View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_high_5 (Length: 503)
Name: NF5933_high_5
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 6 - 488
Target Start/End: Complemental strand, 5445566 - 5445084
Alignment:
| Q |
6 |
aggagcagagataacagcattgttcacttcatgacccaaataagtttcagcaacttcctttaacttagacaacaccatggaagatatctcttgaggtgaa |
105 |
Q |
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| T |
5445566 |
aggaacagtgataacagcattgttcacttcatgacccaaataagtttcagcaacttcctttaacttagacaacaccatggaagatatctcttgaggtgaa |
5445467 |
T |
|
| Q |
106 |
aaatgtttctcttggcctttgtaattgacaacaatcatgggtttgtctttgtggttcggaacaactttaaaaggccaaagctttatgtcttgttggactg |
205 |
Q |
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| T |
5445466 |
aaatgtttctcttggcctttgtaattgacaacaatcatgggtttgtctttgtggttcggaacaactttaaaaggccaaagctttatgtcttgttggactg |
5445367 |
T |
|
| Q |
206 |
tttggtcagagaatcgacggccaatcagacgtttggcatcaaaaacagtgttgtggggatttttggctaattggtttttggcagcatcgcctattaatct |
305 |
Q |
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| T |
5445366 |
tttggtcagagaatcgacggccaatcagacgtttggcatcaaaaacagtgttgtggggatatttggctaattggtttttggcagcatcgcctattaatct |
5445267 |
T |
|
| Q |
306 |
ttcagtgtcggtgaaggcaacgtaagaaggggtgacacggttcccttggtcgtttggaatgatctcaacacgattgtttcgccacactgcaatgcagctg |
405 |
Q |
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| T |
5445266 |
ttcagtgtcagtgaaggcaacgtaagaaggggtgacacggttcccttggtcgtttggaatgatctcaacacgattgtttcgccacactgcaatgcagctg |
5445167 |
T |
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| Q |
406 |
tagcttgtaccaaggtcaatgcctatggctttgctttttcttgttgccattgcacttaatttgagaggagagaacaaaagaag |
488 |
Q |
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| T |
5445166 |
tagcttgtaccaaggtcaatgcctatggctttgctttttcttgttgccattgcacttaatttgagaggagagaacaaaagaag |
5445084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 350 - 454
Target Start/End: Original strand, 5440993 - 5441097
Alignment:
| Q |
350 |
cttggtcgtttggaatgatctcaacacgattgtttcgccacactgcaatgcagctgtagcttgtaccaaggtcaatgcctatggctttgctttttcttgt |
449 |
Q |
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| T |
5440993 |
cttggtcgtttggaatgatctcaacatgattgtgttgccactctcaaatgcagctgtaggttgtgccaatgtcgatgccaatggcttttctttttgttat |
5441092 |
T |
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| Q |
450 |
tgcca |
454 |
Q |
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||||| |
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| T |
5441093 |
tgcca |
5441097 |
T |
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