View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5933_low_24 (Length: 260)

Name: NF5933_low_24
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5933_low_24
NF5933_low_24
[»] chr2 (2 HSPs)
chr2 (21-254)||(26661413-26661646)
chr2 (29-159)||(6049912-6050043)
[»] chr6 (2 HSPs)
chr6 (21-254)||(21481331-21481564)
chr6 (21-157)||(19701161-19701298)
[»] chr7 (3 HSPs)
chr7 (35-233)||(13331531-13331727)
chr7 (35-233)||(13342446-13342642)
chr7 (29-159)||(33430223-33430355)
[»] chr5 (1 HSPs)
chr5 (35-233)||(5672002-5672198)
[»] chr8 (2 HSPs)
chr8 (21-188)||(32717808-32717975)
chr8 (21-188)||(10637619-10637786)
[»] chr3 (1 HSPs)
chr3 (35-216)||(15761973-15762154)
[»] chr1 (2 HSPs)
chr1 (21-188)||(22893774-22893941)
chr1 (29-159)||(44306129-44306259)
[»] scaffold0586 (1 HSPs)
scaffold0586 (21-157)||(9594-9731)
[»] chr4 (1 HSPs)
chr4 (29-142)||(13893697-13893810)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 26661646 - 26661413
Alignment:
Q  21 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26661646 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa 26661547  T
Q  121 ttggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26661546 ttggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcg 26661447  T
Q  221 agaatggcaagggtaggagaggtatattcttgga 254  Q
     ||||||||||||||| |||||||| || |||||    
T  26661446 ggaatggcaagggtagaagaggtattttgttgga 26661413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 6050043 - 6049912
Alignment:
Q  29 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaag 128  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||||||||||||| |||||||||||||| | |||| || | |||||    
T  6050043 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 6049944  T
Q  129 cagttgatgcaca-cacaaagatcatgggttt 159  Q
    ||||||||| ||| ||||||||| ||||||||    
T  6049943 cagttgatgaacaccacaaagatgatgggttt 6049912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 21481564 - 21481331
Alignment:
Q  21 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  21481564 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaa 21481465  T
Q  121 ttggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcg 220  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  21481464 ttggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagca 21481365  T
Q  221 agaatggcaagggtaggagaggtatattcttgga 254  Q
     ||||||||||||||| |||||||| || |||||    
T  21481364 ggaatggcaagggtagaagaggtattttgttgga 21481331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 19701298 - 19701161
Alignment:
Q  21 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 120  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||| ||||||||| ||||| |||    
T  19701298 cagagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaa 19701199  T
Q  121 ttggcaagcagttgatgcacac-acaaagatcatgggt 157  Q
     | |||||||||||||| |||| |||||||||||||||    
T  19701198 atagcaagcagttgatgaacactacaaagatcatgggt 19701161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 35 - 233
Target Start/End: Original strand, 13331531 - 13331727
Alignment:
Q  35 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttg 134  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||    
T  13331531 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13331630  T
Q  135 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcgagaatggcaaggg 233  Q
    ||| ||||||||||||||||||||   ||||||| |||| | ||||||||||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  13331631 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatggcaaggg 13331727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 233
Target Start/End: Original strand, 13342446 - 13342642
Alignment:
Q  35 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttg 134  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||    
T  13342446 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13342545  T
Q  135 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcgagaatggcaaggg 233  Q
    ||| ||||||||||||||||||||   ||||||| |||| | ||||||||||||||||||| |||||||||||  ||||||||||| ||||| ||||||    
T  13342546 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatgacaaggg 13342642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 33430223 - 33430355
Alignment:
Q  29 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaa-ttagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaa 127  Q
    |||| ||||||| |||||||| ||||||||||||||  ||||  |  ||| ||||||||||||||||| |||| ||||||||  |||| |||| | ||||    
T  33430223 tgatgtcaatcatcaaatctacgttgagtaatggaacgattaaaaaaaaaattagatggtaccttgaagagaatagtgaaattcaaaatccaaatagcaa 33430322  T
Q  128 gcagttgatgcaca-cacaaagatcatgggttt 159  Q
     || |||||| ||| | |||||||| |||||||    
T  33430323 acacttgatgaacacctcaaagatcgtgggttt 33430355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 233
Target Start/End: Original strand, 5672002 - 5672198
Alignment:
Q  35 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttg 134  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||    
T  5672002 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 5672101  T
Q  135 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcgagaatggcaaggg 233  Q
    ||| ||||||||||||||||||||   ||||||| |||| | ||||||||||||||||||| |||||||||||  ||||||||||| ||||| ||||||    
T  5672102 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatgacaaggg 5672198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 32717808 - 32717975
Alignment:
Q  21 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 120  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  32717808 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 32717907  T
Q  121 ttggcaagcagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 188  Q
       |||||||||||||| |||| |||||||| |||||||||||||| || |||| ||||||||||||||    
T  32717908 acagcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaa 32717975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 10637786 - 10637619
Alignment:
Q  21 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 120  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||    
T  10637786 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaa 10637687  T
Q  121 ttggcaagcagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 188  Q
       |||||||||||||| |||| |||||||| |||||||||||||| || |||| ||||||||||||||    
T  10637686 acagcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaa 10637619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 35 - 216
Target Start/End: Original strand, 15761973 - 15762154
Alignment:
Q  35 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttg 134  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||||||||| ||||| |||| ||||||||||||| || |||| ||||  |||||    
T  15761973 caatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttg 15762072  T
Q  135 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaat 216  Q
    ||| ||| |||||||||||  | |  |||||||| |||| | |||| |||||||||||||||||||||||||||||||||||    
T  15762073 atgaacatacaaagatcatatgatgttttttatatagaagaacatgagtgaaaatgtttagtgggaatcagagaaaaagaat 15762154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 22893941 - 22893774
Alignment:
Q  21 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 120  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||    
T  22893941 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaa 22893842  T
Q  121 ttggcaagcagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 188  Q
       |||||||||||||| |||| |||||||||||||||||| |||| || |||| ||||||||||||||    
T  22893841 acagcaagcagttgatgaacactacaaagatcatgggtttcctttt-tatagaagatcatgggtgaaaa 22893774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 44306259 - 44306129
Alignment:
Q  29 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaag 128  Q
    |||||||||| ||||||||||||||||||||||||||||||   | ||| || |||||||||||||| |||||||||||||| | |||| || | |||||    
T  44306259 tgatatcaatgaccaaatctatgttgagtaatggaagaattgaaaagaattt-gatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 44306161  T
Q  129 cagttgatgcaca-cacaaagatcatgggttt 159  Q
    ||||||||| ||| ||||||||| ||||||||    
T  44306160 cagttgatgaacaccacaaagatgatgggttt 44306129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 9731 - 9594
Alignment:
Q  21 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 120  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  9731 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 9632  T
Q  121 ttggcaagcagttgatgcacac-acaaagatcatgggt 157  Q
        ||||||||||||| |||| |||||||||||||||    
T  9631 acaacaagcagttgatgaacactacaaagatcatgggt 9594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 13893697 - 13893810
Alignment:
Q  29 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaag 128  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||||||||||||| |||||||||||||| | |||| || |  ||||    
T  13893697 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataacaag 13893796  T
Q  129 cagttgatgcacac 142  Q
    ||||||||| ||||    
T  13893797 cagttgatgaacac 13893810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University