View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5933_low_13 (Length: 349)

Name: NF5933_low_13
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5933_low_13
NF5933_low_13
[»] chr4 (9 HSPs)
chr4 (59-341)||(25201464-25201744)
chr4 (137-339)||(13957478-13957681)
chr4 (62-331)||(51758632-51758901)
chr4 (137-339)||(42511386-42511586)
chr4 (174-339)||(10142410-10142576)
chr4 (257-339)||(14192065-14192147)
chr4 (163-339)||(51337817-51337997)
chr4 (205-339)||(28143196-28143333)
chr4 (60-298)||(20151992-20152231)
[»] chr7 (13 HSPs)
chr7 (59-339)||(39038311-39038589)
chr7 (60-339)||(43178647-43178923)
chr7 (183-339)||(24441706-24441864)
chr7 (205-339)||(6195668-6195805)
chr7 (163-339)||(6189152-6189332)
chr7 (257-339)||(19311691-19311773)
chr7 (163-339)||(48636868-48637048)
chr7 (257-339)||(8069846-8069928)
chr7 (181-322)||(23305504-23305648)
chr7 (263-322)||(8113566-8113625)
chr7 (163-339)||(48238625-48238804)
chr7 (137-273)||(8113640-8113778)
chr7 (174-247)||(14573995-14574068)
[»] chr8 (12 HSPs)
chr8 (60-339)||(11648157-11648435)
chr8 (59-339)||(960728-961008)
chr8 (185-291)||(35824166-35824273)
chr8 (235-339)||(602175-602280)
chr8 (181-339)||(11994463-11994623)
chr8 (137-255)||(9381946-9382062)
chr8 (187-269)||(32073462-32073545)
chr8 (257-339)||(2878957-2879039)
chr8 (257-339)||(6927306-6927388)
chr8 (257-339)||(28509524-28509606)
chr8 (257-339)||(28516731-28516813)
chr8 (80-247)||(24683070-24683231)
[»] chr6 (7 HSPs)
chr6 (59-321)||(1830844-1831104)
chr6 (137-339)||(11680517-11680720)
chr6 (173-333)||(14677914-14678076)
chr6 (257-339)||(33516375-33516457)
chr6 (173-339)||(4064985-4065150)
chr6 (183-298)||(14679000-14679116)
chr6 (278-331)||(1831137-1831190)
[»] chr5 (8 HSPs)
chr5 (59-333)||(5120580-5120856)
chr5 (137-339)||(43171066-43171267)
chr5 (59-219)||(23318168-23318327)
chr5 (173-326)||(26402144-26402295)
chr5 (173-339)||(14651489-14651656)
chr5 (163-339)||(7850480-7850660)
chr5 (257-339)||(38491310-38491392)
chr5 (59-121)||(33922260-33922322)
[»] chr1 (12 HSPs)
chr1 (59-219)||(12783770-12783929)
chr1 (73-290)||(47397224-47397437)
chr1 (185-333)||(12028035-12028183)
chr1 (185-322)||(5208454-5208592)
chr1 (221-339)||(48646236-48646355)
chr1 (163-339)||(36296868-36297048)
chr1 (163-339)||(42722403-42722583)
chr1 (205-339)||(28945560-28945697)
chr1 (257-339)||(26221954-26222036)
chr1 (256-326)||(49228403-49228473)
chr1 (221-326)||(35501355-35501460)
chr1 (208-255)||(12783628-12783675)
[»] chr3 (6 HSPs)
chr3 (137-331)||(47185206-47185401)
chr3 (257-339)||(6024505-6024587)
chr3 (163-339)||(23044645-23044825)
chr3 (205-339)||(31884705-31884842)
chr3 (203-256)||(44879476-44879529)
chr3 (263-339)||(44879802-44879878)
[»] chr2 (17 HSPs)
chr2 (181-339)||(25621723-25621882)
chr2 (137-322)||(14904265-14904451)
chr2 (59-228)||(6883446-6883607)
chr2 (137-326)||(38422322-38422512)
chr2 (173-339)||(90080-90248)
chr2 (59-160)||(25415789-25415890)
chr2 (257-339)||(2565866-2565948)
chr2 (257-339)||(18780924-18781006)
chr2 (205-339)||(19678245-19678382)
chr2 (257-339)||(6271355-6271437)
chr2 (163-339)||(29303342-29303522)
chr2 (137-286)||(43672737-43672887)
chr2 (257-339)||(45277251-45277333)
chr2 (257-339)||(7880108-7880190)
chr2 (67-159)||(10023326-10023418)
chr2 (253-322)||(25415498-25415567)
chr2 (276-339)||(6883603-6883666)
[»] scaffold0385 (1 HSPs)
scaffold0385 (220-336)||(903-1020)
[»] scaffold0178 (1 HSPs)
scaffold0178 (137-226)||(1015-1104)
[»] scaffold0743 (1 HSPs)
scaffold0743 (261-339)||(2557-2635)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 59 - 341
Target Start/End: Original strand, 25201464 - 25201744
Alignment:
Q  59 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgtta 158  Q
    ||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  25201464 ttattgatataagttatcaagtgtgctaaaattcat---agaaagtacacttttaacaacagtctaatattgattttttatcatcataatggacttgtta 25201560  T
Q  159 gaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 257  Q
    ||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  25201561 gaaatacttatggtatataaagagaggaatgatgtacttcttacatacaaaggagttcttgcatttatgatttctctaaaaagtctaacactaattttgt 25201660  T
Q  258 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgatgt 341  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25201661 atcaaatattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgatgt 25201744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 137 - 339
Target Start/End: Original strand, 13957478 - 13957681
Alignment:
Q  137 tatcatcataatgaacttgttagaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 236  Q
    ||||||||||||||||||||||||  ||||||| | ||||||| ||||||||||||||||||||| ||||||| || |||||| ||||||||||| ||||    
T  13957478 tatcatcataatgaacttgttagagatacttatagcatataaaaagaggaatgatgtacttctagtatacaaatgacttcttgtatctatgatttatcta 13957577  T
Q  237 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 335  Q
    |||| |||||| |||| ||||||||| |||||||  |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| |||||||     
T  13957578 aaaactctaacactaattttgtatcatgtattatcattgttatgagtttaacattgaagaattttgcatccaaaagtttaaaatttagttaattacgtgt 13957677  T
Q  336 tgat 339  Q
    ||||    
T  13957678 tgat 13957681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 62 - 331
Target Start/End: Original strand, 51758632 - 51758901
Alignment:
Q  62 ttgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgttagaa 161  Q
    ||||| |||||||||||||||||||||||||| ||| ||| |||||| |||||| |  |||||  ||||||||| ||||||| |||| ||||||||| |     
T  51758632 ttgatgtaagttattaagtgtgctaaaattcaccattgaaggtacacctttaacta--gtctaacattaattttgtatcatcgtaataaacttgttaaag 51758729  T
Q  162 ttacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatc 260  Q
     |||||||   ||||||| || ||||||||||||||| |||| ||||||||||||||| ||||  |||| |||||||||||||||| |||| ||||||||    
T  51758730 atacttatatcatataaaaagcggaatgatgtacttcaagcaaacaaaggagttcttgtatcttagattactctaaaaagtctaacactaattttgtatc 51758829  T
Q  261 aagtattattgttgttatgag-tttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 331  Q
    | ||||||||||||||||||| ||||||||||  || ||||  ||| ||||||||||| |||||||| ||||    
