View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_low_1 (Length: 651)
Name: NF5933_low_1
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 78 - 629
Target Start/End: Original strand, 43062205 - 43062753
Alignment:
| Q |
78 |
gaaatacgtagtaacacactggtatcagagctcccaaaagatcataggagtcatgcaaccttccatattgctttgatatgttgatctgttttttcataaa |
177 |
Q |
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| T |
43062205 |
gaaatacgtagcaacacactggtatcagagctcccaaaagatcataggagtcatgcaaccttccatattgctttgatatgttgatctgttttttcataaa |
43062304 |
T |
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| Q |
178 |
atctagttccgatttccaatgttttttgtcactgattcgtattactgacctctgtattgcataatgttgtcttaacttctttacgttacaatctgctatt |
277 |
Q |
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| T |
43062305 |
atctagttccgatttccaatgttttttgtcactgattcgtattattgacctctgtattgcataatgttgtcttaacttctttacgttacaatctgctatt |
43062404 |
T |
|
| Q |
278 |
tggtttctgtattcgggcataggttattaactatcaaaattatgctaggaaaaagaccatttatccaaaagagtctgagccgaagttatgtaaccgttat |
377 |
Q |
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| T |
43062405 |
tggtttctgtattcgggcataggttattaactatcaaaattttgctaggaaaaagaccatttatccaaaagagtctgagccgaagttatgtaaccgttat |
43062504 |
T |
|
| Q |
378 |
gaaatatgacatcagttatagtagttaatgcgttattatagtccttcctaacactacccnnnnnnnnnngtctttcgcactcgattatcacttaactttt |
477 |
Q |
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| T |
43062505 |
gaaatatgacatcagttatagtagttaatgcgttattatagtccttcctaacactaccc---tttttttgtctttcgcacttgattatcacttaactttt |
43062601 |
T |
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| Q |
478 |
ctcacaagcatttttgtgacatgcttccaactttgcaaaatttgaaaagaaatgtggtcttgaagataaatttggatgagtactgatcatagggactttc |
577 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43062602 |
ctcacaagcatttttgtgacatgcttccaactttgcaaaatttgaaaagaaatgtggtcttgaagataaatttggatgagtactgatcatagggactttc |
43062701 |
T |
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| Q |
578 |
tttcactcctatatttattagtttacctttttgaaggaatcgtaattgaatc |
629 |
Q |
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| T |
43062702 |
tttcactcctatatttattagtttacctttttgaaggaatcgtaattgaatc |
43062753 |
T |
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