View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5933_low_30 (Length: 237)

Name: NF5933_low_30
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5933_low_30
NF5933_low_30
[»] chr7 (12 HSPs)
chr7 (1-218)||(26477244-26477461)
chr7 (1-218)||(26553684-26553901)
chr7 (1-51)||(31813418-31813468)
chr7 (1-53)||(6847281-6847333)
chr7 (1-52)||(6803456-6803507)
chr7 (1-47)||(21886478-21886524)
chr7 (3-45)||(39960323-39960365)
chr7 (6-51)||(45002083-45002128)
chr7 (1-49)||(2533949-2533997)
chr7 (1-49)||(24353809-24353857)
chr7 (1-53)||(27554580-27554632)
chr7 (1-45)||(35641491-35641535)
[»] chr5 (11 HSPs)
chr5 (1-53)||(32398086-32398138)
chr5 (1-51)||(694213-694263)
chr5 (1-53)||(31691342-31691394)
chr5 (1-49)||(43482855-43482903)
chr5 (1-51)||(71266-71316)
chr5 (1-51)||(14772629-14772679)
chr5 (1-51)||(17967398-17967448)
chr5 (3-53)||(36895042-36895092)
chr5 (1-50)||(4082821-4082870)
chr5 (4-49)||(26045274-26045319)
chr5 (6-54)||(25941757-25941805)
[»] chr1 (9 HSPs)
chr1 (1-53)||(50503188-50503240)
chr1 (1-53)||(34953979-34954031)
chr1 (6-53)||(18607173-18607220)
chr1 (5-56)||(3013612-3013663)
chr1 (1-47)||(1597200-1597246)
chr1 (1-55)||(26344223-26344277)
chr1 (1-53)||(11324516-11324568)
chr1 (1-53)||(11482537-11482589)
chr1 (3-51)||(14365450-14365498)
[»] chr4 (11 HSPs)
chr4 (1-52)||(38539484-38539535)
chr4 (1-51)||(8826872-8826922)
chr4 (1-56)||(26863100-26863155)
chr4 (1-51)||(3094274-3094324)
chr4 (2-44)||(7215564-7215606)
chr4 (1-47)||(7740573-7740619)
chr4 (1-51)||(19597016-19597066)
chr4 (1-63)||(32599475-32599537)
chr4 (2-51)||(48603571-48603620)
chr4 (5-53)||(16203427-16203475)
chr4 (1-52)||(54931824-54931876)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-53)||(89681-89734)
[»] chr8 (6 HSPs)
chr8 (1-54)||(45045460-45045513)
chr8 (1-53)||(3444627-3444679)
chr8 (1-51)||(41753841-41753891)
chr8 (1-51)||(1988926-1988976)
chr8 (1-51)||(10117053-10117103)
chr8 (2-51)||(13496519-13496568)
[»] chr3 (8 HSPs)
chr3 (1-53)||(45736770-45736822)
chr3 (1-51)||(10872755-10872805)
chr3 (1-51)||(29389334-29389384)
chr3 (1-63)||(50466808-50466870)
chr3 (1-54)||(3648782-3648835)
chr3 (1-53)||(18940052-18940104)
chr3 (1-49)||(35987514-35987562)
chr3 (2-50)||(43177096-43177144)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-56)||(88937-88992)
[»] chr2 (7 HSPs)
chr2 (1-53)||(10996251-10996303)
chr2 (5-51)||(44868519-44868565)
chr2 (1-54)||(15900302-15900355)
chr2 (1-53)||(1961314-1961366)
chr2 (1-53)||(11342053-11342105)
chr2 (1-49)||(19951528-19951576)
chr2 (1-53)||(40204445-40204497)
[»] chr6 (7 HSPs)
chr6 (1-51)||(12383672-12383722)
chr6 (2-51)||(8449660-8449709)
chr6 (2-51)||(8458464-8458513)
chr6 (1-54)||(15718476-15718529)
chr6 (1-53)||(8449579-8449631)
chr6 (1-53)||(8458383-8458435)
chr6 (5-53)||(30916959-30917007)
[»] scaffold0009 (1 HSPs)
scaffold0009 (2-47)||(216284-216329)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 26477244 - 26477461
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatcaaataatgtacaaaggtccaaaacggttagtattgagcctagggaat 100  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  26477244 acatcattaattaaataaatcttaaatataaatttttgtttataatagtgatcgaatgatgtacaaaggtccagaacggttaggattgagcctagggaat 26477343  T
Q  101 aagtttgcttgttacaaacgttgtttatctttttctttactcttcattatatgttagctcatttccaccaacaattaattttaatttaacatcgacgtta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26477344 aagtttgcttgttacaaacgttgtttatctttttctttactcttcattatatgttagctcatttccaccaacaattaattttaatttaacatcgacgtta 26477443  T
Q  201 tcttgtggaggttaacaa 218  Q
    ||||||||||||||||||    
T  26477444 tcttgtggaggttaacaa 26477461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 26553684 - 26553901
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatcaaataatgtacaaaggtccaaaacggttagtattgagcctagggaat 100  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  26553684 acatcattaattaaataaatcttaaatataaatttttgtttataatagtgatcgaatgatgtacaaaggtccagaacggttaggattgagcctagggaat 26553783  T
Q  101 aagtttgcttgttacaaacgttgtttatctttttctttactcttcattatatgttagctcatttccaccaacaattaattttaatttaacatcgacgtta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26553784 aagtttgcttgttacaaacgttgtttatctttttctttactcttcattatatgttagctcatttccaccaacaattaattttaatttaacatcgacgtta 26553883  T
Q  201 tcttgtggaggttaacaa 218  Q
    ||||||||||||||||||    
T  26553884 tcttgtggaggttaacaa 26553901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31813468 - 31813418
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||||||||||| ||| | |||| |||||||||||||||||||||||    
T  31813468 acatcattaattgaatgaatctaaaatgtaaatttttgtttataatagtga 31813418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6847333 - 6847281
