View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5933_high_18 (Length: 304)

Name: NF5933_high_18
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5933_high_18
NF5933_high_18
[»] scaffold0002 (2 HSPs)
scaffold0002 (12-160)||(14677-14825)
scaffold0002 (193-289)||(14550-14645)
[»] chr7 (2 HSPs)
chr7 (12-160)||(28617179-28617328)
chr7 (216-268)||(27984372-27984424)
[»] scaffold0016 (1 HSPs)
scaffold0016 (15-88)||(102451-102524)
[»] chr2 (8 HSPs)
chr2 (37-160)||(16388449-16388574)
chr2 (32-160)||(2869667-2869796)
chr2 (32-140)||(27149268-27149377)
chr2 (15-86)||(28770731-28770802)
chr2 (27-89)||(18674370-18674432)
chr2 (190-286)||(3277870-3277966)
chr2 (53-89)||(5077797-5077833)
chr2 (222-289)||(23078637-23078704)
[»] chr1 (7 HSPs)
chr1 (15-133)||(32736953-32737072)
chr1 (27-160)||(35109506-35109639)
chr1 (27-89)||(918449-918511)
chr1 (15-85)||(10997026-10997096)
chr1 (32-89)||(11032294-11032351)
chr1 (24-89)||(48382447-48382512)
chr1 (32-89)||(8281384-8281441)
[»] chr3 (5 HSPs)
chr3 (24-160)||(29100153-29100291)
chr3 (32-127)||(4386891-4386987)
chr3 (37-89)||(5366293-5366345)
chr3 (211-280)||(34482074-34482143)
chr3 (24-60)||(25517077-25517113)
[»] chr6 (6 HSPs)
chr6 (12-89)||(30518082-30518159)
chr6 (24-89)||(1115070-1115135)
chr6 (103-160)||(31936581-31936638)
chr6 (32-89)||(33721533-33721590)
chr6 (222-289)||(22963564-22963631)
chr6 (222-289)||(23824762-23824829)
[»] chr8 (7 HSPs)
chr8 (38-83)||(8863604-8863649)
chr8 (32-80)||(5990535-5990583)
chr8 (213-286)||(7444645-7444717)
chr8 (32-89)||(11772007-11772064)
chr8 (32-81)||(34477193-34477242)
chr8 (32-80)||(9054811-9054859)
chr8 (14-80)||(7493129-7493195)
[»] chr5 (3 HSPs)
chr5 (32-100)||(30899922-30899990)
chr5 (201-289)||(34842469-34842556)
chr5 (32-140)||(33030914-33031023)
[»] chr4 (9 HSPs)
chr4 (32-85)||(37781932-37781985)
chr4 (33-80)||(39774280-39774327)
chr4 (24-89)||(4956245-4956310)
chr4 (24-89)||(18912329-18912394)
chr4 (36-110)||(873496-873571)
chr4 (32-75)||(34670639-34670682)
chr4 (32-80)||(1983274-1983322)
chr4 (25-89)||(21548822-21548886)
chr4 (33-89)||(39593794-39593850)
[»] scaffold0076 (1 HSPs)
scaffold0076 (32-89)||(15962-16019)


Alignment Details
Target: scaffold0002 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 14825 - 14677
Alignment:
Q  12 ataggtaggaactagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcataattgaacggaggttgctctctc 111  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14825 ataggtaggaactagggttagttctttgtgagcttttaagctaatttctcgtaacctctttgtatcactcttatcataattgatcggaggttgctctctc 14726  T
Q  112 tcccagagtatgtcattttggaccaaactatgtaaacaatattggtgtg 160  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||||    
T  14725 tcccatagtatgtcattttggaccaaattaggtaaacaatattggtgtg 14677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 14645 - 14550
Alignment:
Q  193 ctttgaacatgcttgagatgtttcttcatacttagatataggtatgtttattgttgtcgttgcttgagactactttgctaattgattaccacttcct 289  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||    
T  14645 ctttgaacatgcttgaggtgtttcttcatacttagatataggtatgtttgttgttgt-gttgcttgagactactttgctaattgattaacacttcct 14550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 28617179 - 28617328
Alignment:
Q  12 ataggtaggaactagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcataattgaacggag-gttgctctct 110  Q
    |||||||| || |||| || |||||||||||||||||||| |||||||| |||||| | |||||||||| | ||| || | ||  |||| | ||||||||    
T  28617179 ataggtagaaattaggttttgttctttgtgagcttttaagctaatttcttgtaaccccattgtatcactttcatcttagtggattggagagctgctctct 28617278  T
Q  111 ctcccagagtatgtcattttggaccaaactatgtaaacaatattggtgtg 160  Q
    | ||||||||| ||||| ||||||| ||||  ||||||||||||||||||    
T  28617279 cccccagagtaggtcatattggaccgaactgggtaaacaatattggtgtg 28617328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 27984424 - 27984372
Alignment:
Q  216 cttcatacttagatataggtatgtttattgttgtcgttgcttgagactacttt 268  Q
    ||||| ||||||||||| || ||||| ||||| ||||||||| ||||||||||    
T  27984424 cttcacacttagatataagtttgtttgttgttatcgttgcttaagactacttt 27984372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 102451 - 102524