T  51758830 atgtattattgttgttatgagttttaacattgccgacttttccatccaaaagtttaaattttaattaattac 51758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 137 - 339
Target Start/End: Complemental strand, 42511586 - 42511386
Alignment:
Q  137 tatcatcataatgaacttgttagaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 236  Q
    |||||| |||||||||||||||||  ||||| |   ||||||| ||||||||||||||||||||| ||||||| |||||||||  |||||||||  ||||    
T  42511586 tatcattataatgaacttgttagagatacttctaacatataaaaagaggaatgatgtacttctagtatacaaaagagttcttgtgtctatgattcttcta 42511487  T
Q  237 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 335  Q
    |||||  |||| |||| ||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||| ||| |||||||     
T  42511486 aaaag--taacactaattttgtatcatgtattattgttgttatgagtttaacattggagaa-tttgcatctaagagtttaaaatttagttaattacgtgc 42511390  T
Q  336 tgat 339  Q
    ||||    
T  42511389 tgat 42511386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 174 - 339
Target Start/End: Original strand, 10142410 - 10142576
Alignment:
Q  174 tataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgt 272  Q
    |||||| |||||||| |||||| ||||| |||||||||||||| || |||||||||| || ||||||||||||| ||||||| |||||| ||||||||||    
T  10142410 tataaaaagaggaatcatgtacatctagtatacaaaggagttcatgtatctatgattcctttaaaaagtctaacactaattttgtatcatgtattattgt 10142509  T
Q  273 tgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||| |||||||||||| ||||||||| ||  |||||||||||||||| ||| ||||||| ||||    
T  10142510 tgttattagtttaacattggagaattttgcattcaaaagtttaaaatttagttaattacgtgttgat 10142576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 14192147 - 14192065
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  14192147 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 14192065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 339
Target Start/End: Original strand, 51337817 - 51337997
Alignment:
Q  163 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 258  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  51337817 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 51337916  T
Q  259 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  51337917 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 51337997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 339
Target Start/End: Complemental strand, 28143333 - 28143196
Alignment:
Q  205 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 301  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  28143333 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 28143234  T
Q  302 tatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||| ||| || ||||||||||||  ||||||| ||||    
T  28143233 tatccaaatgtctaaaatttaattgattacgtgttgat 28143196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 298
Target Start/End: Complemental strand, 20152231 - 20151992
Alignment:
Q  60 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgttag 159  Q
    ||||||||||||| | |||||||||| |||||| |||| | |   | ||| ||||||||| ||||  | | || || ||| |||| ||| |||||| |||    
T  20152231 tattgatataagtgagtaagtgtgcttaaattcctcattggagacatactattaacaacattctaacactcatattatataatcaaaataaacttgatag 20152132  T
Q  160 aattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac-tctaatttgta 258  Q
    |  ||||| |   ||||||| ||| ||||||| ||||| || | || |||||||||||||||| | | ||| ||||||||||| |||| |    ||||||    
T  20152131 agatacttgtaacatataaaaagatgaatgatatacttgtaacttataaaggagttcttgcattttttattcctctaaaaagtttaacattggttttgta 20152032  T
Q  259 tcaagtattattgttgttatgagtttaacattgaagaatt 298  Q
    |||| |||| ||||||||||| |||||| |||| ||||||    
T  20152031 tcaactattgttgttgttatgggtttaatattggagaatt 20151992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 59 - 339
Target Start/End: Complemental strand, 39038589 - 39038311
Alignment:
Q  59 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgtta 158  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| || |  ||| ||||| |||||||||||| |||||||||    
T  39038589 ttattgatataaattattaagtgtgctaaaattcatcattgaaggtacacttttaacaacaatccaacattgattttgtatcatcataataaacttgtta 39038490  T
Q  159 gaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 257  Q
    ||  |||||||   ||||||| ||||||||||||||||||||||||||||||||||| ||  || || |||| |||||||||||||||| |||| |||||    
T  39038489 gagatacttataacatataaaaagaggaatgatgtacttctagcatacaaaggagtttttctatatacgattcctctaaaaagtctaacactaattttgt 39038390  T
Q  258 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||| |||||||||||||||||||||||||||||  ||  |||  ||| |||||||||||||||||||| ||||||| ||||    
T  39038389 atcatgtattattgttgttatgagtttaacattg-gga--tttccatccaaaagtttaaaatttaattaattacgtgttgat 39038311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 60 - 339
Target Start/End: Complemental strand, 43178923 - 43178647
Alignment:
Q  60 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgttag 159  Q
    |||||||||||||||||||||||| ||||||| | ||| ||| |||||| |||||||| ||||||  ||| ||||| ||||||||||||||| ||| |||    
T  43178923 tattgatataagttattaagtgtgttaaaattaaccattgaaggtacacatttaacaatagtctaacattgattttgtatcatcataatgaatttggtag 43178824  T
Q  160 aattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgta 258  Q
    |  |||||||   ||||||| |||| |||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||| |||| ||||||    
T  43178823 agatacttatatcatataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgta 43178724  T
Q  259 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    | | ||||||   |||||||||||||||||||| ||| |||| |||| |||||||||||||||||||| ||||||| ||||    
T  43178723 t-atgtatta---ttgttatgagtttaacattggagatttttttatccaaaagtttaaaatttaattaattacgtgttgat 43178647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 183 - 339
Target Start/End: Complemental strand, 24441864 - 24441706
Alignment:
Q  183 aggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgag 281  Q
    ||||||||| ||||||||| |||||||||||||||||  ||||||||| ||||||||||| ||||  ||| ||||||||| |||||||||||||| ||||    
T  24441864 aggaatgatatacttctagtatacaaaggagttcttgtgtctatgattcctctaaaaagtttaacaataattttgtatcatgtattattgttgttttgag 24441765  T
Q  282 ttt-aacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||| ||||||||||||||||| ||| |||||||||||||||| ||| ||||||| ||||    
