View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_high_16 (Length: 330)
Name: NF5933_high_16
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 91 - 311
Target Start/End: Complemental strand, 13285702 - 13285477
Alignment:
| Q |
91 |
tcaacaaatcacaaccaattatttgtgtgacttcaatagtcctgtagtcattgtaatttaaatcacatatttgttaataatatgaaaggtatgcttgatt |
190 |
Q |
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| T |
13285702 |
tcaacaaatcacagctaattatttgtgtgattttaatagtccggtagtcattgtaatttaaatcacatatttgttaataatatgaaagttatgcttgatt |
13285603 |
T |
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| Q |
191 |
tttt-----gtgcaaatgtcgtcctattatttaatatgtttaaaattaaaattctgacttggtttctagtatagaattttcaaattgataagttatacca |
285 |
Q |
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| T |
13285602 |
ttttttcaagtacaaatgtcgtcctattatttaatatgtttaaaattaaaattatgacttggtttctactatagaatttccaaattgataagttataggt |
13285503 |
T |
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| Q |
286 |
aaattttattttaaatttttaatggg |
311 |
Q |
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| T |
13285502 |
aaattttattttaaatttttaatggg |
13285477 |
T |
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