignment:
Q  259 tggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagat 333  Q
    |||||| ||| ||||| | || |||| |||||||| |||||||||||| |||||||| ||| |||| ||||||||    
T  1099893 tggattctagggtgagagttctattaagtccctcaccgatgaaccactctgaataattattgagagccattagat 1099967  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 20606969 - 20606885
Alignment:
Q  257 ggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaag 341  Q
    |||| ||| ||| ||||||| ||||||| |||||||| || ||||||||||| || |||||||||||| |||||||| |||||||    
T  20606969 ggtgaattctagggtgagggttcaattaagtccctcaccggtgaaccactataaacaataattaagagccattagatcaatcaag 20606885  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 362
Target Start/End: Complemental strand, 18544217 - 18544142
Alignment:
Q  286 gtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatcttattatacac 362  Q
    |||||||| || || ||||| |||||||| |||||||||  |||||||||||  ||| || ||||||||||||||||    
T  18544217 gtccctcaccggtggaccaccatgaataa-aattaagagctattagattaattgagttcatatatcttattatacac 18544142  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 372
Target Start/End: Original strand, 9830585 - 9830686
Alignment:
Q  270 gtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatcttattatacaccatatac 369  Q
    ||||||| ||||||| |||||||| || || |||| | | || ||||||||||||||||| |||||||||| ||||||  |||||||||||||  |||||    
T  9830585 gtgagggttcaattaagtccctcaccggtggacca-tcttaacaataattaagagtcatttgattaatcaaatacacaattcttattatacactgtatac 9830683  T
Q  370 act 372  Q
    |||    
T  9830684 act 9830686  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 372
Target Start/End: Complemental strand, 15288335 - 15288221
Alignment:
Q  257 ggtggattatagagtgagggatcaattacgtccctcatcgatgaaccactatgaataataattaagagtcattagattaatcaagtacacatatcttatt 356  Q
    |||| ||| ||| ||||||  ||||||| || ||||| |||||||||| | | ||  |||||||||||||||| |||||||||| ||||||  |||||||    
T  15288335 ggtgaattctagggtgaggattcaattaagttcctcaccgatgaacca-tcttaactataattaagagtcatttgattaatcaaatacacaattcttatt 15288237  T
Q  357 atacaccatatacact 372  Q
    ||||||  ||||||||    
T  15288236 atacactgtatacact 15288221  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 53242666 - 53242714
Alignment:
Q  257 ggtggattatagagtgagggatcaattacgtccctcatcgatgaaccac 305  Q
    |||||||||||| |||||| |||||||| ||||||||||| || |||||    
T  53242666 ggtggattatagggtgaggaatcaattaagtccctcatcggtggaccac 53242714  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 16718336 - 16718381
Alignment:
Q  328 ttagattaatcaagtacacatatcttattatacaccatatacacta 373  Q
    |||||||||||||| |||||||| |||||||||||| ||| |||||    
T  16718336 ttagattaatcaagcacacatattttattatacaccttatgcacta 16718381  T

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