View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_low_22 (Length: 286)
Name: NF5933_low_22
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_low_22 |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 37665245 - 37665501
Alignment:
| Q |
14 |
atggaccatggaagaaatgataggatattatttgccataggacaatcacgaggagtatgcatatcactttatgtaggtccaccacatctatgacaagtat |
113 |
Q |
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| T |
37665245 |
atggaccatggaagaaatgataggatattatttgccataggacaatcacgaggagcatgcatatcactttatgtagatccacaacatctatgacaagtat |
37665344 |
T |
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| Q |
114 |
aagaggtaagatgtcttgaaccgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcct |
213 |
Q |
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| T |
37665345 |
aagaggtaagatgtcctgaaccgcgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcct |
37665444 |
T |
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| Q |
214 |
ccaagtctacctccaacaaataactggctctatttgttgagtcgttagattcgatct |
270 |
Q |
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| T |
37665445 |
ccaagtctacctccaacaaataactggctctatttgttgagtcgttagattcgatct |
37665501 |
T |
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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 255
Target Start/End: Original strand, 1259955 - 1260169
Alignment:
| Q |
44 |
tttgccataggacaatcacgaggagtatgcatatcactttatgtaggtccaccacatctatgacaag---tataagaggtaagatgtcttgaaccgtgaa |
140 |
Q |
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| T |
1259955 |
tttgccataggacagtcacgaagagtatgtatatcactttcaacaaatgcaccacatctttgacaagatgtatcagaggtaagatgtcgtgaaccacgaa |
1260054 |
T |
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| Q |
141 |
agacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctccaagtctacctccaacaaataactgg |
240 |
Q |
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| T |
1260055 |
aggcattgatagggaggctagcatgcatcaccagccaacaaaaatgtcttagattttcagaaacttgaagcctccagatccaactccaacaattaactag |
1260154 |
T |
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| Q |
241 |
ctctatttgttgagt |
255 |
Q |
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| T |
1260155 |
ctctacttgttgagt |
1260169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 38 - 255
Target Start/End: Complemental strand, 33509316 - 33509096
Alignment:
| Q |
38 |
atattatttgccataggacaatcacgaggagtatgcatatcactttatgtaggtccaccacatctatgacaag---tataagaggtaagatgtcttgaac |
134 |
Q |
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| T |
33509316 |
atattctttgccatatgacaatcacgaagagtatgtatatcgctttcaacaaatgcaccacatctttgacaagaagtatcagaggtaagatgtcgtgaac |
33509217 |
T |
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| Q |
135 |
cgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctccaagtctacctccaacaaat |
234 |
Q |
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| T |
33509216 |
cacgaaaggcattggtagggaggctagcatgcatcaccagccaacaaaaatgtctaagattttcataaaccagaagcctctagatccaactccaacaatt |
33509117 |
T |
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| Q |
235 |
aactggctctatttgttgagt |
255 |
Q |
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| T |
33509116 |
aactggctctacttgttgagt |
33509096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 8705 - 8905
Alignment:
| Q |
41 |
ttatttgccataggacaatcacgaggagtatgcatatcactttatgtaggtccaccacatctatgacaa---gtataagaggtaagatgtcttgaaccgt |
137 |
Q |
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| T |
8705 |
ttattttccataggacagtcacgaagactatgtatatcactttcaacaaatgcaccacatctttgacaaaatgtatcagaggtaagatgtcgtgaaccac |
8804 |
T |
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| Q |
138 |
gaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctccaagtctacctccaacaaataac |
237 |
Q |
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| T |
8805 |
gaaaggcattggtagggaggccatcatgcatcaccaaccaacaaaaatgtcttagattttcagaaactggaagcctccaaatccaactccaacaattaac |
8904 |
T |
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| Q |
238 |
t |
238 |
Q |
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| T |
8905 |
t |
8905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 44922605 - 44922511
Alignment:
| Q |
38 |
atattatttgccataggacaatcacgaggagtatgcatatcactttatgtaggtccaccacatctatgacaag---tataagaggtaagatgtct |
129 |
Q |
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| T |
44922605 |
atattctttgtcataggacaatcacgaagagtatgcatatcactttcaacagattcaccacatctatgacaagaaatattagaggtaagatgtct |
44922511 |
T |
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Back To:
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 40699163 - 40699303
Alignment:
| Q |
115 |
agaggtaagatgtcttgaaccgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctc |
214 |
Q |
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|||||||||||||| |||||| |||| ||||||||||||||||| |||||||| | | ||||||||| | |||||||||||||| | |||||| |
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| T |
40699163 |
agaggtaagatgtcgtgaaccaccaaaggcattggtagggaggctatcatgcatcttcatccaacaaaaatgccatagattttcagaaacttgaagcctc |
40699262 |
T |
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| Q |
215 |
caagtctacctccaacaaataactggctctatttgttgagt |
255 |
Q |
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| T |
40699263 |
caggtccaactccaacaattaattagctctacttgttgagt |
40699303 |
T |
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