View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5933_low_21 (Length: 289)

Name: NF5933_low_21
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5933_low_21
NF5933_low_21
[»] chr7 (4 HSPs)
chr7 (77-284)||(26476958-26477164)
chr7 (77-284)||(26553398-26553604)
chr7 (14-49)||(13744084-13744119)
chr7 (15-49)||(13007812-13007846)
[»] scaffold0006 (1 HSPs)
scaffold0006 (14-50)||(50557-50593)
[»] scaffold2054 (1 HSPs)
scaffold2054 (14-49)||(1093-1128)
[»] scaffold1913 (1 HSPs)
scaffold1913 (14-49)||(1197-1232)
[»] scaffold0924 (1 HSPs)
scaffold0924 (14-49)||(406-441)
[»] scaffold0117 (2 HSPs)
scaffold0117 (14-49)||(1541-1576)
scaffold0117 (14-49)||(8218-8253)
[»] scaffold0029 (1 HSPs)
scaffold0029 (14-49)||(117159-117194)
[»] chr8 (1 HSPs)
chr8 (14-49)||(23866992-23867027)
[»] chr3 (1 HSPs)
chr3 (15-50)||(41454737-41454772)
[»] chr2 (1 HSPs)
chr2 (14-49)||(20317205-20317240)
[»] chr6 (2 HSPs)
chr6 (15-49)||(29613784-29613818)
chr6 (17-49)||(19287654-19287686)
[»] chr5 (1 HSPs)
chr5 (17-50)||(23529023-23529056)
[»] scaffold0011 (1 HSPs)
scaffold0011 (14-50)||(200-236)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 77 - 284
Target Start/End: Original strand, 26476958 - 26477164
Alignment:
Q  77 acaaaggacgtaaccatgaaggttcacatccaaaaatgacaatacctcgaaagcacgatgttgtagaggtcggaacattagagccggaaggagggacata 176  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  26476958 acaaaggatgtaaccatgagggttcacatccaaaaatgacaatacctcaaaagcacggtgttgtagaggtcggaacattagagctggaaggagggacata 26477057  T
Q  177 agctacatgacctttaatcccttaacctggattgggggctaccatttggattcactaaaatagttccacaatacattcaaatgtataaggagatatgttt 276  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  26477058 agctacaagacctttaatcccttaacctggatt-ggggctaccatttggattcactaaaatagttccacaatactttcaaatgtataaggagacatgttt 26477156  T
Q  277 taaaaagt 284  Q
    ||||||||    
T  26477157 taaaaagt 26477164  T

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Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 77 - 284
Target Start/End: Original strand, 26553398 - 26553604
Alignment:
Q  77 acaaaggacgtaaccatgaaggttcacatccaaaaatgacaatacctcgaaagcacgatgttgtagaggtcggaacattagagccggaaggagggacata 176  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  26553398 acaaaggatgtaaccatgagggttcacatccaaaaatgacaatacctcaaaagcacggtgttgtagaggtcggaacattagagctggaaggagggacata 26553497  T
Q  177 agctacatgacctttaatcccttaacctggattgggggctaccatttggattcactaaaatagttccacaatacattcaaatgtataaggagatatgttt 276  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  26553498 agctacaagacctttaatcccttaacctggatt-ggggctaccatttggattcactaaaatagttccacaatactttcaaatgtataaggagacatgttt 26553596  T
Q  277 taaaaagt 284  Q
    ||||||||    
T  26553597 taaaaagt 26553604  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 13744084 - 13744119
Alignment:
Q  14 atcaaaataaaataaaataataactagggtgttaca 49  Q
    ||||||||||||||||||||||||||||| ||||||    
T  13744084 atcaaaataaaataaaataataactagggcgttaca 13744119  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 13007812 - 13007846
Alignment:
Q  15 tcaaaataaaataaaataataactagggtgttaca 49  Q
    |||||||||||||||||||||||||||| ||||||    
T  13007812 tcaaaataaaataaaataataactagggcgttaca 13007846  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 50557 - 50593
Alignment:
Q  14 atcaaaataaaataaaataataactagggtgttacat 50  Q
    ||||||||||||||||||||||||||||| |||||||    
T  50557 atcaaaataaaataaaataataactagggcgttacat 50593  T