T  24441764 tttaaacattgaagaattttgcatccaaaagtttaaaatttatttaattacgtgttgat 24441706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 205 - 339
Target Start/End: Complemental strand, 6195805 - 6195668
Alignment:
Q  205 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 301  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  6195805 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 6195706  T
Q  302 tatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||| ||| |||||||||||||||| ||||||| ||||    
T  6195705 tatccaaatgtttaaaatttaattaattacgtgttgat 6195668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 339
Target Start/End: Complemental strand, 6189332 - 6189152
Alignment:
Q  163 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 258  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  6189332 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 6189233  T
Q  259 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6189232 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtataaaatttaattaattacgtgttgat 6189152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 19311773 - 19311691
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  19311773 tatcaagtattattgttgttatgggtttaacattggagaattttgtatcaaaatgtctaaaatttaattaattacgtgttgat 19311691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 339
Target Start/End: Original strand, 48636868 - 48637048
Alignment:
Q  163 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 258  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  48636868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 48636967  T
Q  259 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  48636968 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 48637048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 8069846 - 8069928
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  8069846 tatcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 8069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 322
Target Start/End: Original strand, 23305504 - 23305648
Alignment:
Q  181 agaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg-tatc--aagtattattgttgtta 277  Q
    |||||||| || ||||||||||||||||| ||||||| | ||||  |||| ||| ||||||||||||  | ||||  ||||  |||||||||||| ||||    
T  23305504 agaggaataatctacttctagcatacaaatgagttctcgtatcttagattcctcaaaaaagtctaaccttgattttctatcgcaagtattattgtagtta 23305603  T
Q  278 tgagtttaacattgaagaattttgtatctaaaagtttaaaattta 322  Q
    || ||||||||||| | ||||||||||| |||||| |||||||||    
T  23305604 tgggtttaacattggataattttgtatccaaaagtctaaaattta 23305648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 8113625 - 8113566
Alignment:
Q  263 gtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 322  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  8113625 gtattattgttgttatgagtttaacattggagaattttgcatccaaaagtttaaaattta 8113566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 163 - 339
Target Start/End: Original strand, 48238625 - 48238804
Alignment:
Q  163 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 258  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  48238625 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 48238724  T
Q  259 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||  ||| || ||||||||||||| ||||||| ||||    
T  48238725 tcaagtattattgttgttatgtgtt-aacattggagaattttgtattcaaatgtctaaaatttaattaattacgtgttgat 48238804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 273
Target Start/End: Complemental strand, 8113778 - 8113640
Alignment:
Q  137 tatcatcataatgaacttgttagaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctct- 235  Q
    ||||||||||||||||||||||||  ||  |||   |||||||   | ||||||||||||||||  ||||||||||  ||||| ||| |||||| ||||     
T  8113778 tatcatcataatgaacttgttagagatatctataacatataaaagtaagaatgatgtacttctactatacaaaggaactcttgtatcgatgattcctcta 8113679  T
Q  236 aaaaagtctaactctaa-tttgtatcaagtattattgtt 273  Q
    |||||||||||| |||| ||||||||| |||||||||||    
T  8113678 aaaaagtctaacactaattttgtatcatgtattattgtt 8113640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 14573995 - 14574068
Alignment:
Q  174 tataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac 247  Q
    |||||| ||| ||||||||||||| || | || |||||||||||||| ||| ||||| |||| |||||||||||    
T  14573995 tataaaaagaagaatgatgtacttgtaacgtataaaggagttcttgcctctttgattcctctgaaaagtctaac 14574068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 60 - 339
Target Start/End: Complemental strand, 11648435 - 11648157
Alignment:
Q  60 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgttag 159  Q
    |||| ||||||||||||||||||||| |||| || ||| |||  ||||| |||||||| ||||||  ||||||||| |||||| ||||||||||||||||    
T  11648435 tattaatataagttattaagtgtgcttaaatacaccattgaagttacacatttaacaatagtctaacattaattttgtatcattataatgaacttgttag 11648336  T
Q  160 aattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgta 258  Q
    |  ||||||| || |||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||| ||||||| |||| ||| |||| ||||||    
T  11648335 agatacttatagtttataaaaagaggaatgatgtatttctagcatacaaaggagttattgtatctatgattcctctaaagagtcaaacactaattttgta 11648236  T
Q  259 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||  | |||||||||||||||||||||||||| || |||||  ||| |||||||||||||||||||| ||| ||| ||||    
T  11648235 tca--tgttattgttgttatgagtttaacattggagtatttttcatccaaaagtttaaaatttaattaattatgtgttgat 11648157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 59 - 339
Target Start/End: Complemental strand, 961008 - 960728
Alignment:
Q  59 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgtta 158  Q
    ||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||| || |  ||||||||| ||||||||||||||||||||||    
T  961008 ttattgatataagttattaagtgtgctaaaattgaccattgaaggcacacttttaacaacaatccaacattaattttgtatcatcataatgaacttgtta 960909  T
Q  159 gaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaag-tctaactctaattt-g 256  Q
    |   |  ||||   ||||||| |||||||||||  |||| ||||||||||| ||||||||| |||||||||| |||||||||  ||||||  |||||| |    
T  960908 gctatgtttataacatataaaaagaggaatgat--acttatagcatacaaatgagttcttgtatctatgattcctctaaaaaaatctaacattaattttg 960811  T
