View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5933_high_28 (Length: 236)
Name: NF5933_high_28
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_high_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 1023988 - 1024206
Alignment:
| Q |
5 |
tctatcctaagaatagaggactgtgctctatacatctaaacctaagttacttctccagaagagaaatcttgaaactcaactctcttccactacctttagt |
104 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1023988 |
tctatcccaagaatagaggactgtgttgtatacatctaaacctaagttacttctccagaagaggaatcttgaaactcaactctcttccactacatttagt |
1024087 |
T |
|
| Q |
105 |
aatttgactattatcaatctgatcaactttatccattacattatttatatgtattctctctacatgttcaaacgatctaaatcaaaattttacattatta |
204 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |
|
|
| T |
1024088 |
aatttgactattatcaatttgattaactttatccattacattatttatatgtattctctctacatgatcaaacgatctaaatcaaattttcacattatta |
1024187 |
T |
|
| Q |
205 |
tattatatatgataagtgt |
223 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1024188 |
tattatatatgataagtgt |
1024206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 6943370 - 6943424
Alignment:
| Q |
33 |
tatacatctaaacctaagttacttctccagaagagaaatcttgaaactcaactct |
87 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6943370 |
tatacatctaaacctgagttacttctccagaagaggaatcttgaaactcaactct |
6943424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 5598074 - 5598128
Alignment:
| Q |
33 |
tatacatctaaacctaagttacttctccagaagagaaatcttgaaactcaactct |
87 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
5598074 |
tatacatctaaacctgggttacttctccagaagaggaatattgaaactcaactct |
5598128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 18303718 - 18303664
Alignment:
| Q |
33 |
tatacatctaaacctaagttacttctccagaagagaaatcttgaaactcaactct |
87 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18303718 |
tatacatctaaacctgagttacttctccagaagaggaatcttgaaactcaactct |
18303664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 18031603 - 18031657
Alignment:
| Q |
33 |
tatacatctaaacctaagttacttctccagaagagaaatcttgaaactcaactct |
87 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
18031603 |
tatacatctaaacctgagttacttctctagaagaggaatcttgaaactcaactct |
18031657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 26330559 - 26330511
Alignment:
| Q |
38 |
atctaaacctaagttacttctccagaagagaaatcttgaaactcaactc |
86 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
26330559 |
atctaaacctgagtttgttctccagaagaggaatcttgagactcaactc |
26330511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 37874238 - 37874292
Alignment:
| Q |
33 |
tatacatctaaacctaagttacttctccagaagagaaatcttgaaactcaactct |
87 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
37874238 |
tatacatctaaacctgagttacttctctagaagaggaatcttgaaactcaactct |
37874292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 13515346 - 13515384
Alignment:
| Q |
49 |
agttacttctccagaagagaaatcttgaaactcaactct |
87 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13515346 |
agttacttctccagaagaggaatcttgaaactcaactct |
13515384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 13604879 - 13604917
Alignment:
| Q |
49 |
agttacttctccagaagagaaatcttgaaactcaactct |
87 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13604879 |
agttacttctccagaagaggaatcttgaaactcaactct |
13604917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University