View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_low_18 (Length: 320)
Name: NF5933_low_18
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 28163979 - 28163820
Alignment:
| Q |
9 |
acatcatcaagatcttgatgggaactttgctccttctaacgaggatgattacatgcatgaaaattccgaggatgcacgagatgttgaaaatggaacggaa |
108 |
Q |
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| T |
28163979 |
acatgatcaagatcttgatgggaactttgctccttctaacgaggatgattacatgcatgaaaattccgaggatgcacgagatgttgaaaatggaatggaa |
28163880 |
T |
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| Q |
109 |
agtgtaggtctacaatttgaaattcaacctcatggccaagagaatcttgacgaagatgac |
168 |
Q |
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| T |
28163879 |
agtgtaggtctacaatttgaaattcaacctcatggccaagagaatcttgacgaagatgac |
28163820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 28163751 - 28163675
Alignment:
| Q |
237 |
taatgacttggaacatgaagtccatcacttgccacatcctgacacagatcaagatgaccatgagattgatgatgatg |
313 |
Q |
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| T |
28163751 |
taatgacttggaacatgaagtccatcacttgccacatcctgacacagatcaagatgaccatgagattgatgatgatg |
28163675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 45771229 - 45771272
Alignment:
| Q |
256 |
gtccatcacttgccacatcctgacacagatcaagatgaccatga |
299 |
Q |
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| T |
45771229 |
gtccatcacttgccacatcctgacacagatcaagatgatcatga |
45771272 |
T |
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