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
     | || ||||| ||||||| ||||||||||||||  ||||||||| ||| ||||||||||| |||||||| ||||||| ||||    
T  960810 caccatgtattcttgttgtgatgagtttaacattagagaattttgcatcaaaaagtttaaattttaattaattacgtgttgat 960728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 35824166 - 35824273
Alignment:
Q  185 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtt 283  Q
    ||||||||||||||| | |||||||||| |||||  |||||||||| ||||||||||| |||| |||| ||||||||| |||||||||||||||||||||    
T  35824166 gaatgatgtacttctggtatacaaaggatttcttttatctatgattcctctaaaaagtttaacactaattttgtatcatgtattattgttgttatgagtt 35824265  T
Q  284 taacattg 291  Q
    ||||||||    
T  35824266 taacattg 35824273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 339
Target Start/End: Complemental strand, 602280 - 602175
Alignment:
Q  235 taaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 333  Q
    ||||||||||||| ||||||| || ||| ||||||||||||||||||||||||||||  ||||||||  ||| |||||||||||||||||||| ||||||    
T  602280 taaaaagtctaacactaattttgtgtcatgtattattgttgttatgagtttaacattttagaattttccatccaaaagtttaaaatttaattaattacgt 602181  T
Q  334 gatgat 339  Q
    | ||||    
T  602180 gttgat 602175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 339
Target Start/End: Complemental strand, 11994623 - 11994463
Alignment:
Q  181 agaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattattgttgttat 278  Q
    ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| |  |  ||| ||||||||||||||||||||||    
T  11994623 agaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattttaacacatttttttttatcaagtattattgttgttat 11994524  T
Q  279 gagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    | ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  11994523 gggtttaacattggagaattttgtatcaaaatgtctaaaatttaattaattacgtgttgat 11994463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 255
Target Start/End: Complemental strand, 9382062 - 9381946
Alignment:
Q  137 tatcatcataatgaacttgttagaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 236  Q
    |||||||||||||||||||||||   ||| | | | ||||||| | | ||||||||||||||||  ||||||| ||||||||| |||||||||| |||||    
T  9382062 tatcatcataatgaacttgttagc--tacctgtagcatataaaaataagaatgatgtacttctaatatacaaaagagttcttgtatctatgattcctcta 9381965  T
Q  237 aaaagtctaactctaattt 255  Q
    ||||||||||| |||||||    
T  9381964 aaaagtctaacactaattt 9381946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 32073462 - 32073545
Alignment:
Q  187 atgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattat 269  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||| ||||||||  |||||||    
T  32073462 atgatgtacttctagcatacaaatgagtttttgtatctatgattcctctaaaaagtctaactctaactttgtatcttgtattat 32073545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 2879039 - 2878957
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  2879039 tatcaagtattattgttgttatgagtttaatattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 2878957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 6927388 - 6927306
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6927388 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 6927306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 28509524 - 28509606
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  28509524 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 28509606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 28516731 - 28516813
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  28516731 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 28516813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 247
Target Start/End: Original strand, 24683070 - 24683231
Alignment:
Q  80 tgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgttagaattacttatggtatataaa 179  Q
    |||||||||||||| ||| | | ||||||  ||||||||||||||  ||| ||||| ||| |||||||| |||||| ||       || | | |||||||    
T  24683070 tgtgctaaaattcaccattggaggtacacagttaacaacagtctaacattgattttgtattatcataataaacttggtat------ttgtagcatataaa 24683163  T
Q  180 gagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac 247  Q
     ||||||||||| ||||| ||||||||||| ||||||||| ||||  |||| ||||||||||||||||    
T  24683164 aagaggaatgatttacttgtagcatacaaatgagttcttgtatcttagattactctaaaaagtctaac 24683231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 59 - 321
Target Start/End: Original strand, 1830844 - 1831104
Alignment:
Q  59 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgtta 158  Q
    |||||||||||||||||||||||| |||||||| | ||| |||||||||| |||||||| ||| ||  ||| ||||| ||||||||||||||||||| ||    
T  1830844 ttattgatataagttattaagtgtcctaaaattaaccattgaaagtacacatttaacaatagtataacattgattttgtatcatcataatgaacttgcta 1830943  T
Q  159 gaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 257  Q
    ||| |||||||   ||||||| ||| |||||||| |||||||||||||||||||| ||||| ||   ||||| |||||||||||||||  |||| |||||    
T  1830944 gaaatacttataacatataaaaagatgaatgatgcacttctagcatacaaaggagctcttgtattattgattactctaaaaagtctaaaactaattttgt 1831043  T
Q  258 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattt 321  Q
    |||| ||||||   ||||||| |||||||||||| ||||||||  ||| |||||||||||||||    
T  1831044 atcatgtatta---ttgttataagtttaacattggagaattttccatccaaaagtttaaaattt 1831104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 137 - 339
Target Start/End: Complemental strand, 11680720 - 11680517
Alignment:
Q  137 tatcatcataatgaacttgttagaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 236  Q
    ||||||||||||||||||||||||  ||||||| | ||||||| |||| |||||||||||||||| |||  | ||||||  |   |||| |||| ||| |    
T  11680720 tatcatcataatgaacttgttagagatacttatagcatataaaaagagtaatgatgtacttctagtatattatggagttactctgtctaagattcctcaa 11680621  T
Q  237 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 335  Q
    |||||||||||  |||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||| ||| |||||||     
T  11680620 aaaagtctaacaataattttgtatcaagtattattgttgttaggagtttaacattggagaattttgcatctaaaactttaaaatttagttaattacgtgt 11680521  T
Q  336 tgat 339  Q
    ||||    
T  11680520 tgat 11680517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 173 - 333