Alignment:
Q  15 ggtaggaactagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcat 88  Q
    ||||| || ||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  102451 ggtagaaattagggtttgttttttgtgagcttttaagataatttcttgtaacctctttgtatcactcttatcat 102524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 16388449 - 16388574
Alignment:
Q  37 ttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcataattgaacggag-gttgctctctctcccagagtatgtca-ttttggac 134  Q
    ||||||||||||||| |||||||| ||||||||||| |||| ||||||||| | | ||| |||| | |||||||||  | |||||| |||| ||||||||    
T  16388449 ttgtgagcttttaagctaatttcttgtaacctctttctatctctcttatcaaagtggaaaggagagctgctctctcctctagagtaggtcatttttggac 16388548  T
Q  135 caaactatgtaaacaatattggtgtg 160  Q
    ||||||  ||||||||||||||||||    
T  16388549 caaactgggtaaacaatattggtgtg 16388574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 2869667 - 2869796
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcataattgaacggag-gttgctctctctcccagagtatgtcatttt 130  Q
    |||||||||||||||||||| |||||||| |||||  |||||||||||| | ||| || | ||  |||| | | ||||||| || |||||| ||||| ||    
T  2869667 gttctttgtgagcttttaagctaatttcttgtaactcctttgtatcactttcatcttagtggattggagagctactctctcccctagagtaggtcatatt 2869766  T
Q  131 ggaccaaactatgtaaacaatattggtgtg 160  Q
    ||||| ||||  ||||||||||||||||||    
T  2869767 ggaccgaactgggtaaacaatattggtgtg 2869796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 27149268 - 27149377
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcataattgaacggag-gttgctctctctcccagagtatgtcatttt 130  Q
    |||||||||||||||||||| |||||||| || ||| |||||||||||| | || ||| | ||  |||| | ||||||||| |||| |||| ||||| ||    
T  27149268 gttctttgtgagcttttaaggtaatttcttgttacccctttgtatcactttcattatagtggattggagagctgctctctcccccatagtaggtcatatt 27149367  T
Q  131 ggaccaaact 140  Q
    ||||||||||    
T  27149368 ggaccaaact 27149377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 28770731 - 28770802
Alignment:
Q  15 ggtaggaactagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatc 86  Q
    ||||| || ||| ||| |||||||||||||||||||| |||||||| ||||  ||||||||||| |||||||    
T  28770731 ggtagaaattagagtttgttctttgtgagcttttaagctaatttcttgtaatatctttgtatcattcttatc 28770802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 18674370 - 18674432
Alignment:
Q  27 ggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    |||| |||||||||||||||||||  |||||||| |||||| ||| ||||||||||| |||||    
T  18674370 ggtttgttctttgtgagcttttaaactaatttcttgtaaccccttggtatcactcttgtcata 18674432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 286
Target Start/End: Complemental strand, 3277966 - 3277870
Alignment:
Q  190 ttgctttgaacatgcttgagatgtttcttcatacttagatataggtatgtttattgttgtcgttgcttgagactactttgctaattgattaccactt 286  Q
    |||||||||| ||| |||   |||| ||||| |||||||| ||| | | ||| ||||||| ||| |||| || ||||||||||||||||||| ||||    
T  3277966 ttgctttgaatatgtttgtagtgttgcttcacacttagatctagatctatttgttgttgttgtttcttgtgattactttgctaattgattactactt 3277870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 5077833 - 5077797
Alignment:
Q  53 taatttctcgtaacctctttgtatcactcttatcata 89  Q
    |||||||| |||||| |||||||||||||||||||||    
T  5077833 taatttcttgtaaccactttgtatcactcttatcata 5077797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 23078637 - 23078704
Alignment:
Q  222 acttagatataggtatgtttattgttgtcgttgctt-gagactactttgctaattgattaccacttcct 289  Q
    |||||||| ||||||||||| ||||||| ||||||| ||||| ||||| |  |||||||||||||||||    
T  23078637 acttagatctaggtatgttttttgttgttgttgcttggagac-actttacacattgattaccacttcct 23078704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 32736953 - 32737072
Alignment:
Q  15 ggtaggaactagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcataattgaacggag-gttgctctctctc 113  Q
    ||||| || ||||||| ||||||| ||| |||||||| |||||| | ||||||||||||||||||  | |||||| |||| | ||| ||| |||||||||    
T  32736953 ggtagaaattagggtttgttctttatgaacttttaagctaattttttgtaacctctttgtatcaccttcatcatagttgatcagagagtttctctctctc 32737052  T
Q  114 ccagagtatgtcattttgga 133  Q
