View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5933_low_8 (Length: 466)

Name: NF5933_low_8
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5933_low_8
NF5933_low_8
[»] chr6 (11 HSPs)
chr6 (85-446)||(28328695-28329057)
chr6 (85-446)||(28506331-28506693)
chr6 (85-206)||(28191736-28191857)
chr6 (85-206)||(28525555-28525676)
chr6 (85-206)||(28239710-28239831)
chr6 (85-206)||(28246700-28246821)
chr6 (387-446)||(28239481-28239540)
chr6 (381-446)||(28246459-28246524)
chr6 (387-446)||(28191504-28191563)
chr6 (361-403)||(28223878-28223920)
chr6 (387-446)||(28525329-28525388)
[»] scaffold0019 (2 HSPs)
scaffold0019 (85-206)||(54950-55071)
scaffold0019 (377-446)||(55240-55309)
[»] scaffold0038 (5 HSPs)
scaffold0038 (85-206)||(39872-39993)
scaffold0038 (85-206)||(46862-46983)
scaffold0038 (387-446)||(39643-39702)
scaffold0038 (381-446)||(46621-46686)
scaffold0038 (361-403)||(24376-24418)


Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 85 - 446
Target Start/End: Complemental strand, 28329057 - 28328695
Alignment:
Q  85 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28329057 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 28328958  T
Q  185 ctctgcatgaatccattcatttactnnnnnnnttccgcccatgttgtagtttggcttaaattccagcttcatatcatacaaatatgtatgatgagtccac 284  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28328957 ctctgcatgaatccattcatttactaaaaaaattccgcccatgttgtagtttggcttaaattccagcttcatatcatacaaatatgtatgatgagtccac 28328858  T
Q  285 attttaccaaacttagtcaggaga-tataaagatcatatttgttgccatggatgatcagagtgggacttgtcttatgtaaatcaaaatcattactggttg 383  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28328857 attttaccaaacttagtcaggagaatataaagatcatatttgttgccatggatgatcagagtgggacttgtcttatgtaaatcaaaatcattactggttg 28328758  T
Q  384 tatcaactgatttagtagaaatacagagagccatggaaggatgcttgttacgaaaccaaaaag 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28328757 tatcaactgatttagtagaaatacagagagccatggaaggatgcttgttacgaaaccaaaaag 28328695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 85 - 446
Target Start/End: Complemental strand, 28506693 - 28506331
Alignment:
Q  85 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28506693 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 28506594  T
Q  185 ctctgcatgaatccattcatttactnnnnnnnttccgcccatgttgtagtttggcttaaattccagcttcatatcatacaaatatgtatgatgagtccac 284  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28506593 ctctgcatgaatccattcatttactaaaaaaattccgcccatgttgtagtttggcttaaattccagcttcatatcatacaaatatgtatgatgagtccac 28506494  T
Q  285 attttaccaaacttagtcaggaga-tataaagatcatatttgttgccatggatgatcagagtgggacttgtcttatgtaaatcaaaatcattactggttg 383  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28506493 attttaccaaacttagtcaggagaatataaagatcatatttgttgccatggatgatcagagtgggacttgtcttatgtaaatcaaaatcattactggttg 28506394  T
Q  384 tatcaactgatttagtagaaatacagagagccatggaaggatgcttgttacgaaaccaaaaag 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28506393 tatcaactgatttagtagaaatacagagagccatggaaggatgcttgttacgaaaccaaaaag 28506331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 28191857 - 28191736
Alignment:
Q  85 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 184  Q
    ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | | |||||||  || ||||    
T  28191857 aaggatcggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccactctcggatgttcatatgtaac 28191758  T
Q  185 ctctgcatgaatccattcattt 206  Q
    |||||||||| |||||||||||    
T  28191757 ctctgcatgattccattcattt 28191736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 28525676 - 28525555
Alignment:
Q  85 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 184  Q
    |||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||   | ||||||| ||| |||     
T  28525676 aaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccactaactgatgttcacatataat 28525577  T
Q  185 ctctgcatgaatccattcattt 206  Q
    |||||||||| |||| ||||||    
T  28525576 ctctgcatgattccagtcattt 28525555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 28239831 - 28239710
Alignment:
Q  85 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 184  Q
    |||||| |||||||| |||||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||| ||      ||||||  || ||||    
T  28239831 aaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttccacatttgaatgttcaaatataac 28239732  T
Q  185 ctctgcatgaatccattcattt 206  Q
    |||||||||| |||||||||||    
T  28239731 ctctgcatgattccattcattt 28239710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 28246821 - 28246700
Alignment:
Q  85 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 184  Q