Target Start/End: Original strand, 14677914 - 14678076
Alignment:
Q  173 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattatt 270  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| |||||| |  |  ||| ||||||||||||||    
T  14677914 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattctaacacatttttttttatcaagtattatt 14678013  T
Q  271 gttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 333  Q
    ||||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||    
T  14678014 gttgttatgggtttaacattggagaattttgtatccaaatgtctaaaatttaattaattacgt 14678076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 33516457 - 33516375
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  33516457 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 33516375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 339
Target Start/End: Complemental strand, 4065150 - 4064985
Alignment:
Q  173 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattg 271  Q
    |||||||  |||||||||||| ||| || |||| ||||||||||||| |||| || || |||||||||||  ||| ||  ||| ||||||||||| ||||    
T  4065150 atataaaatgaggaatgatgttcttgtaacatataaaggagttcttgtatctttggttcctctaaaaagt--aacgctggttttgtatcaagtataattg 4065053  T
Q  272 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||| |||| |||||| |||| |||||| || ||| |||||  ||||||||||||| ||| ||| ||||    
T  4065052 ttgctatgggtttaatattggagaattatgcatccaaaaggctaaaatttaattaattaagtgttgat 4064985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 298
Target Start/End: Complemental strand, 14679116 - 14679000
Alignment:
Q  183 aggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgag 281  Q
    |||||||||| |||| || |||| ||| ||| | |||||||| |||||  |||||||| | |||| ||| ||| |||||||||||||||||| | ||| |    
T  14679116 aggaatgatgcacttgtaacatataaatgagattttgcatctctgattcttctaaaaaatttaacactagttttgtatcaagtattattgttatcatgcg 14679017  T
Q  282 tttaacattgaagaatt 298  Q
    ||||| |||||||||||    
T  14679016 tttaatattgaagaatt 14679000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 1831137 - 1831190
Alignment:
Q  278 tgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 331  Q
    |||||||||||||| ||||||||  ||| ||||||||||||| |||||| ||||    
T  1831137 tgagtttaacattggagaattttcgatccaaaagtttaaaatataattaattac 1831190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 59 - 333
Target Start/End: Complemental strand, 5120856 - 5120580
Alignment:
Q  59 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgtta 158  Q
    |||||||||||| |||| |||||||||||||||||   | ||| ||||||||||||||||||| ||  ||| || || |||||| |||||||||||||||    
T  5120856 ttattgatataaattatcaagtgtgctaaaattcacatttgaaggtacacttttaacaacagtttaacattgatattctatcattataatgaacttgtta 5120757  T
Q  159 gaattacttatggtatataaagagaggaatgatgtacttctagcatacaaagg---agttcttgcatctatgatttctctaaaaagtctaactctaa-tt 254  Q
    ||  |||||||   ||||||| ||||||||| ||||||||||||||||||| |   |||||||| |||||||||| || |||||| |||||| |||| ||    
T  5120756 gagatacttatatcatataaaaagaggaatggtgtacttctagcatacaaatgatcagttcttgtatctatgattcctttaaaaactctaacactaattt 5120657  T
Q  255 tgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 333  Q
    ||||||| |||||||||||||||| ||  |||||||| ||||||||  ||| |||||||||||||||||||| ||||||    
T  5120656 tgtatcatgtattattgttgttataag--taacattggagaatttttcatccaaaagtttaaaatttaattaattacgt 5120580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 137 - 339
Target Start/End: Complemental strand, 43171267 - 43171066
Alignment:
Q  137 tatcatcataatgaacttgttagaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 236  Q
    ||||||||||||||||||  ||||  ||| |||   ||||||| | |||||||||||||||||||  |||||||||||||||| || ||||||| |||||    
T  43171267 tatcatcataatgaactt--tagagatacctataacatataaaaaaaggaatgatgtacttctagtgtacaaaggagttcttgtatttatgattcctcta 43171170  T
Q  237 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 335  Q
     |||||||||| ||||||| |||| | |||||||| |||||| ||||||||||||| ||||||||| ||| |||||||||||||||| ||| |||||||     
T  43171169 caaagtctaacactaattttgtattatgtattatttttgttacgagtttaacattggagaattttgcatccaaaagtttaaaatttagttaattacgtgt 43171070  T
Q  336 tgat 339  Q
    ||||    
T  43171069 tgat 43171066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 59 - 219
Target Start/End: Complemental strand, 23318327 - 23318168
Alignment:
Q  59 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgtta 158  Q
    ||||||||||||||||||||||||| |||| |||| ||| ||| |||||||||||||||||   ||  ||| ||||| ||| ||||||||||||||||||    
T  23318327 ttattgatataagttattaagtgtgataaatttcaccattgaatgtacacttttaacaacaacataacattgattttgtataatcataatgaacttgtta 23318228  T
Q  159 gaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttg 219  Q
     |  ||||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  23318227 aagatacttatagtatataaaaagaggaatgatgtacttctaacatac-aaggagttcttg 23318168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 173 - 326
Target Start/End: Original strand, 26402144 - 26402295
Alignment:
Q  173 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaat-ttgtatcaagtattattg 271  Q
    ||||||| ||| ||||||| ||||||||| ||||||||||||||||| | |||||||||||||||||||| |||| ||||| |||||||| ||||||||     
T  26402144 atataaaaagaagaatgatatacttctagaatacaaaggagttcttgtacctatgatttctctaaaaagtgtaacactaatgttgtatcatgtattatta 26402243  T
Q  272 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 326  Q
     |   |||||||||| |||| ||||||||  ||| ||||||||||||||||||||    
T  26402244 gt---atgagtttaaaattggagaattttccatccaaaagtttaaaatttaatta 26402295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 173 - 339
Target Start/End: Complemental strand, 14651656 - 14651489
Alignment:
Q  173 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc-taatttgtatcaagtattattg 271  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| | |  ||| |||||||||||||||    
T  14651656 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaaatttaacacattttttttatcaagtattattg 14651557  T
Q  272 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||||| |||||| |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  14651556 ttgttatgggtttaaaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 14651489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 339