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Target: scaffold2054 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 1093 - 1128
Alignment:
Q  14 atcaaaataaaataaaataataactagggtgttaca 49  Q
    ||||||||||||||||||||||||||||| ||||||    
T  1093 atcaaaataaaataaaataataactagggcgttaca 1128  T

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Target: scaffold1913 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1913
Description:

Target: scaffold1913; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 1197 - 1232
Alignment:
Q  14 atcaaaataaaataaaataataactagggtgttaca 49  Q
    |||||||||||||||||||| |||||||||||||||    
T  1197 atcaaaataaaataaaataacaactagggtgttaca 1232  T

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Target: scaffold0924 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 441 - 406
Alignment:
Q  14 atcaaaataaaataaaataataactagggtgttaca 49  Q
    ||||||||||||||||||||||||||||| ||||||    
T  441 atcaaaataaaataaaataataactagggcgttaca 406  T

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Target: scaffold0117 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 1576 - 1541
Alignment:
Q  14 atcaaaataaaataaaataataactagggtgttaca 49  Q
    ||||||||||||||||||||||||||||| ||||||    
T  1576 atcaaaataaaataaaataataactagggcgttaca 1541  T

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Target: scaffold0117; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 8253 - 8218
Alignment:
Q  14 atcaaaataaaataaaataataactagggtgttaca 49  Q
    ||||||||||||||||||||||||||||| ||||||    
T  8253 atcaaaataaaataaaataataactagggcgttaca 8218  T

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Target: scaffold0029 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 117159 - 117194
Alignment:
Q  14 atcaaaataaaataaaataataactagggtgttaca 49  Q
    ||||||||||||||||||||||||||||| ||||||    
T  117159 atcaaaataaaataaaataataactagggcgttaca 117194  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 23866992 - 23867027
Alignment:
Q  14 atcaaaataaaataaaataataactagggtgttaca 49  Q
    ||||||||||||||||||||| ||||||||||||||    
T  23866992 atcaaaataaaataaaataatgactagggtgttaca 23867027  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 41454772 - 41454737
Alignment:
Q  15 tcaaaataaaataaaataataactagggtgttacat 50  Q
    |||||||||||||||||||||||||||| |||||||    
T  41454772 tcaaaataaaataaaataataactagggcgttacat 41454737  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 20317205 - 20317240
Alignment:
Q  14 atcaaaataaaataaaataataactagggtgttaca 49  Q
    ||||||||||||||||||||||||||||| ||||||    
T  20317205 atcaaaataaaataaaataataactagggcgttaca 20317240  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 29613818 - 29613784
Alignment:
Q  15 tcaaaataaaataaaataataactagggtgttaca 49  Q
    |||||||||||||||||||||||||||| ||||||    
T  29613818 tcaaaataaaataaaataataactagggcgttaca 29613784  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 19287654 - 19287686
Alignment:
Q  17 aaaataaaataaaataataactagggtgttaca 49  Q
    |||||||||||||||||||||||||| ||||||    
T  19287654 aaaataaaataaaataataactagggcgttaca 19287686  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 23529023 - 23529056
Alignment:
Q  17 aaaataaaataaaataataactagggtgttacat 50  Q
    |||||||||||||||||||||||||| |||||||    
T  23529023 aaaataaaataaaataataactagggcgttacat 23529056  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 200 - 236
Alignment:
Q  14 atcaaaataaaataaaataataactagggtgttacat 50  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  200 atcaaaataaaataaaataatgactagggcgttacat 236  T

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