View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_low_9 (Length: 412)
Name: NF5932_low_9
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 38013983 - 38014353
Alignment:
| Q |
17 |
tggagtcggtggatttgagtaacaataaaatctacggtacgctacctgtgggatttgcgaagctggagcttttgaaggagtttaatgtgagctacaataa |
116 |
Q |
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| T |
38013983 |
tggagtcggtggatttgagtaacaatagaatctacggtacgctacctgtgggatttgcgaagctggagcttttgaaggagtttaatgtgagctacaataa |
38014082 |
T |
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| Q |
117 |
tctgtgtggtaaaattccacaaggtggaaaactacaaagctttgatgagtcttgttatgctcataacaaatgcttgtgtgcccctcctcttccaccttgc |
216 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38014083 |
tctgtgtggtaaaattccacaacgtggaaaactacaaagctttgatgagtcttgttacgctcataacaaatgcttgtctgcccctcctcttccaccttgc |
38014182 |
T |
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| Q |
217 |
aagacttgatctgaatctgatgacaaaactatgtgaacggttttaaataaaaatgatggctgtcttagtttatttaagttcaaatccatataagagaagt |
316 |
Q |
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| T |
38014183 |
aagacttgatctgaatctgatgacaaaactatgtgaacggtttt-------aatgatggctgtcttagtttatttaagttcaaatccatataagagaagt |
38014275 |
T |
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| Q |
317 |
atattatgtttgatgtcatttggatagctaattaattactaatccctctgtgcatcatattatgtctctgtaaatcat |
394 |
Q |
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| T |
38014276 |
atattatgtttgatgtcatttggatagctaattaattactaatccctctgtgcatcatattatgtctctataaatcat |
38014353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 37697147 - 37696936
Alignment:
| Q |
25 |
gtggatttgagtaacaataaaatctacggtacgctacctgtgggatttgcgaagctggagcttttgaaggagtttaatgtgagctacaataatctgtgtg |
124 |
Q |
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| T |
37697147 |
gtggatttgaggaacaataaaatctatggtacgctacctaagggattgaggaagctgaagtttttgagtgaatttaatgtgagctacaatagtttgtgtg |
37697048 |
T |
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| Q |
125 |
gtaaaattccacaaggtggaaaactacaaagctttgatgagtcttgttatgctcataacaaatgcttgtgtgcccctcctcttccaccttgcaagacttg |
224 |
Q |
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|| | |||||| ||||||| || | ||||| |||||||||| ||||||||||||||| || |||||||||| | ||||||||| ||||||||| ||||| |
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| T |
37697047 |
gtgagattccaataggtggagaattgcaaaggtttgatgagtattgttatgctcataataagtgcttgtgtggctctcctcttcaaccttgcaacacttg |
37696948 |
T |
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| Q |
225 |
atctgaatctga |
236 |
Q |
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| T |
37696947 |
attcgaatctga |
37696936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 261
Target Start/End: Original strand, 37996250 - 37996435
Alignment:
| Q |
74 |
cgaagctggagcttttgaaggagtttaatgtgagctacaataatctgtgtggtaaaattccacaaggtggaaaactacaaagctttgatgagtcttg-tt |
172 |
Q |
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|||||||| | |||||||||||||||||||||||| | |||||| ||||||| | |||||| |||||||||||| |||||||||||| ||||||| || |
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| T |
37996250 |
cgaagctgaaacttttgaaggagtttaatgtgagcaataataatttgtgtggggagattccagtaggtggaaaactgcaaagctttgataagtcttgttt |
37996349 |
T |
|
| Q |
173 |
atgctcataacaaatgcttgtgtgcccctcctcttccaccttgcaagacttgatctgaatctgatgacaaaactatgtgaacggtttta |
261 |
Q |
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| T |
37996350 |
atgctcataataggtgtttgtgtggctctcctcttccaccttgcaagacttgaattgaat---atgacaaaaccatgtgacctgtttta |
37996435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 25326897 - 25327082
Alignment:
| Q |
40 |
aataaaatctacggtacgctacctgtgggatttgcgaagctggagcttttgaaggagtttaatgtgagctacaataatctgtgtggtaaaattccacaag |
139 |
Q |
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||||||||||||||| |||||||| |||| | | ||||| || |||||| || ||||| ||||||||||||||| |||||||| | |||||| || |
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| T |
25326897 |
aataaaatctacggtgcgctacctaagggactgacaaagctcaaggttttgagtgactttaacgtgagctacaataatttgtgtggtgagattccaatag |
25326996 |
T |
|
| Q |
140 |
gtggaaaactacaaagctttgatgagtcttgttatgctcataacaaatgcttgtgtgcccctcctcttccaccttgcaagacttga |
225 |
Q |
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| T |
25326997 |
gaggaaaattgcaaaactttaatgagtcttcttatgctcataataagtgcttgtgtggctctcctcttcgacattgtaagacttga |
25327082 |
T |
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