Target Start/End: Original strand, 7850480 - 7850660
Alignment:
Q  163 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 258  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  7850480 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 7850579  T
Q  259 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  7850580 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 7850660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 38491310 - 38491392
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  38491310 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 38491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 33922322 - 33922260
Alignment:
Q  59 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagt 121  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||    
T  33922322 ttattgacataagtgattaagtgtgctaaaattcatcattgaaggtacacttttaataacagt 33922260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 59 - 219
Target Start/End: Complemental strand, 12783929 - 12783770
Alignment:
Q  59 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgtta 158  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||  ||| ||||| ||||||||||||||||||||||    
T  12783929 ttattgataaaagttattaagtgtgttaaaattcatcattgaaggtacacttttaacaacagtctaacattgattttgtatcatcataatgaacttgtta 12783830  T
Q  159 gaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttg 219  Q
    ||  ||||||| | ||||||| ||||||||||||||||||||| |||| ||||||||||||    
T  12783829 gagatacttatagcatataaaaagaggaatgatgtacttctaggatac-aaggagttcttg 12783770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 73 - 290
Target Start/End: Complemental strand, 47397437 - 47397224
Alignment:
Q  73 tattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgttagaattacttatggt 172  Q
    ||||||||||||||||||| | ||| ||| |||||||||||||||| |||||  ||| ||||| ||||||     |||||||||||||  ||||||| |     
T  47397437 tattaagtgtgctaaaatttaccattgaaggtacacttttaacaaccgtctaacattgattttgtatcat-----tgaacttgttagagatacttatagc 47397343  T
Q  173 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattg 271  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||| || ||||||| ||||||||||| |||  |||| ||||||||| ||||| |||    
T  47397342 atataaagagaggaatgatgtccttctagcatataaaggagttattgtatttatgattcctctaaaaagtgtaaaactaattttgtatcatgtatttttg 47397243  T
Q  272 ttgttatgagtttaacatt 290  Q
    |||||||||||||||||||    
T  47397242 ttgttatgagtttaacatt 47397224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 185 - 333
Target Start/End: Original strand, 12028035 - 12028183
Alignment:
Q  185 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtt 283  Q
    |||||||||| |||| | ||||||||||||||||| |||||||||| |||||||| ||||||| ||||||| |||||| |||||||||||||||||||||    
T  12028035 gaatgatgtatttcttgtatacaaaggagttcttgtatctatgattcctctaaaa-gtctaacactaattttgtatcatgtattattgttgttatgagtt 12028133  T
Q  284 taacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 333  Q
    |||||||| ||||||||| ||| |||||||||||||||| ||| ||||||    
T  12028134 taacattggagaattttgcatccaaaagtttaaaatttagttaattacgt 12028183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 322
Target Start/End: Complemental strand, 5208592 - 5208454
Alignment:
Q  185 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtt 283  Q
    |||||||| |||||||| |||| || ||||||||| ||||||||||||||||||||||||||| |||| |||||||||  ||||| |||||||||| ||     
T  5208592 gaatgatgcacttctagtatacgaatgagttcttgtatctatgatttctctaaaaagtctaacactaattttgtatcatatattactgttgttatgggtc 5208493  T
Q  284 taacattgaagaattttgtatctaaaagtttaaaattta 322  Q
    |||||||| ||||||||| ||| ||||||||||||||||    
T  5208492 taacattgtagaattttgcatccaaaagtttaaaattta 5208454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 221 - 339
Target Start/End: Original strand, 48646236 - 48646355
Alignment:
Q  221 atctatgatttctctaaaaagtctaactctaatttg-tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaat 319  Q
    ||||||| || ||||||||| |||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  48646236 atctatggttcctctaaaaattctaacactaattttatatcatgtattattgttgttatgagtttaacattgaagaattttgcatctaaatgtttaaaat 48646335  T
Q  320 ttaattacttacgtgatgat 339  Q
    ||||||| || |||| ||||    
T  48646336 ttaattaattgcgtgttgat 48646355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 339
Target Start/End: Original strand, 36296868 - 36297048
Alignment:
Q  163 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 258  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  36296868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 36296967  T
Q  259 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  36296968 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 36297048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 339
Target Start/End: Original strand, 42722403 - 42722583
Alignment:
Q  163 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 258  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  42722403 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 42722502  T
Q  259 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  42722503 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 42722583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 205 - 339
Target Start/End: Complemental strand, 28945697 - 28945560
Alignment:
Q  205 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 301  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  28945697 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 28945598  T
Q  302 tatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  28945597 tatccaaatgtctaaaatttaattaattacgtgttgat 28945560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 26221954 - 26222036
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  26221954 tatcaagtattattgtttttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 26222036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 49228473 - 49228403
Alignment:
Q  256 gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 326  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||  |   ||||||||||||| ||||||    
T  49228473 gtatcacgtattattgttgttatgagtttaacattggagaatttttcaatcaaaagtttaaaatgtaatta 49228403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 326
