View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_low_20 (Length: 298)
Name: NF5933_low_20
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 281
Target Start/End: Original strand, 37629330 - 37629605
Alignment:
| Q |
6 |
gaaggaatttgctttgaagctagagacacttgcagaggagctactagacttattatgtgaaaatcttggactagaaaaggggtacctaaaaaaggctttg |
105 |
Q |
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| T |
37629330 |
gaaggaatttgctttgaagctagagacacttgcagaggagctactagacttattatgtgaaaatcttggactagaaaaggggtacctaaaaaaggctttg |
37629429 |
T |
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| Q |
106 |
tatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctccgtgcacacaccgatgccg |
205 |
Q |
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| T |
37629430 |
tatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctccgtgcacacaccgatgccg |
37629529 |
T |
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| Q |
206 |
gtggaatcatccttcttttccaagatgacatggtcagtggccttcagcttctcaaagatggtaactgggtagatgt |
281 |
Q |
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| T |
37629530 |
gtggaatcatccttcttttccaagatgacaaggtcagtggccttcagcttctcaaagatggtaactgggtagatgt |
37629605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 266
Target Start/End: Complemental strand, 36872217 - 36871957
Alignment:
| Q |
6 |
gaaggaatttgctttgaagctagagacacttgcagaggagctactagacttattatgtgaaaatcttggactagaaaaggggtacctaaaaaaggctttg |
105 |
Q |
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| T |
36872217 |
gaaggaattttctctgaggttagagaaactagcagaagagcttttggatttgttatgtgagaatcttggactagagaaaggttaccttaaaaaggcattt |
36872118 |
T |
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| Q |
106 |
tatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctccgtgcacacaccgatgccg |
205 |
Q |
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| T |
36872117 |
tatggatcaagaggaccaacttttggcaccaaagtagccaactaccctcaatgcccaaatccagagctggtgaagggtcttcgtgctcacaccgatgccg |
36872018 |
T |
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| Q |
206 |
gtggaatcatccttcttttccaagatgacatggtcagtggccttcagcttctcaaagatgg |
266 |
Q |
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| T |
36872017 |
gaggaatcatccttctcttccaggatgataaggtcagtggcctacaattgctcaaagatgg |
36871957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 265
Target Start/End: Original strand, 8926808 - 8927045
Alignment:
| Q |
28 |
gagacacttgcagaggagctactagacttattatgtgaaaatcttggactagaaaaggggtacctaaaaaaggctttgtatggatcaaagggaccaactt |
127 |
Q |
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| T |
8926808 |
gagaaactggcagaggaacttcttgacttattgtgtgagaatcttggacttgagaaagggtacttgaagaaagtgttttatggatcaaagggtccaaatt |
8926907 |
T |
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| Q |
128 |
ttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctccgtgcacacaccgatgccggtggaatcatccttcttttcca |
227 |
Q |
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|||| || || ||| ||||||||||| || || || || || || | ||||| || | |||||||| ||||| ||||| ||||||||||| ||||| |
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| T |
8926908 |
ttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcacacacagatgctggtggcatcatccttctcttcca |
8927007 |
T |
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| Q |
228 |
agatgacatggtcagtggccttcagcttctcaaagatg |
265 |
Q |
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| T |
8927008 |
agatgacaaagtcagtggacttcagcttctcaaagatg |
8927045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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