    |||||||| |||||||||||    
T  32737053 ccagagtaggtcattttgga 32737072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 35109506 - 35109639
Alignment:
Q  27 ggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcataattgaacggag-gttgctctctctcccagagtatgtc 125  Q
    |||| |||||||||||||||||||| |||||||| ||||||| ||||||||  |||||||||| | || | ||| | |  |||||| | |||| || |||    
T  35109506 ggtttgttctttgtgagcttttaagctaatttcttgtaacctatttgtatctatcttatcatagtggatcagagagcttgtctctc-ctcagattaggtc 35109604  T
Q  126 attttggaccaaactatgtaaacaatattggtgtg 160  Q
    |||||||||||||||  ||||||||||| ||||||    
T  35109605 attttggaccaaactgagtaaacaatatcggtgtg 35109639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 918449 - 918511
Alignment:
Q  27 ggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    |||| |||||||||||| || |||| |||||||| ||||  ||||||||||||||||||||||    
T  918449 ggtttgttctttgtgagtttgtaagataatttcttgtaatatctttgtatcactcttatcata 918511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 10997096 - 10997026
Alignment:
Q  15 ggtaggaactagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttat 85  Q
    ||||| || ||||||| ||| ||||| | ||||||||||||||||| ||||| | ||||||||||||||||    
T  10997096 ggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactcttat 10997026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 11032294 - 11032351
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    |||||||||||| ||||||  |||||||| ||||||||||| ||||||| ||||||||    
T  11032294 gttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcata 11032351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 48382447 - 48382512
Alignment:
Q  24 tagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    ||||||| | ||||||||| ||| ||||||||||||| ||||||| ||||||||||| | ||||||    
T  48382447 tagggtttgatctttgtgaacttgtaagttaatttcttgtaacctatttgtatcactttcatcata 48382512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 8281441 - 8281384
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    |||||||||||||  ||| |||||||||| ||||| | ||||||||| ||||||||||    
T  8281441 gttctttgtgagcgattatgttaatttcttgtaacatatttgtatcattcttatcata 8281384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 29100291 - 29100153
Alignment:
Q  24 tagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactctt-atcataattgaacggag-gttgctctctctcccagagta 121  Q
    ||||||| |||||||||||| ||||||| ||||||||  ||||||||||||||||||||| |||||| | ||| |||| | ||||||||  || | |||     
T  29100291 tagggtttgttctttgtgagtttttaagctaatttcttataacctctttgtatcactctttatcatagtggaatggagagctgctctcttccctatagtg 29100192  T
Q  122 tgtcattttggaccaaactatgtaaacaatattggtgtg 160  Q
     || |||||||||| ||||  ||||||||||||||||||    
T  29100191 ggtaattttggaccgaactgggtaaacaatattggtgtg 29100153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 4386891 - 4386987
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcataattgaacggag-gttgctctctctcccagagtatgtcat 127  Q
    |||||||||||||||||||| |||||||| ||||||  ||||||||||| ||||| || | ||  |||| | ||||||||| ||||||||| |||||    
T  4386891 gttctttgtgagcttttaagctaatttcttgtaacccatttgtatcacttttatcttattggattggagagctgctctctcccccagagtaggtcat 4386987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 5366293 - 5366345
Alignment:
Q  37 ttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||| | ||||||    
T  5366293 ttgtgagattttaagataatttcttgtaacctctttgtatcactttcatcata 5366345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 34482143 - 34482074
Alignment:
Q  211 tgtttcttcatacttagatataggtatgtttattgttgtcgttgcttgagactactttgctaattgatta 280  Q
    |||| ||||| |||| ||| ||||| ||||| ||||||  ||||||||| ||||||||||| ||||||||    
T  34482143 tgttacttcacactttgatctaggtctgtttgttgttgatgttgcttgaaactactttgctcattgatta 34482074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 25517113 - 25517077
Alignment:
Q  24 tagggttagttctttgtgagcttttaagttaatttct 60  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  25517113 tagggtttgttctttgtgagcttttaagctaatttct 25517077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 30518082 - 30518159