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||||||||||| | ||||  ||||||||| ||||||||||||||    
T  6847333 acatcattaattgaataaatataaaatgcaaatttttgcttataatagtgatc 6847281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6803456 - 6803507
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgat 52  Q
    ||||||| |||||||| ||||| ||||||  |||||||||||||||||||||    
T  6803456 acatcatcaattgaatgaatttaaaatattgatttttgtttataatagtgat 6803507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21886524 - 21886478
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataata 47  Q
    |||||||||||||||| ||| | ||||||||||||||| ||||||||    
T  21886524 acatcattaattgaatgaatctaaaatataaatttttgcttataata 21886478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 39960323 - 39960365
Alignment:
Q  3 atcattaattgaataaattttaaatataaatttttgtttataa 45  Q
    |||||||||||||| ||||| |||||||||||||| |||||||    
T  39960323 atcattaattgaatgaatttaaaatataaatttttatttataa 39960365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 45002128 - 45002083
Alignment:
Q  6 attaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    ||||||||||| ||||| |||| |||| ||||||||||||||||||    
T  45002128 attaattgaatgaatttaaaatgtaaagttttgtttataatagtga 45002083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2533997 - 2533949
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagt 49  Q
    |||||||  ||||||||||| | ||||||||||||||| ||||||||||    
T  2533997 acatcatctattgaataaatctaaaatataaatttttgcttataatagt 2533949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24353857 - 24353809
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagt 49  Q
    |||||||| ||| ||||||||| |||| | |||||||||||||||||||    
T  24353857 acatcatttattaaataaatttaaaatgtgaatttttgtttataatagt 24353809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27554580 - 27554632
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    ||||||||||||||||  ||||||||  |||||||||| ||||| ||||||||    
T  27554580 acatcattaattgaatgtattttaaaagtaaatttttgcttatattagtgatc 27554632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35641535 - 35641491
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataa 45  Q
    |||||||| ||||||| ||| | ||||||||||||||||||||||    
T  35641535 acatcatttattgaatgaatgtaaaatataaatttttgtttataa 35641491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 32398086 - 32398138
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  32398086 acatcattaattgaatgaatttaaaatatagatttttgtttataatagtgatc 32398138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 694263 - 694213
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||| ||||||||||||||||| |||| || ||||||||||||||||||||    
T  694263 acataattaattgaataaatttaaaatttatatttttgtttataatagtga 694213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31691342 - 31691394
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||||||| ||| | ||||||||||||||  ||||||||||||||    
T  31691342 acatcattaattgaatgaatctcaaatataaatttttacttataatagtgatc 31691394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43482855 - 43482903
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagt 49  Q
    |||||||||| ||||||||| | |||| |||||||||||||||||||||    
T  43482855 acatcattaaatgaataaatataaaatgtaaatttttgtttataatagt 43482903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 71316 - 71266
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||||||||||| ||| | ||||||| ||||||| ||||||||||||    
T  71316 acatcattaattgaatgaatctaaaatatagatttttgcttataatagtga 71266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14772629 - 14772679
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||||||||||| ||| | ||||||||| ||||| ||||||||||||    
T  14772629 acatcattaattgaattaatctaaaatataaagttttgcttataatagtga 14772679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17967398 - 17967448
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||| ||||||| ||| | |||||| |||||||||||||||||||||    
T  17967398 acatcatttattgaatgaatataaaatatcaatttttgtttataatagtga 17967448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 36895092 - 36895042
Alignment:
Q  3 atcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||| ||||||||| |||| || | ||||||||||||||||||||    
T  36895092 atcattaattaaataaatttaaaatgtagaattttgtttataatagtgatc 36895042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4082821 - 4082870
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtg 50  Q
    |||||||| ||||||||||| | |||| | ||||||||||||||||||||    
T  4082821 acatcatttattgaataaatctaaaatgtgaatttttgtttataatagtg 4082870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 26045319 - 26045274
Alignment:
Q  4 tcattaattgaataaattttaaatataaatttttgtttataatagt 49  Q
    ||||||||||||| ||| | ||||||||||||||| ||||||||||    
T  26045319 tcattaattgaatgaatctaaaatataaatttttgcttataatagt 26045274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 25941757 - 25941805
Alignment:
Q  6 attaattgaataaattttaaatataaatttttgtttataatagtgatca 54  Q
    ||||||||||| || || ||||||  |||||||||||||||||||||||    
T  25941757 attaattgaatgaacttaaaatattgatttttgtttataatagtgatca 25941805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 50503240 - 50503188
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||||||||||| | |||||||||||| |||||||||||||||||    
T  50503240 acatcattaattgaataaatctaaaatataaatttgtgtttataatagtgatc 50503188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34953979 - 34954031
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||||||| ||| | ||||||||||||||| ||||||||||||||    
T  34953979 acatcattaattgaatgaatctaaaatataaatttttgcttataatagtgatc 34954031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 18607173 - 18607220
Alignment:
Q  6 attaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  18607173 attaattgaatgaatttaaaatatagatttttgtttataatagtgatc 18607220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 3013663 - 3013612
Alignment:
Q  5 cattaattgaataaattttaaatataaatttttgtttataatagtgatcaaa 56  Q
    |||||||||||||||| | |||||||| |||||| |||||||||||| ||||    
T  3013663 cattaattgaataaatctaaaatataattttttgcttataatagtgaccaaa 3013612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1597246 - 1597200
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataata 47  Q
    |||||||||||||||||||||| |||| || ||||| ||||||||||    
T  1597246 acatcattaattgaataaatttaaaatgtatattttcgtttataata 1597200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26344277 - 26344223
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatcaa 55  Q
    |||| ||||||| ||||||||| ||||||| ||||||  ||||||||||||||||    
T  26344277 acattattaattaaataaatttaaaatatatattttttcttataatagtgatcaa 26344223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11324516 - 11324568
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||||||| ||||| |||| | ||||||| |||||| ||||||||    
T  11324516 acatcattaattgaatgaatttaaaatgttaatttttatttatattagtgatc 11324568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11482537 - 11482589
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||||||| ||||| |||| | ||||||| |||||| ||||||||    
T  11482537 acatcattaattgaatgaatttaaaatgttaatttttatttatattagtgatc 11482589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 14365450 - 14365498
Alignment:
Q  3 atcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||||| ||| ||| | ||||||| ||||||||||||||||||||    
T  14365450 atcattaattaaatgaatataaaatatatatttttgtttataatagtga 14365498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38539535 - 38539484
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgat 52  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  38539535 acatcatttattgaataaatttaaaatataaatttttgcttataatagtgat 38539484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8826922 - 8826872
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||| | ||||||||||| ||||| ||||||||||||||||||||||    
T  8826922 acatcatttaatgaataaatttaaaatacaaatttttgtttataatagtga 8826872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26863155 - 26863100
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatcaaa 56  Q
    |||||| | ||| ||| ||||| |||||||||||||||||||||||||||| ||||    
T  26863155 acatcaattattcaatgaatttaaaatataaatttttgtttataatagtgagcaaa 26863100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3094324 - 3094274
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||| ||||||| ||| | ||| ||||||||||||||||||||||||    
T  3094324 acatcatttattgaatgaatataaaaaataaatttttgtttataatagtga 3094274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 7215564 - 7215606
Alignment:
Q  2 catcattaattgaataaattttaaatataaatttttgtttata 44  Q
    ||||||||||||||  ||||| |||||||||||||||||||||    
T  7215564 catcattaattgaacgaatttaaaatataaatttttgtttata 7215606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7740573 - 7740619
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataata 47  Q
    |||||||||||| ||| ||||| ||||||||||||||| ||||||||    
T  7740573 acatcattaatttaatgaatttaaaatataaatttttgcttataata 7740619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19597016 - 19597066
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    ||||||||| |||||| ||| | | ||||||||||||||||||||||||||    
T  19597016 acatcattagttgaattaatctaatatataaatttttgtttataatagtga 19597066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32599537 - 32599475