Target Start/End: Complemental strand, 35501460 - 35501355
Alignment:
Q  221 atctatgatttctctaaaaagtctaactctaatttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatt 320  Q
    |||| ||||||||| |||||||||||| |   ||| |||||||||||||  |||||||| ||||||||||| |||||  |||||  |||||  |||||||    
T  35501460 atctttgatttctcgaaaaagtctaacacatttttttatcaagtattataattgttatgggtttaacattggagaatgatgtatacaaaagcctaaaatt 35501361  T
Q  321 taatta 326  Q
    ||||||    
T  35501360 taatta 35501355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 12783675 - 12783628
Alignment:
Q  208 aaggagttcttgcatctatgatttctctaaaaagtctaactctaattt 255  Q
    |||||||||||| |||||||||| |||||||||||||| | |||||||    
T  12783675 aaggagttcttgtatctatgattcctctaaaaagtctaccactaattt 12783628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 137 - 331
Target Start/End: Original strand, 47185206 - 47185401
Alignment:
Q  137 tatcatcataatgaacttgttagaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 236  Q
    |||||||| |||||||||||||||  ||||||| | ||||||| |||| |||||||||||| ||   |||||| ||||||||| |||||||||| |||||    
T  47185206 tatcatcacaatgaacttgttagagatacttatagcatataaaaagagaaatgatgtacttataatgtacaaaagagttcttgtatctatgattcctcta 47185305  T
Q  237 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 331  Q
    ||||||||||| |||| ||||||||| | ||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||| ||| ||||    
T  47185306 aaaagtctaacactaattttgtatcatgaattattgttgttatgagtttaacattggagaattttgcatccaaatgtttaaaatttagttaattac 47185401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 6024587 - 6024505
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  6024587 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 6024505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 339
Target Start/End: Complemental strand, 23044825 - 23044645
Alignment:
Q  163 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 258  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  23044825 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 23044726  T
Q  259 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  23044725 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 23044645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 205 - 339
Target Start/End: Complemental strand, 31884842 - 31884705
Alignment:
Q  205 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 301  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  31884842 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 31884743  T
Q  302 tatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  31884742 tatccaaatgtctaaaatttaattaattacgtgttgat 31884705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 44879476 - 44879529
Alignment:
Q  203 atacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg 256  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  44879476 atacaaaggagttcttgtatctatgattcctctaaaaagtctaacactaatttg 44879529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 44879802 - 44879878
Alignment:
Q  263 gtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||||| ||||||||||||||| |||| ||||||| | ||||| ||| |||||||||| ||| ||||||| ||||    
T  44879802 gtattattattgttatgagtttaatattggagaatttggcatctagaagattaaaatttagttaattacgtgttgat 44879878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 181 - 339
Target Start/End: Original strand, 25621723 - 25621882
Alignment:
Q  181 agaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatg 279  Q
    |||||||||||||||||| || ||||||| ||||| ||| || ||||||| |||||||| ||||||| ||||||| |||||| |||||||||||||||||    
T  25621723 agaggaatgatgtacttccagtatacaaatgagttattgtatttatgattcctctaaaaggtctaacactaattttgtatcatgtattattgttgttatg 25621822  T
Q  280 agtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||||||||| |||||||||  || ||||||||||||||||| || ||||||| ||||    
T  25621823 agtttaacattggagaattttgcttccaaaagtttaaaatttaactaattacgtgttgat 25621882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 137 - 322
Target Start/End: Original strand, 14904265 - 14904451
Alignment:
Q  137 tatcatcataatgaacttgttagaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 236  Q
    ||||||||||||||||||||||||  |||||||   ||||||| |||||| |||| ||||| ||| ||| ||| ||||| |||  |||||||||  ||||    
T  14904265 tatcatcataatgaacttgttagagatacttataacatataaaaagaggagtgatatacttatagtatataaatgagttattgtttctatgattcttcta 14904364  T
Q  237 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 322  Q
    |||| ||||||  ||| ||||||||| ||||||||||||||| ||| ||||||||| | ||||||| ||  ||||||||||||||||    
T  14904365 aaaaatctaacaataattttgtatcatgtattattgttgttaggaggttaacattggataattttgcattcaaaagtttaaaattta 14904451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 6883446 - 6883607
Alignment:
Q  59 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgtta 158  Q
    |||||||||||| |||||||||||||||||     ||| |||   ||| ||||||||||| ||| |  ||| ||||| ||||||||||||||||||||||    
T  6883446 ttattgatataaattattaagtgtgctaaa-----tcaaaga---tacgcttttaacaacggtcgaacattgattttatatcatcataatgaacttgtta 6883537  T
Q  159 gaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatga 228  Q
    ||  ||||| | | ||||||| ||||||||||||||||| ||| ||||||| ||||||||| ||||||||    
T  6883538 gagatacttgtagcatataaaaagaggaatgatgtacttttagtatacaaatgagttcttgtatctatga 6883607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 137 - 326
Target Start/End: Complemental strand, 38422512 - 38422322
Alignment:
Q  137 tatcatcataatgaacttgttagaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 236  Q
    |||||||| |||||||||| ||||  ||||| | | ||||||| ||||||||||||||||| || |||| ||||||||||| | |||| |||||  ||||    
T  38422512 tatcatcacaatgaacttgatagagatacttgtagcatataaaaagaggaatgatgtacttgtaacatataaaggagttctagtatctttgattcttcta 38422413  T
Q  237 aaaagtctaactct-aatttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 326  Q
    ||||||||||| ||   ||||||||||||| |||| |||||||| |||| | |||| |||| | || ||| |||||  |||||||||||||    
T  38422412 aaaagtctaacactggttttgtatcaagtaatattattgttatgggtttgatattggagaagtctgcatccaaaaggctaaaatttaatta 38422322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 339