Alignment:
Q  12 ataggtaggaactagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    |||||||| || || |||| ||||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||||    
T  30518082 ataggtagaaattaaggtttgttctttgtgaacttttaagttagtttcatgtaacctctttgtatcactcttatcata 30518159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 1115070 - 1115135
Alignment:
Q  24 tagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    ||||||| ||| ||| |||||||||||||| |||||| ||||||| ||||||||| ||||||||||    
T  1115070 tagggtttgttatttttgagcttttaagttgatttcttgtaacctatttgtatcattcttatcata 1115135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 31936638 - 31936581
Alignment:
Q  103 tgctctctctcccagagtatgtcattttggaccaaactatgtaaacaatattggtgtg 160  Q
    |||||||||||||||| || ||||| ||||||| ||||| || |||||| ||||||||    
T  31936638 tgctctctctcccagactaggtcatattggaccgaactaggtcaacaatcttggtgtg 31936581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 33721533 - 33721590
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    ||||||| |||| ||||||  |||||||| ||||||||||||||| | ||||||||||    
T  33721533 gttctttatgagtttttaaactaatttcttgtaacctctttgtataattcttatcata 33721590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 22963631 - 22963564
Alignment:
Q  222 acttagatataggtatgtttattgttgtcgttgcttg-agactactttgctaattgattaccacttcct 289  Q
    |||||||| ||||| ||||| ||||||| |||||||| |||| |||||  |||||||||||||||||||    
T  22963631 acttagatctaggtctgttttttgttgttgttgcttggagac-actttattaattgattaccacttcct 22963564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 23824762 - 23824829
Alignment:
Q  222 acttagatataggtatgtttattgttgtcgttgcttg-agactactttgctaattgattaccacttcct 289  Q
    |||||||| ||||| ||||| ||||||| |||||||| |||| |||||  |||||||||||||||||||    
T  23824762 acttagatctaggtctgttttttgttgttgttgcttggagac-actttattaattgattaccacttcct 23824829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 8863604 - 8863649
Alignment:
Q  38 tgtgagcttttaagttaatttctcgtaacctctttgtatcactctt 83  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  8863604 tgtgagcttttaagttaatttcttgtaacctctttgtatcactctt 8863649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 5990535 - 5990583
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcact 80  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||||    
T  5990535 gttctttgtgagcttttaagctaatttcttgtaacatctttgtatcact 5990583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 7444717 - 7444645
Alignment:
Q  213 tttcttcatacttagatataggtatgtttattgttgtcgttgcttgagactactttgctaattgattaccactt 286  Q
    ||||||||||||||||||||||| || |||||||||| |||||||||  ||||| || | ||||||||| ||||    
T  7444717 tttcttcatacttagatataggtttg-ttattgttgttgttgcttgaagctactatgattattgattactactt 7444645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 11772064 - 11772007
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    ||||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||||    
T  11772064 gttctttgtgaacttgtaaactaatttcttttaacctctttgtatcactcttatcata 11772007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 34477193 - 34477242
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactc 81  Q
    |||||||||||| || |||||||||||||  |||||||||||||||||||    
T  34477193 gttctttgtgagtttgtaagttaatttcttttaacctctttgtatcactc 34477242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 9054811 - 9054859
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcact 80  Q
    |||||||||| ||||||||| |||||||| |||||| ||||||||||||    
T  9054811 gttctttgtgcgcttttaagctaatttcttgtaaccactttgtatcact 9054859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 7493129 - 7493195
Alignment:
Q  14 aggtaggaactagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcact 80  Q
    |||||| || |||| || ||||| |||||||||||| ||||||||||  |||| |||||||||||||    
T  7493129 aggtagaaattaggttttgttctgtgtgagcttttatgttaatttcttataacttctttgtatcact 7493195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 30899990 - 30899922
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcataattgaacggag 100  Q
