View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5933_low_10 (Length: 416)

Name: NF5933_low_10
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5933_low_10
NF5933_low_10
[»] chr7 (7 HSPs)
chr7 (156-412)||(8405530-8405794)
chr7 (5-57)||(8405371-8405423)
chr7 (5-56)||(48089239-48089290)
chr7 (256-319)||(20046539-20046602)
chr7 (256-331)||(28014305-28014380)
chr7 (7-45)||(10702749-10702787)
chr7 (5-50)||(10703154-10703199)
[»] chr2 (3 HSPs)
chr2 (6-56)||(18458779-18458829)
chr2 (5-50)||(6141465-6141510)
chr2 (5-50)||(2081712-2081757)
[»] chr4 (2 HSPs)
chr4 (5-50)||(2185212-2185257)
chr4 (9-48)||(2201255-2201294)
[»] chr6 (2 HSPs)
chr6 (256-331)||(5377002-5377077)
chr6 (256-331)||(5378857-5378932)
[»] chr3 (3 HSPs)
chr3 (256-331)||(17402814-17402889)
chr3 (9-50)||(8034760-8034801)
chr3 (8-56)||(7728951-7728999)
[»] chr1 (2 HSPs)
chr1 (5-48)||(42311512-42311555)
chr1 (272-319)||(5924830-5924877)
[»] chr8 (1 HSPs)
chr8 (5-51)||(18075803-18075849)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 156 - 412
Target Start/End: Original strand, 8405530 - 8405794
Alignment:
Q  156 gaagttatccgccattaacacctgtaagaatataaagcttcaattctcaatctaaaag-tattaatggggataagttcttgatctaatggttggttagtt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  8405530 gaagttatccgccattaacacctgtaagaatataaagcttcaattctcaatctaaaaggtattaatggggataagttctcaatctaatggttggttagtt 8405629  T
Q  255 gtcaatctagtcatttttataatgagtttctacgattatctcccatataaatactcttatgcttgttattttgctta-------gacccttcacattttg 347  Q
     ||||||||||||||| || ||||||||||||||||||||||||  || |||||||||||||||| |||||||||||       || | ||| || ||||    
T  8405630 atcaatctagtcatttctacaatgagtttctacgattatctcccccatgaatactcttatgcttgctattttgcttacatatatgatctttcgcactttg 8405729  T
Q  348 gttccatgattcataacacttcaatgtagcatactttttgacatgtttaacagttcagatatgca 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8405730 gttccatgattcataacacttcaatgtagcatactttttgacatgtttaacagttcagatatgca 8405794  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 8405371 - 8405423
Alignment:
Q  5 cgagtttttgtgtttcttacccaatctcgacaagaataatatttgttaattac 57  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  8405371 cgagtttttgtgtttattacccaatctcgacaagaataatatttgctaattac 8405423  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 48089290 - 48089239
Alignment:
Q  5 cgagtttttgtgtttcttacccaatctcgacaagaataatatttgttaatta 56  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||| ||||    
T  48089290 cgagtttttgtgtttcttacacaatctcaacaagaataatatttgttgatta 48089239  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 20046602 - 20046539
Alignment:
Q  256 tcaatctagtcatttttataatgagtttctacgattatctcccatataaatactcttatgcttg 319  Q
    |||||||| |||||| || |||||||||||| || ||||||||| || | ||||||||||||||    
T  20046602 tcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttg 20046539  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 28014380 - 28014305
Alignment:
Q  256 tcaatctagtcatttttataatgagtttctacgattatctcccatataaatactcttatgcttgttattttgctta 331  Q
    |||||||| |||||| || |||||||||||| || ||||||||| || |  ||||||||||||| ||| |||||||    
T  28014380 tcaatctattcatttctacaatgagtttctatgagtatctcccacatgagcactcttatgcttgctatcttgctta 28014305  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 10702787 - 10702749
Alignment:
Q  7 agtttttgtgtttcttacccaatctcgacaagaataata 45  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  10702787 agtttttgtgtttcttacacaatctcgacgagaataata 10702749  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 10703154 - 10703199
Alignment:
Q  5 cgagtttttgtgtttcttacccaatctcgacaagaataatatttgt 50  Q
    |||||||||||||||||||  |||||||| | ||||||||||||||    
T  10703154 cgagtttttgtgtttcttatacaatctcgtcgagaataatatttgt 10703199  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 18458829 - 18458779
