View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_low_35 (Length: 217)
Name: NF5933_low_35
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 40785638 - 40785853
Alignment:
| Q |
1 |
tatcattgcacttggagctgaagccggtcttttgtcggtgctccccgaaccttctgaagacaaaaatcaacatgtttctgttacacaaccgaaacatgaa |
100 |
Q |
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| T |
40785638 |
tatcattgcacttggagctgaagccggtcttttgtcggtgctctccgaaccttctgaagacaaaaagcaacatgtttctgttacacaaccgaaacatgaa |
40785737 |
T |
|
| Q |
101 |
atgctagaacaagaagagaaagaagcatctaacataataaacaatgcatattctgtttcagaagaacaaaatgaaaacaagcctaaggttgtcgaaaaat |
200 |
Q |
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| T |
40785738 |
atgctagaacaagaagagaaagaagcatctaacataataaacaatgcatattctgtttcagaagaacaaaatgaaaacaagcctaaggttgttgaaaaat |
40785837 |
T |
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| Q |
201 |
ctgtatctgagaagaa |
216 |
Q |
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|||||||||||||||| |
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| T |
40785838 |
ctgtatctgagaagaa |
40785853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 40793393 - 40793611
Alignment:
| Q |
1 |
tatcattgcacttggagctgaagccggtcttttgtcggtgctccccgaaccttctgaagacaaaaatcaacatgtttctg------ttacacaaccgaaa |
94 |
Q |
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|||||||||||||||||||||||| || ||| | || || || | || ||||| ||||||| ||| |||||| |||||| |||||||| ||| |
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| T |
40793393 |
tatcattgcacttggagctgaagctggacttctctcagtattctctgagccttcagaagacagaaaacaacatatttctgcgtctgttacacaa---aaa |
40793489 |
T |
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| Q |
95 |
catgaaatgctagaacaagaagagaaagaagcatctaacataataaacaatgcatattctgtttcagaagaacaaaatgaaaacaagcctaaggttgtcg |
194 |
Q |
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|||| || |||||| | |||||||||||||| | |||| |||||||||||| |||||| ||| |||||||||| ||||| ||||||||||| || | |
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| T |
40793490 |
catgtaagtttagaaccacaagagaaagaagcacgtggcatagtaaacaatgcatgttctgtctcacaagaacaaaaggaaaagaagcctaaggtggttg |
40793589 |
T |
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| Q |
195 |
aaaaatctgtatctgagaagaa |
216 |
Q |
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|||||||| |||||| ||||| |
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| T |
40793590 |
aaaaatctacatctgaaaagaa |
40793611 |
T |
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