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatcaaataatgta 63  Q
    |||| ||||||| ||||||| | |||||||  ||||||||||||||||||| || ||||||||    
T  32599537 acataattaatttaataaatataaaatatagttttttgtttataatagtgaccagataatgta 32599475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 48603620 - 48603571
Alignment:
Q  2 catcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    ||||||||||||||||||| | ||||||| ||| ||| ||||||||||||    
T  48603620 catcattaattgaataaatctaaaatatagattcttgcttataatagtga 48603571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 16203427 - 16203475
Alignment:
Q  5 cattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||| | ||||||| | |||| |||||||||||||||||||||||||    
T  16203427 cattaaataaataaatctaaaatgtaaatttttgtttataatagtgatc 16203475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 54931876 - 54931824
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgt-ttataatagtgat 52  Q
    |||| ||||||||||||||||| ||||||| |||||| | |||||||||||||    
T  54931876 acataattaattgaataaatttaaaatatagatttttttgttataatagtgat 54931824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 89681 - 89734
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttg-tttataatagtgatc 53  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  89681 acatcattaattgaataaatttaaaatgtaaatttttgttttataatagtgatc 89734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 45045460 - 45045513
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatca 54  Q
    |||||||||||||||| ||| | ||||||| |||||||||||||||||||||||    
T  45045460 acatcattaattgaatgaatctaaaatatagatttttgtttataatagtgatca 45045513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3444679 - 3444627
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||||||| ||| | |||| |||||||||||||||||||||||||    
T  3444679 acatcattaattgaatgaatataaaatgtaaatttttgtttataatagtgatc 3444627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41753841 - 41753891
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||||||||||| ||| | |||||| |||||||||||||||||||||    
T  41753841 acatcattaattgaatgaatctaaaatattaatttttgtttataatagtga 41753891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1988926 - 1988976
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||| ||| ||||||||| ||| ||| ||||||||||||||||||||    
T  1988926 acatcatttattcaataaatttaaaaaatatatttttgtttataatagtga 1988976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10117053 - 10117103
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||||||||||| ||| | |||| |||||||||| ||||||||||||    
T  10117053 acatcattaattgaatgaatctaaaatgtaaatttttgcttataatagtga 10117103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 13496519 - 13496568
Alignment:
Q  2 catcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    ||||||||| ||||| ||||| |||| |||||||||| ||||||||||||    
T  13496519 catcattaaatgaatgaatttaaaatgtaaatttttgcttataatagtga 13496568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 45736770 - 45736822
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||    
T  45736770 acatcattaattgaatgaatttaaaatataaaattttgcttataatagtgatc 45736822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10872755 - 10872805
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||||||||||| ||| | ||||||||||||||| ||||||||||||    
T  10872755 acatcattaattgaatgaatctaaaatataaatttttgcttataatagtga 10872805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29389384 - 29389334
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||||||||||  ||| | ||||||||||||||| ||||||||||||    
T  29389384 acatcattaattgaacgaatctaaaatataaatttttgcttataatagtga 29389334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 50466870 - 50466808
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatcaaataatgta 63  Q
    |||||||||||||||| ||| | ||||||||||||||  |||||||| ||||| ||| |||||    
T  50466870 acatcattaattgaatgaatctaaaatataaatttttacttataataatgatcgaatgatgta 50466808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3648782 - 3648835
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatca 54  Q
    |||||||| ||||||| ||| | ||||||||| ||||| |||||||||||||||    
T  3648782 acatcattgattgaatgaatgtaaaatataaagttttgcttataatagtgatca 3648835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18940052 - 18940104
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    ||||||||||||||||  || | ||||||||||||||| ||||| ||||||||    
T  18940052 acatcattaattgaatgtatataaaatataaatttttgcttatattagtgatc 18940104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35987514 - 35987562
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagt 49  Q
    |||| ||||||||||||||| | ||||||||| ||||||||||| ||||    
