View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_low_4 (Length: 567)
Name: NF5933_low_4
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Original strand, 48290521 - 48291078
Alignment:
| Q |
1 |
ataaagattgagatagattgattacttcattaggaaagagatgaatgagctaacgttgatgaaagcaaatacagtggttgatgttatcaattaaatgaaa |
100 |
Q |
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| T |
48290521 |
ataaagattgagatagattgattacttcattaggaaagagatgaatgagctaacgttgatgaaagcaattacagtggttgatgttatcaattaaatgaaa |
48290620 |
T |
|
| Q |
101 |
tgaaatgccctaaaagtttagacattatcaaccaaaaaaggcagtagtgttggctaattgtgatttttgcaagctaagctataatcaatttactattaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48290621 |
tgaaatgccctaaaagtttagacattatcaaccaaaaaaggcagtagtgttggctaattgtgatttttgcaagctaagctataatcaatttactattaat |
48290720 |
T |
|
| Q |
201 |
tataactagattaaagatgctacatctctttcttcatgtccctttccatttacaccactcattgcaagctttgaacgcttcttatatttcttattatcaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48290721 |
tataactagattaaagatgctacatctctttcttcatgtccctttccatttacaccactcattgcaagctttgaacgcttcttatatttcttattatcaa |
48290820 |
T |
|
| Q |
301 |
catctacctctttaattttctgttttctcaaaccttcttcacatttaattaatttcatcaattttggccaataaaaggagagaaatagatattgttatta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
48290821 |
catctacctctttaattttctgttttctcaaaccttcttcacatttaattaatttcatcaattttgaccaataaaaggagagaaatagatattattatta |
48290920 |
T |
|
| Q |
401 |
ttaattt-nnnnnnntatgggggagagattaaatttattaagctttcatattatataaaggttaatggaagtagtataaaatatcccaaattgatatttg |
499 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48290921 |
ttaatttaaaaaaaatatgggggagagattaaatttattaagctttcatattatataaaggttaatggaagtagtataaaatatcccaaattgatatttg |
48291020 |
T |
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| Q |
500 |
taattttaaattatttttgccttgccctctgaacctgcttatggttagttagtttcat |
557 |
Q |
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| T |
48291021 |
taattttaaattatttttgccttgccctctgaacctgcttatggttagttagtttcat |
48291078 |
T |
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