    |||||| |||||||| ||| || ||||||||||||| || |||| ||||||||||||||| |||||||| |||||| ||| || ||||||| ||| |||     
T  28246821 aaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttccacctcctgatgttcacatataat 28246722  T
Q  185 ctctgcatgaatccattcattt 206  Q
    |||||||||| |||| ||||||    
T  28246721 ctctgcatgattccactcattt 28246700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 28239540 - 28239481
Alignment:
Q  387 caactgatttagtagaaatacagagagccatggaaggatgcttgttacgaaaccaaaaag 446  Q
    |||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  28239540 caactgatttagtagaaaaacagagagccatggaagggagcttgttacgaaaccaaaaag 28239481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 28246524 - 28246459
Alignment:
Q  381 ttgtatcaactgatttagtagaaatacagagagccatggaaggatgcttgttacgaaaccaaaaag 446  Q
    ||||| || ||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  28246524 ttgtagcagctgatttagtagaaaaacagagagccatggaagggagcttgttacgaaaccaaaaag 28246459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 28191563 - 28191504
Alignment:
Q  387 caactgatttagtagaaatacagagagccatggaaggatgcttgttacgaaaccaaaaag 446  Q
    |||||||||||||||||| ||||| ||| | ||||||  |||||||||||||||||||||    
T  28191563 caactgatttagtagaaaaacagatagcaaaggaagggagcttgttacgaaaccaaaaag 28191504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 28223920 - 28223878
Alignment:
Q  361 taaatcaaaatcattactggttgtatcaactgatttagtagaa 403  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  28223920 taaatcaaaatcattactgattgtagcaactgatttagtagaa 28223878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 28525388 - 28525329
Alignment:
Q  387 caactgatttagtagaaatacagagagccatggaaggatgcttgttacgaaaccaaaaag 446  Q
    ||||| ||||| |||||| ||||||||| ||||||||  | |||||||||||||||||||    
T  28525388 caactaatttattagaaaaacagagagcaatggaagggaggttgttacgaaaccaaaaag 28525329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 54950 - 55071
Alignment:
Q  85 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 184  Q
    |||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  | ||||||| ||| ||||    
T  54950 aaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcggatgttcacatgtaac 55049  T
Q  185 ctctgcatgaatccattcattt 206  Q
    ||||||||| ||||||||||||    
T  55050 ctctgcatggatccattcattt 55071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 446
Target Start/End: Original strand, 55240 - 55309
Alignment:
Q  377 ctggttgtatcaactgatttagtagaaatacagagagccatggaaggatgcttgttacgaaaccaaaaag 446  Q
    |||| |||| |||||||||||||||||| | |||||||| |||||||  |||||||||||||||||||||    
T  55240 ctggatgtagcaactgatttagtagaaaaaaagagagccgtggaagggagcttgttacgaaaccaaaaag 55309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 39993 - 39872
Alignment:
Q  85 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 184  Q
    |||||| |||||||| |||||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||| ||      ||||||  || ||||    
T  39993 aaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttccacatttgaatgttcaaatataac 39894  T
Q  185 ctctgcatgaatccattcattt 206  Q
    |||||||||| |||||||||||    
T  39893 ctctgcatgattccattcattt 39872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 46983 - 46862
Alignment:
Q  85 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 184  Q
    |||||| |||||||| ||| || ||||||||||||| || |||| ||||||||||||||| |||||||| |||||| ||| || ||||||| ||| |||     
T  46983 aaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttccacctcctgatgttcacatataat 46884  T
Q  185 ctctgcatgaatccattcattt 206  Q
    |||||||||| |||| ||||||    
T  46883 ctctgcatgattccactcattt 46862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 39702 - 39643
Alignment:
Q  387 caactgatttagtagaaatacagagagccatggaaggatgcttgttacgaaaccaaaaag 446  Q
    |||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  39702 caactgatttagtagaaaaacagagagccatggaagggagcttgttacgaaaccaaaaag 39643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 46686 - 46621
Alignment:
Q  381 ttgtatcaactgatttagtagaaatacagagagccatggaaggatgcttgttacgaaaccaaaaag 446  Q
    ||||| || ||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  46686 ttgtagcagctgatttagtagaaaaacagagagccatggaagggagcttgttacgaaaccaaaaag 46621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 24418 - 24376
Alignment:
Q  361 taaatcaaaatcattactggttgtatcaactgatttagtagaa 403  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  24418 taaatcaaaatcattactgattgtagcaactgatttagtagaa 24376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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