View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_low_2 (Length: 626)
Name: NF5933_low_2
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 11 - 610
Target Start/End: Complemental strand, 41875734 - 41875137
Alignment:
| Q |
11 |
catcatcagaagaaggtataaatatagcaccggtttcttgtcgcaatatattcgcaacttcatctcttgaccgtatgttggcctcagaaaagttaacctt |
110 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41875734 |
catcattagaagaaggtataaatatagcaccggtttcttgtcgtaatatatacgcaacttcatctcttgaccttatgttggcctcagaaaagttaacctt |
41875635 |
T |
|
| Q |
111 |
accatcatacctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagttttgctgccaaagccaat |
210 |
Q |
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| T |
41875634 |
accatcatacctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagttttgctgccaaagccaat |
41875535 |
T |
|
| Q |
211 |
gcagcagcatgatttccactgatttcagagaacaacattagaagagaataaattaactgaatcagatttgaaaaaataacttatgtaattattgcataaa |
310 |
Q |
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| T |
41875534 |
gcagcagcatgatttccactgatttcagagaacaacattagaagagaataaattaactgaatcagatttgaaaaaataacttatgtatttattgcataaa |
41875435 |
T |
|
| Q |
311 |
acaaacctgctgtgtgttataacacctttagaagcatcttcatctgtaagagagaaaacagcattgcaggcacctctaaatttaaaagctccactaacga |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41875434 |
acaaacctgctgtgtgttataacacctttagaagcatcttcatctgtgagagagaaaacagcattgcaggcacctctaaatttaaaagctccgctaacga |
41875335 |
T |
|
| Q |
411 |
catagaatacagaagaaaatattatatagtcatttcttctttannnnnnnnnnnnncaagagtataacagtagatagagtaaaccagataactc-aaaaa |
509 |
Q |
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| T |
41875334 |
catagaatacagaagaaaatattatatagtcatttcttcttta---ttatttttttcaagagtataacagtagatagagtaaaccagataactcaaaaaa |
41875238 |
T |
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| Q |
510 |
attagtgaggaaaaatccaaatattaatgaattcataaaaaattcatctctcacctcttttgaaaattttcacacttaaaatatagttgtcttcttgata |
609 |
Q |
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| T |
41875237 |
attagtggggaaaaatccaaatattaatgaattcataaaaaattcatctctcacctcttttgaaaattttcacacttaaaatatagttttcttcttgata |
41875138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 26 - 405
Target Start/End: Original strand, 40868504 - 40868891
Alignment:
| Q |
26 |
gtataaatatagcaccggtttcttgtcgcaatatattcgcaacttcatctcttgaccgtatgttggcctcagaaaagttaaccttaccatcatacctctt |
125 |
Q |
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||||||| |||||||| |||||||| | || | |||||||| ||| |||||||| || || ||||||||||| || |||||| |||| |||||| ||| |
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| T |
40868504 |
gtataaaaatagcaccagtttcttgccacactttattcgcagtttcctctcttgatcgcatattggcctcagaccagataacctgaccaccataccgctt |
40868603 |
T |
|
| Q |
126 |
aacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagttttgctgccaaagccaatgcagcagcatgattt |
225 |
Q |
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| T |
40868604 |
cacattctcaattttacatgttggcgcatttttaggaataacaatgtatgcagggatcccccgtagttttgctgccagagccaatgcagcagcatggttt |
40868703 |
T |
|
| Q |
226 |
ccactgatttcagagaacaacattagaag-agaataaattaactgaatcagatttgaaaaaataa----cttatgtaat---tattgcataaaacaaacc |
317 |
Q |
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| T |
40868704 |
ccactgatttcagagaacaacgtcagaagaacaataaaattacaaaataagatttgaaaaaataatcagtttctggaattactactgcacataacaaacc |
40868803 |
T |
|
| Q |
318 |
tgctgtgtgttataacacctttagaagcatcttcatctgtaagagagaaaacagcattgcaggcacctctaaatttaaaagctccact |
405 |
Q |
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|||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40868804 |
tgctgtgtgttataacccctttagacgcatcttcatcattgagagagaaaacagcattgcatgcacctctaaatttaaaagctccact |
40868891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 309 - 453
Target Start/End: Original strand, 24818262 - 24818407
Alignment:
| Q |
309 |
aaacaaacctgctgtgtgttataacacctttagaagcatcttcatctgtaagagagaaaacagcattgcaggcacctctaaatttaaaagctccactaa- |
407 |
Q |
| |
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||||| ||||||||||||| | || ||||||||||| |||||||| || ||||||| |||||| ||||| ||||| ||||||||||||||||| |||| |
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| T |
24818262 |
aaacacacctgctgtgtgtagttactcctttagaagcctcttcatcggtcagagagagaacagcgttgcatgcacccctaaatttaaaagctccgctaat |
24818361 |
T |
|
| Q |
408 |
cgacatagaatacagaagaaaatattatatagtcatttcttcttta |
453 |
Q |
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| ||||||||||| ||| |||||||||||| | ||||||||||| |
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| T |
24818362 |
ggtcatagaatacaaaaggaaatattatatattattttcttcttta |
24818407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 24817970 - 24818185
Alignment:
| Q |
19 |
gaagaaggtataaatatagcaccggtttcttgtcgcaatatattcgcaacttcatctcttgaccgtatgttggcctcagaaaagttaaccttaccatcat |
118 |
Q |
| |
|
|||||||||||| | ||||||| |||||||| | || | | ||| |||||| ||||||||| | || || |||||| || ||||| || ||||| | |
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| T |
24817970 |
gaagaaggtatatagatagcacttgtttcttgcctcactttgttcataacttcttctcttgactgcatattatcctcagccaaattaacgtttccatcgt |
24818069 |
T |
|
| Q |
119 |
acctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagttttgctgccaaagccaatgcagcagc |
218 |
Q |
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||||||||| ||| |||| ||||||| ||| || |||| ||| |||| |||||||||| ||||||| ||||||||||||| ||||||||||| |
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| T |
24818070 |
acctcttaatattttcaactttacaagatggtgcacttttcggaaccacaataaatgcagggatcccccttatctttgctgccaaagataatgcagcagc |
24818169 |
T |
|
| Q |
219 |
atgatttccactgatt |
234 |
Q |
| |
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||| || ||||||||| |
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| T |
24818170 |
atggttcccactgatt |
24818185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 603
Target Start/End: Original strand, 24818474 - 24818518
Alignment:
| Q |
559 |
ctcacctcttttgaaaattttcacacttaaaatatagttgtcttc |
603 |
Q |
| |
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||||||| ||||| ||||||||||||||||||||||||| ||||| |
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| T |
24818474 |
ctcaccttttttggaaattttcacacttaaaatatagttttcttc |
24818518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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