View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_low_11 (Length: 389)
Name: NF5933_low_11
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 85 - 374
Target Start/End: Original strand, 37893806 - 37894095
Alignment:
| Q |
85 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaa |
184 |
Q |
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| T |
37893806 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaa |
37893905 |
T |
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| Q |
185 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagttgctgnnnnnnngtcattgactatggaaatg |
284 |
Q |
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| T |
37893906 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagttgctgaaaaaaagtcattgactatggaaatg |
37894005 |
T |
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| Q |
285 |
gtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtg |
374 |
Q |
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| T |
37894006 |
gtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtg |
37894095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 85 - 374
Target Start/End: Original strand, 37188904 - 37189192
Alignment:
| Q |
85 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaa |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37188904 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtacatcaagaaccaaacaaagaaattgaagaagtgtctcaaaggaa |
37189003 |
T |
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| Q |
185 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagttgctgnnnnnnngtcattgactatggaaatg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
37189004 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagtatacg-aaaaaagtcattgactatggaaatg |
37189102 |
T |
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| Q |
285 |
gtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189103 |
gtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtg |
37189192 |
T |
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