View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_low_17 (Length: 321)
Name: NF5933_low_17
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_low_17 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0200 (1 HSPs) |
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| [»] scaffold0119 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 40 - 321
Target Start/End: Complemental strand, 37214749 - 37214468
Alignment:
| Q |
40 |
atgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagtcatta |
139 |
Q |
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|||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37214749 |
atgaaagactcaagcccgagtaggaatcagctagttcctcctgattggtggtttgaagatgtttcaatccttaggattgatcactttgttagagtcatta |
37214650 |
T |
|
| Q |
140 |
ctgctattaaggtaaaaggcatgagatttgaactgattggtgctggaataatgcattatgcaactaaatggctatcaggactggcggggaacgacactac |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37214649 |
ctgctattaaggtaaaaggcatgagatttgaactgattggtgctggaataatgcattatgcaactaaatggctaccaggactggcggggaacgacactac |
37214550 |
T |
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| Q |
240 |
aatccaaggagaggaaacaagcaacaatagtaatagtagttttagtagcggtgacaacaacagtagctggagaggtggactt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37214549 |
aatccaaggagaggaaacaagcaacaatagtaatagtagttttagtagcggtgacaacaacagtagctggagaggtggactt |
37214468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1884454 - 1884666
Alignment:
| Q |
1 |
tcatcaaaaatttcaagtccaagatggaataataatgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1884454 |
tcatcaaaaatttcaagtccaagatggaataataatgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatg |
1884553 |
T |
|
| Q |
101 |
tttcaatccttcggattgatcactttgttagagtcattactgctattaaggtaaaaggcatgagatttgaactgattggtgctggaataatgcattatgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |||||||||| ||||||||||||||| |
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| T |
1884554 |
tttcaatccttcggattgatcactttgttagagtcattactgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcattatgc |
1884653 |
T |
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| Q |
201 |
aactaaatggcta |
213 |
Q |
| |
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||||||||||||| |
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| T |
1884654 |
aactaaatggcta |
1884666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 1266554 - 1266418
Alignment:
| Q |
35 |
atgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagt |
134 |
Q |
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||||||||||||||| |||| |||| |||||||| |||||| | ||||||| | |||||||||||| |||| ||| |||||| ||||||||| ||||| |
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| T |
1266554 |
atgatatgaaagataaaagttcaagcaggaatcagttagttcattctgattgattgtttgaagatgtgccaattcttaggattggtcactttgtcagagt |
1266455 |
T |
|
| Q |
135 |
cattactgctattaaggtaaaaggcatgagatttgaa |
171 |
Q |
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|||| ||| ||||| ||||| || |||||||||||| |
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| T |
1266454 |
tattattgccattaatgtaaagggaatgagatttgaa |
1266418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 30729310 - 30729416
Alignment:
| Q |
33 |
taatgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttaga |
132 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| |||| ||||||| |||||| ||| | || ||| |||||||||||||||||||| |
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| T |
30729310 |
taatgatatgaaagatacaagtcccagtaggaatgggctagctcctactgattgaatgtttgataatgcgccgattcttaggattgatcactttgttaga |
30729409 |
T |
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| Q |
133 |
gtcatta |
139 |
Q |
| |
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|| |||| |
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| T |
30729410 |
gttatta |
30729416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 20405 - 20541
Alignment:
| Q |
35 |
atgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagt |
134 |
Q |
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||||||||||||||| |||| |||| |||||||| ||||||| | ||||||| | |||||||||||| |||| ||| |||||| ||||||||||||||| |
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| T |
20405 |
atgatatgaaagataaaagttcaagcaggaatcagctagttcattctgattgattgtttgaagatgtgccaattcttaggattggtcactttgttagagt |
20504 |
T |
|
| Q |
135 |
cattactgctattaaggtaaaaggcatgagatttgaa |
171 |
Q |
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|||| ||| ||||| ||||| || |||||||||||| |
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| T |
20505 |
tattattgccattaatgtaaatggaatgagatttgaa |
20541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 45148 - 45284
Alignment:
| Q |
35 |
atgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagt |
134 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||| |||||| | ||||||| | |||||||||||| |||| ||| |||||| ||||||||| ||||| |
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| T |
45148 |
atgatatgaaagataaaagttcaagcaggaatcagttagttcattctgattgattgtttgaagatgtgccaattcttaggattggtcactttgtcagagt |
45247 |
T |
|
| Q |
135 |
cattactgctattaaggtaaaaggcatgagatttgaa |
171 |
Q |
| |
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|||| ||| ||||| ||||| || |||||||||||| |
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| T |
45248 |
tattattgccattaatgtaaagggaatgagatttgaa |
45284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 16140458 - 16140559
Alignment:
| Q |
38 |
atatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagtcat |
137 |
Q |
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|||||||||||||||| || || |||||| |||| |||| |||||||| ||||||||||| | || ||| |||||||||||||||||||||| || |
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| T |
16140458 |
atatgaaagatacaagacctagcaggaatgggctagctccttctgattggatgtttgaagatgcattgattcttgggattgatcactttgttagagttat |
16140557 |
T |
|
| Q |
138 |
ta |
139 |
Q |
| |
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|| |
|
|
| T |
16140558 |
ta |
16140559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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