View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5933_high_12 (Length: 386)
Name: NF5933_high_12
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 368
Target Start/End: Original strand, 23091073 - 23091431
Alignment:
| Q |
10 |
aatatggcagaaacaaagttgagcagcttcaaagatcaaagatggtcactccgaggaatgacagccctagtgactggtggaaccagaggtttagggttag |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
23091073 |
aatatggcagaaacaaagttaagcagcttcaaagatcaaagatggtcactccaaggaatgacagctctagtgactggtggaacacgaggcttagggttag |
23091172 |
T |
|
| Q |
110 |
ttctctaatgcaaatatattatctctaatgagaacatgtaatgtaattaatcatgttaattttgtgattaatcaatcaggtatgcaattgtggaagagtt |
209 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23091173 |
ttctctaatgcaaatatcttatctcaaatgagaacatgtaatataatttatcatgttaattttgtgattaatcaatcaggtatgcaattgtggaagagtt |
23091272 |
T |
|
| Q |
210 |
agcagaatttggtgcaagtgtgcatatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggt |
309 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23091273 |
agcagaatttggggcaagtgtgcatatatgtgcaagaaatcaagatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggt |
23091372 |
T |
|
| Q |
310 |
tcaacttgtgatctattatttcgtgaacaacgtgaaaaattgatggaaactgttgcttc |
368 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23091373 |
tcaacttgtgatttattatttcgtgaacaacgtgaaaaattgatggaaactgttgcttc |
23091431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 37 - 368
Target Start/End: Original strand, 23063550 - 23063881
Alignment:
| Q |
37 |
ttcaaagatcaaagatggtcactccgaggaatgacagccctagtgactggtggaaccagaggtttagggttagttctctaatgcaaatatattatctcta |
136 |
Q |
| |
|
|||||||| |||| ||||||||| | ||||||||||| ||||| ||||||||||| |||| |||||| ||||||||||||||||||| ||||| ||| |
|
|
| T |
23063550 |
ttcaaagaccaaaaatggtcacttcatggaatgacagctctagtaactggtggaacacgaggcatagggtcagttctctaatgcaaatatcttatcacta |
23063649 |
T |
|
| Q |
137 |
atgagaacatgtaatgtaattaatcatgttaattttgtgattaatcaatcaggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgcatat |
236 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23063650 |
atgagaacatgtaatgtaatgaatcatgttaattttgtgattaatcaatcaggtatgcaattgtggaagagttagcagaatttggggcaagtgtgcatat |
23063749 |
T |
|
| Q |
237 |
atgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatctattatttcgtgaa |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
23063750 |
atgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatttattatttcatgac |
23063849 |
T |
|
| Q |
337 |
caacgtgaaaaattgatggaaactgttgcttc |
368 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||| |
|
|
| T |
23063850 |
caacgtcaaaagttgatggaaaccgttgcttc |
23063881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 23080166 - 23080542
Alignment:
| Q |
10 |
aatatggcagaaacaaagttgagcagcttcaaagatcaaagatggtcactccgaggaatgacagccctagtgactggtggaaccagaggtttagggttag |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||||| || |
|
|
| T |
23080166 |
aatatggcagaaacaaagttaagcagcttcaaagatcaaagatggtcactccaaggaatgacagctctagtgactggtggaacacgaggcatagggtcag |
23080265 |
T |
|
| Q |
110 |
ttctctaatgcaaatatattatctctaatgagaacatgtaatgtaattaatcatgttaatttt-------------------gtgattaatcaatcaggt |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||||||| |||| |
|
|
| T |
23080266 |
ttctctaatgcaaatatattatctctaatgagaacatgtaatgtaatttatcatcataattttattttgttttgtttcttttgtgaataatcaattaggt |
23080365 |
T |
|
| Q |
191 |
atgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaaggcaa |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23080366 |
atgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgcaatcaagaagatattaacaaatgtttggaagagtggaaaggcaa |