T  35987514 acattattaattgaataaatctaaaatataaaattttgtttatattagt 35987562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 43177144 - 43177096
Alignment:
Q  2 catcattaattgaataaattttaaatataaatttttgtttataatagtg 50  Q
    ||||||||||| ||| ||||| |||| || |||||||||||||||||||    
T  43177144 catcattaattaaatgaatttaaaatgtagatttttgtttataatagtg 43177096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 88937 - 88992
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatcaaa 56  Q
    |||||||||||||||| ||| | ||||||| |||||||||||||||||| ||||||    
T  88937 acatcattaattgaatgaatataaaatatagatttttgtttataatagtaatcaaa 88992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10996303 - 10996251
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||| ||| ||||| ||||||||||||||| |||||||| |||||    
T  10996303 acatcattaattcaatgaatttaaaatataaatttttgcttataataatgatc 10996251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 44868565 - 44868519
Alignment:
Q  5 cattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||||||||||||| |||| |  ||||||||||||||||||||    
T  44868565 cattaattgaataaatttaaaatgttgatttttgtttataatagtga 44868519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15900302 - 15900355
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatca 54  Q
    |||||||| ||| ||||||| | |||||| ||||||| ||||||||||||||||    
T  15900302 acatcatttattaaataaatgtaaaatattaatttttatttataatagtgatca 15900355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1961366 - 1961314
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||| || |||| | |||| |||||||||| ||||||||||||||    
T  1961366 acatcattaattaaacaaatctaaaatgtaaatttttgcttataatagtgatc 1961314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11342053 - 11342105
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||| ||| ||| | ||||||| ||||||| ||||||||||||||    
T  11342053 acatcattaattaaatgaatctaaaatatagatttttgcttataatagtgatc 11342105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19951528 - 19951576
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagt 49  Q
    |||||||||||||||| ||| | ||||||  ||||||||||||||||||    
T  19951528 acatcattaattgaatgaatataaaatattgatttttgtttataatagt 19951576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40204497 - 40204445
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||||||| ||| |  |||||| ||||||| ||||||||||||||    
T  40204497 acatcattaattgaatgaatgtataatatagatttttgcttataatagtgatc 40204445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12383672 - 12383722
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    |||||||||||||||| ||| | |||| || ||||||||||||||||||||    
T  12383672 acatcattaattgaattaatctaaaatgtagatttttgtttataatagtga 12383722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 8449660 - 8449709
Alignment:
Q  2 catcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    ||||||||||||||| ||| | |||||| |||||||| ||||||||||||    
T  8449660 catcattaattgaatgaatctaaaatattaatttttgcttataatagtga 8449709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 8458464 - 8458513
Alignment:
Q  2 catcattaattgaataaattttaaatataaatttttgtttataatagtga 51  Q
    ||||||||||||||| ||| | |||||| |||||||| ||||||||||||    
T  8458464 catcattaattgaatgaatctaaaatattaatttttgcttataatagtga 8458513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15718476 - 15718529
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatca 54  Q
    |||||||| ||||||| |||||||||  | |||||||| |||||||||||||||    
T  15718476 acatcatttattgaatgaattttaaaagtgaatttttgcttataatagtgatca 15718529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8449631 - 8449579
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||| |||||||||||   |||||| |||||||| ||||||||||||||    
T  8449631 acatcatttattgaataaatccaaaatattaatttttgcttataatagtgatc 8449579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8458435 - 8458383
Alignment:
Q  1 acatcattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||| |||||||||||   |||||| |||||||| ||||||||||||||    
T  8458435 acatcatttattgaataaatccaaaatattaatttttgcttataatagtgatc 8458383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 30917007 - 30916959
Alignment:
Q  5 cattaattgaataaattttaaatataaatttttgtttataatagtgatc 53  Q
    |||||||||||||||| | |||| ||| |||||| ||||||||||||||    
T  30917007 cattaattgaataaatgtaaaatgtaattttttgcttataatagtgatc 30916959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 216329 - 216284
Alignment:
Q  2 catcattaattgaataaattttaaatataaatttttgtttataata 47  Q
    ||||||||||| ||| ||||| |||||||||||||||| |||||||    
T  216329 catcattaattaaatgaatttaaaatataaatttttgtatataata 216284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University