View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_high_6 (Length: 481)
Name: NF5933_high_6
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 50707340 - 50706939
Alignment:
| Q |
19 |
cattctattgatgatatggctttggcatctcttgagcaatttaagacttctttgaaaaaattgaagcttaatttagatgcatctttgcaagggaaagaga |
118 |
Q |
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| T |
50707340 |
cattctattgatgatatggctttggaatctcttaagcaatttaagacttctttgaaaaaattgaagcttaatttagatgcatctttgcaagggaaagaga |
50707241 |
T |
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| Q |
119 |
ttcacatgaattcatgttcctcgtcaacttccaatattatataactattcaatcttcaataacactacaaacaggtgtgataggaggagaggtcttagta |
218 |
Q |
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| T |
50707240 |
ttcacatgaattcatgttcctcgtcaacttccaatattatataactattcaatcttcaataacactacaaacaggtgtgataggaagagaggtcttagta |
50707141 |
T |
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| Q |
219 |
gcagtgctag---nnnnnnnnnnnnnnnagagaaaagataatagtagtgctagttttatggttcctgattttggacactataggcatgaattgctatatt |
315 |
Q |
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| T |
50707140 |
gtagtgctagttttttttttttttttttagagaaaagataatagtagtgctagttttatggttcctgattttggacactataggcatgaattgctatatt |
50707041 |
T |
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| Q |
316 |
agttttggttgggtgggtagcatatttcaatttgtttaaagttttttcgtatgttcgatgtcaacattctcttcaaaaataaaatatattatgtgtttat |
415 |
Q |
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| T |
50707040 |
agttttggttgggt-agtagcatatttcaatttgtttaaagttttttcgtatgttcgatgtcaacattctctttaaaaataaaatatattatgtgtttat |
50706942 |
T |
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| Q |
416 |
gtt |
418 |
Q |
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| T |
50706941 |
gtt |
50706939 |
T |
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Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 8167270 - 8167179
Alignment:
| Q |
19 |
cattctattgatgatatggctttggcatctcttgagcaatttaagacttctttgaaaaaattgaagcttaatttagatgcatctttgcaagg |
110 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
8167270 |
cattctattgatgatatggctttggaatctcttgagcaatttaagacttctttggtaaaattgaagcttaatttagatgcatccttgcaagg |
8167179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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