23080465 |
T |
|
| Q |
291 |
aggattttgtgtgacaggttcaacttgtgatctattatttcgtgaacaacgtgaaaaattgatggaaactgttgctt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
23080466 |
aggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacgtcaaaagttgatggaaactgttgctt |
23080542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 191 - 368
Target Start/End: Original strand, 23056497 - 23056674
Alignment:
| Q |
191 |
atgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaaggcaa |
290 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23056497 |
atgcaattgtggaagaattagtagaatttggggcaagggtgcatatatgtgcacgaaatcaagatgatattaacaaatgtttggaagagtggaaaggcaa |
23056596 |
T |
|
| Q |
291 |
aggattttgtgtgacaggttcaacttgtgatctattatttcgtgaacaacgtgaaaaattgatggaaactgttgcttc |
368 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||| |||||| |||| |||||| |||| | ||||||| ||||||||| |
|
|
| T |
23056597 |
aggattttgtgtaacagggtcagcttgtgatttattatcctgtgaccaacgtcaaaatctaatggaaaatgttgcttc |
23056674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 187 - 369
Target Start/End: Original strand, 23034896 - 23035078
Alignment:
| Q |
187 |
aggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaag |
286 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||| |||||||| ||||||||||||||||||||| |
|
|
| T |
23034896 |
aggtacgcaattgtggaagagttagcagaatttggagcagctgtgcatgtatgtgcacgtaatgaagaagatattaataaatgtttggaagagtggaaaa |
23034995 |
T |
|
| Q |
287 |
gcaaaggattttgtgtgacaggttcaacttgtgatctattatttcgtgaacaacgtgaaaaattgatggaaactgttgcttct |
369 |
Q |
| |
|
|||||| ||| ||| ||||| ||| |||||| ||||||||| ||||||||| ||| ||| |||||||||||| ||||| |
|
|
| T |
23034996 |
acaaagggtttaatgtaacaggatcagtatgtgatatattatttcatgaacaacgcaaaagattaatggaaactgtttcttct |
23035078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 187 - 369
Target Start/End: Original strand, 23026088 - 23026270
Alignment:
| Q |
187 |
aggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaag |
286 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| |
|
|
| T |
23026088 |
aggtacgcaattgttgaagagttagctgaatttggagcatctgtgcatatatgtgcacgtaatgaagaagatattaataaatgtttggaagagtggaaaa |
23026187 |
T |
|
| Q |
287 |
gcaaaggattttgtgtgacaggttcaacttgtgatctattatttcgtgaacaacgtgaaaaattgatggaaactgttgcttct |
369 |
Q |
| |
|
|||||| ||| ||| ||||| ||| |||||| || |||||| ||||||||| | ||| | |||||||||||| ||||| |
|
|
| T |
23026188 |
acaaagggtttaatgtaacaggatcagtatgtgatatactatttcatgaacaacgcaagaaactaatggaaactgtttcttct |
23026270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 23056314 - 23056388
Alignment:
| Q |
37 |
ttcaaagatcaaagatggtcactccgaggaatgacagccctagtgactggtggaaccagaggtttagggttagtt |
111 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||| || |||||||| |||||| |||| |||||| |||| |
|
|
| T |
23056314 |
ttcaaagatcaaagatggtcactccaagggaagacagctcttgtgactgggggaacccgaggcatagggtcagtt |
23056388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 23025761 - 23025840
Alignment:
| Q |
19 |
gaaacaaagttgagcagcttcaaagatcaaagatggtcactccgaggaatgacagccctagtgactggtggaaccagagg |
98 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||||||| | || ||||| || ||||||| ||||||||| |||| |
|
|
| T |
23025761 |
gaaacaaagttaagcagcttcaaggataaaagatggtcactacatggtatgactgcgttagtgacaggtggaacccgagg |
23025840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 23033799 - 23033839
Alignment:
| Q |
19 |
gaaacaaagttgagcagcttcaaagatcaaagatggtcact |
59 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
23033799 |
gaaacaaagttaagcagcttcaaggataaaagatggtcact |
23033839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University