View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5933_low_29 (Length: 241)
Name: NF5933_low_29
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 51105509 - 51105288
Alignment:
| Q |
1 |
tcctatggtttgtgttggttagattcattttgcatatgagatgtctatacataattccactacttctcaaaatgtcagcagtttcatcagattgagaatt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51105509 |
tcctatggcttgtgttggttagattcattttgcatatgagatgtctatacataatgccactacttgtcaaaatgtcagcagtttcatcagattgagaatt |
51105410 |
T |
|
| Q |
101 |
catctcaacaacaatccacaacaaaggaggggagaccaatttcaaagtttgtgacaagtgatgcaaataataagcttgatatagatgattgtaagtcggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51105409 |
catctcaacaacaatccacaacaaaggaggggaaaccaatttcaaagtttgtgacaagtgatgcaaataataagcttgatatagatgattgtaagtcggt |
51105310 |
T |
|
| Q |
201 |
gtgacaattatgagaagctttt |
222 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
51105309 |
gtgacaattatgaaaagctttt |
51105288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University