Target Start/End: Complemental strand, 90248 - 90080
Alignment:
Q  173 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattatt 270  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| |  |  ||| ||||||||||||||    
T  90248 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaaatttaacacatttttttttatcaagtattatt 90149  T
Q  271 gttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||| |||||| |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  90148 gttgttatgggtttaaaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 90080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 25415890 - 25415789
Alignment:
Q  59 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgtta 158  Q
    |||||||||||| || |||||||| |||||||||||| | ||| ||||||||||||||||| ||||  ||| ||||| ||||||||||||||||||||||    
T  25415890 ttattgatataaatttttaagtgtactaaaattcatctttgaaggtacacttttaacaacaatctaacattgattttgtatcatcataatgaacttgtta 25415791  T
Q  159 ga 160  Q
    ||    
T  25415790 ga 25415789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 2565866 - 2565948
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  2565866 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 2565948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 18781006 - 18780924
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  18781006 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 18780924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 205 - 339
Target Start/End: Original strand, 19678245 - 19678382
Alignment:
Q  205 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 301  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  19678245 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 19678344  T
Q  302 tatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  19678345 tatccaaatgtctaaaatttaattaattacgtgttgat 19678382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 6271437 - 6271355
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6271437 tatcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 6271355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 163 - 339
Target Start/End: Original strand, 29303342 - 29303522
Alignment:
Q  163 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 258  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  29303342 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 29303441  T
Q  259 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||||| |||||  |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  29303442 tcaagtattattgttgttatgtgtttagaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 29303522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 137 - 286
Target Start/End: Complemental strand, 43672887 - 43672737
Alignment:
Q  137 tatcatcataatgaacttgttagaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 236  Q
    |||||||| |||||| ||| ||||| |||||   | ||||||| ||||||||||||||||| || |||| |||||||||   | |||| ||||| |||||    
T  43672887 tatcatcacaatgaatttgatagaaatacttgcagcatataaaaagaggaatgatgtacttgtaacatataaaggagttacggtatctttgattcctcta 43672788  T
Q  237 aaaagtctaactct-aatttgtatcaagtattattgttgttatgagtttaa 286  Q
    ||||||||||  || | ||||||||||||||||||| ||||||| ||||||    
T  43672787 aaaagtctaatactgattttgtatcaagtattattgatgttatgggtttaa 43672737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 45277333 - 45277251
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  45277333 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 45277251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 7880190 - 7880108
Alignment:
Q  257 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || |||||||||| || ||||||| ||||    
T  7880190 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaactaattacgtgttgat 7880108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 10023326 - 10023418
Alignment:
Q  67 ataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctagtattaattttttatcatcataatgaacttgttag 159  Q
    ||||||||| ||||||||||||||||  ||| ||| |  ||||||||||| || ||||  ||| ||||| |||||||||||||||||||||||    
T  10023326 ataagttatgaagtgtgctaaaattctccattgaatgcgcacttttaacatcaatctaacattgattttgtatcatcataatgaacttgttag 10023418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 25415567 - 25415498
Alignment:
Q  253 tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 322  Q
    ||||||||| ||||||||||||||||||| ||||||||  ||||||||  ||| |||| |||||||||||    
T  25415567 tttgtatcatgtattattgttgttatgagcttaacattagagaattttccatcaaaaactttaaaattta 25415498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 6883603 - 6883666
Alignment:
Q  276 tatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    |||||||||||||||| |||||||| |||| |||| ||||||||||||||| ||| ||| ||||    
T  6883603 tatgagtttaacattggagaattttctatccaaaaatttaaaatttaattaattatgtgttgat 6883666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 220 - 336
Target Start/End: Original strand, 903 - 1020
Alignment:
Q  220 catctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaa 318  Q
    ||||||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||  |||||||| ||| || ||||||| |    
T  903 catctatgattcctctaaaaagtctaacactaattttgtatcatgtattattgttgttatgagtttaacattggtgaattttgcatccaatagtttaata 1002  T
Q  319 tttaattacttacgtgat 336  Q
    |||| ||| |||| ||||    
T  1003 tttagttaattacatgat 1020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 1104 - 1015
Alignment:
Q  137 tatcatcataatgaacttgttagaattacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctat 226  Q
    ||||||||||||||||||||||||  || |||| | ||||||| ||||||| ||||||||||||| ||||||| ||||||||| ||||||    
T  1104 tatcatcataatgaacttgttagagataattatagcatataaaaagaggaacgatgtacttctagtatacaaaagagttcttgtatctat 1015  T

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Target: scaffold0743 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 2635 - 2557
Alignment:
Q  261 aagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 339  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||| ||| || ||||||||||||| ||| ||| ||||    
T  2635 aagtattattgttgttatgtgtttaacattggataattttgtatccaaatgtctaaaatttaattaattatgtgttgat 2557  T

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