    ||||||||||||||| || | |||||||| |||||||||||||||||||||| ||||||| || |||||    
T  30899990 gttctttgtgagcttgtaggctaatttcttgtaacctctttgtatcactcttctcataatagatcggag 30899922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 34842556 - 34842469
Alignment:
Q  201 atgcttgagatgtttcttcatacttagatataggtatgtttattgttgtcgttgcttgagactactttgctaattgattaccacttcct 289  Q
    ||||||| | |||| ||||| |||||||| ||||| ||||||||||||| | |||||||| ||||||| ||  |||||||| |||||||    
T  34842556 atgcttgtggtgttgcttcacacttagatctaggtttgtttattgttgttgctgcttgaggctactttact-cttgattactacttcct 34842469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 33030914 - 33031023
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcataattgaacggag-gttgctctctctcccagagtatgtcatttt 130  Q
    |||||||||||||||||||| |||||||| |||||| | ||| |||||| | ||| || |  |  |||| | ||||||||| ||||||||||||||| ||    
T  33030914 gttctttgtgagcttttaagctaatttcttgtaaccccattgcatcactttcatcttagtgaattggagagctgctctctcccccagagtatgtcatatt 33031013  T
Q  131 ggaccaaact 140  Q
     |||| ||||    
T  33031014 tgaccgaact 33031023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 37781985 - 37781932
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttat 85  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||    
T  37781985 gttctttgtgagtttttaagctaatttcttgtaacctctttgtatcacttttat 37781932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 39774280 - 39774327
Alignment:
Q  33 ttctttgtgagcttttaagttaatttctcgtaacctctttgtatcact 80  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||||    
T  39774280 ttctttgtgagcttttaagctaatttcttgtaacctatttgtatcact 39774327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 4956310 - 4956245
Alignment:
Q  24 tagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    ||||||| ||||||| |||| |||| || |||||||| ||||||||||| ||||| ||||||||||    
T  4956310 tagggtttgttctttatgagttttttagctaatttcttgtaacctctttttatcattcttatcata 4956245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 18912329 - 18912394
Alignment:
Q  24 tagggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    ||||||| |||||||||||| || |||  |||||||| ||| ||| ||||||||||||||||||||    
T  18912329 tagggtttgttctttgtgagtttgtaaactaatttcttgtatcctttttgtatcactcttatcata 18912394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 873496 - 873571
Alignment:
Q  36 tttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcataattgaacggag-gttgctctct 110  Q
    |||| |||||||||||||||||||| ||||||| || |||||| ||| |||||| | || ||||| ||||||||||    
T  873496 tttgcgagcttttaagttaatttcttgtaacctattggtatcattctaatcatagtggatcggagagttgctctct 873571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 34670639 - 34670682
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgta 75  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||    
T  34670639 gttctttgtgagctattaagctaatttcttgtaacctctttgta 34670682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 1983274 - 1983322
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcact 80  Q
    |||||||||||||||  ||| |||||||| |||||| ||||||||||||    
T  1983274 gttctttgtgagcttgcaagctaatttcttgtaacccctttgtatcact 1983322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 21548822 - 21548886
Alignment:
Q  25 agggttagttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    |||||| ||||||||||| |||  || || |||||| | ||||||| ||||||||||||||||||    
T  21548822 agggtttgttctttgtgaacttagaaattgatttcttgcaacctctgtgtatcactcttatcata 21548886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 39593850 - 39593794
Alignment:
Q  33 ttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    ||||||||||| || |||  |||||||| ||||| | ||||||||||||||||||||    
T  39593850 ttctttgtgagtttgtaaactaatttcttgtaacttatttgtatcactcttatcata 39593794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 15962 - 16019
Alignment:
Q  32 gttctttgtgagcttttaagttaatttctcgtaacctctttgtatcactcttatcata 89  Q
    |||||||||| | ||||||| |||||||| ||||| ||||||||| ||||||||||||    
T  15962 gttctttgtgggtttttaagctaatttcttgtaacatctttgtataactcttatcata 16019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University