View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5933_low_9 (Length: 418)
Name: NF5933_low_9
Description: NF5933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5933_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 213 - 402
Target Start/End: Original strand, 56316958 - 56317147
Alignment:
| Q |
213 |
aaatttggaaaatgtatcaagtgaaaatcaagcgaagacatttcaagatggaattacatacacaagaatattttcttaatgtttctcataacctcttgaa |
312 |
Q |
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| T |
56316958 |
aaatttggaaaatgtatcaagtgaaaatcaagcgaagacatttcaagatggaattacatacacaagaatattttcttaatgtttctcataacctcttgaa |
56317057 |
T |
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| Q |
313 |
gtttaaaagggaccctaatatggacctcataaaataatcgaaatgcatgtggacttgctaatgctagggtataaaaaatattgaagtcat |
402 |
Q |
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| T |
56317058 |
gtttaaaagaaaccctaatatggacctcataaaataatcgaaatgcatgtggacttgctaatgctagggtataaaaaatattgaagtcat |
56317147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 56316721 - 56316922
Alignment:
| Q |
10 |
gacatcatcataagtaaaattaaattgaaatgcaaacaaaataagattacatttacattttttctaaggcaagattacatttacatataannnnnnnnnn |
109 |
Q |
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| T |
56316721 |
gacatcatcataattaaaatgaaattgaaatgcaaacaaaataagattacatttacattttttctatggcaagattacatttacatataatgtttttctt |
56316820 |
T |
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| Q |
110 |
nnnnngactaaatttacatataatgttatattcacggggaaataatccattaatccatatgcatatgagaaataagtcactaataaagaagatcgcagcc |
209 |
Q |
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| T |
56316821 |
tttttgacaaaatttacatataatgttatattcacggggaaataatccattaatccatatgcatatgagaaataagtcactaataaagaagatcgcagcc |
56316920 |
T |
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| Q |
210 |
tc |
211 |
Q |
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| T |
56316921 |
tc |
56316922 |
T |
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