Alignment:
Q  6 gagtttttgtgtttcttacccaatctcgacaagaataatatttgttaatta 56  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| |||||    
T  18458829 gagtttttgtgtttcttacacaatctcgacgagaataatatttgtaaatta 18458779  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 6141510 - 6141465
Alignment:
Q  5 cgagtttttgtgtttcttacccaatctcgacaagaataatatttgt 50  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||    
T  6141510 cgagtttttgtgtttcttacacaatctcgacgagaataatatttgt 6141465  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 2081712 - 2081757
Alignment:
Q  5 cgagtttttgtgtttcttacccaatctcgacaagaataatatttgt 50  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||    
T  2081712 cgagtttttgtgtttcttagacaatctcgacgagaataatatttgt 2081757  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 2185257 - 2185212
Alignment:
Q  5 cgagtttttgtgtttcttacccaatctcgacaagaataatatttgt 50  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  2185257 cgagtttttgtgtttcttacacaatctcaacaagaataatatttgt 2185212  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 2201255 - 2201294
Alignment:
Q  9 tttttgtgtttcttacccaatctcgacaagaataatattt 48  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  2201255 tttttgtgtttcttacacaatctcgacaagaataatattt 2201294  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 5377002 - 5377077
Alignment:
Q  256 tcaatctagtcatttttataatgagtttctacgattatctcccatataaatactcttatgcttgttattttgctta 331  Q
    |||||||| |||||| || |||||||||||| || ||||||||| || | |||||||||||||| ||| |||||||    
T  5377002 tcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgctta 5377077  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 5378857 - 5378932
Alignment:
Q  256 tcaatctagtcatttttataatgagtttctacgattatctcccatataaatactcttatgcttgttattttgctta 331  Q
    |||||||| |||||| || |||||||||||| || ||||||||| || | |||||||||||||| ||| |||||||    
T  5378857 tcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgctta 5378932  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 17402889 - 17402814
Alignment:
Q  256 tcaatctagtcatttttataatgagtttctacgattatctcccatataaatactcttatgcttgttattttgctta 331  Q
    |||||||| |||||| || |||||||||||| || ||||||||| || | |||||||||||||| ||| |||||||    
T  17402889 tcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgctta 17402814  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 8034801 - 8034760
Alignment:
Q  9 tttttgtgtttcttacccaatctcgacaagaataatatttgt 50  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  8034801 tttttgtgtttcttacacaatctcgacgagaataatatttgt 8034760  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 7728951 - 7728999
Alignment:
Q  8 gtttttgtgtttcttacccaatctcgacaagaataatatttgttaatta 56  Q
    ||||||||||||||||| ||||||| || | ||||||||||||| ||||    
T  7728951 gtttttgtgtttcttacacaatctcaacgataataatatttgttgatta 7728999  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 42311512 - 42311555
Alignment:
Q  5 cgagtttttgtgtttcttacccaatctcgacaagaataatattt 48  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  42311512 cgagtttttgtgtttcttacacaatctcgacgagaataatattt 42311555  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 5924877 - 5924830
Alignment:
Q  272 tataatgagtttctacgattatctcccatataaatactcttatgcttg 319  Q
    ||||||||||||||| || ||||||| |||| ||||||||||||||||    
T  5924877 tataatgagtttctatgagtatctcctatatgaatactcttatgcttg 5924830  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 18075849 - 18075803
Alignment:
Q  5 cgagtttttgtgtttcttacccaatctcgacaagaataatatttgtt 51  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||||    
T  18075849 cgagtttttgtgtttcttacacaatcttgacgagaataatatttgtt 18075803  T

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