View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5934-Insertion-1 (Length: 1135)
Name: NF5934-Insertion-1
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5934-Insertion-1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 825; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 825; E-Value: 0
Query Start/End: Original strand, 9 - 970
Target Start/End: Original strand, 41875137 - 41876098
Alignment:
| Q |
9 |
atatcaagaagacaactatattttaagtgtgaaaattttcaaaagaggtgagagatggattttttatgaattcattaatatttggatttttcctcactaa |
108 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
41875137 |
atatcaagaagaaaactatattttaagtgtgaaaattttcaaaagaggtgagagatgaattttttatgaattcattaatatttggatttttccccactaa |
41875236 |
T |
|
| Q |
109 |
tttttt-gagttatctggtttactctatctactgttatactcttgnnnnnnnnnnnnnnnnngaagaaatgactatataatattttcttctgtattctat |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41875237 |
tttttttgagttatctggtttactctatctactgttatactcttgaaaaaaataataaa---gaagaaatgactatataatattttcttctgtattctat |
41875333 |
T |
|
| Q |
208 |
gtcgttagtggagcttttaaatttagaggtgcctgcaatgctgttttctctcttacagatgaagatgcttctaaaggtgttataacacacagcaggtttg |
307 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41875334 |
gtcgttagcggagcttttaaatttagaggtgcctgcaatgctgttttctctctcacagatgaagatgcttctaaaggtgttataacacacagcaggtttg |
41875433 |
T |
|
| Q |
308 |
ttttatgcaattattacataagttattttttcaaatctgattcagttaatttattctcttctaatgttgttctctgaaatcagtggaaatcatgctgctg |
407 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41875434 |
ttttatgcaataaatacataagttattttttcaaatctgattcagttaatttattctcttctaatgttgttctctgaaatcagtggaaatcatgctgctg |
41875533 |
T |
|
| Q |
408 |
cattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttgagaatgttaagaggtatgatgg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41875534 |
cattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttgagaatgttaagaggtatgatgg |
41875633 |
T |
|
| Q |
508 |
taaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttataccttcttctaatgat |
607 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41875634 |
taaggttaacttttctgaggccaacataaggtcaagagatgaagttgcgtatatattacgacaagaaaccggtgctatatttataccttcttctaatgat |
41875733 |
T |
|
| Q |
608 |
ggccgcatactgaggtagagtgtcgaatgttgattaatgttgattatagatcatccaagacttatttagataaacaatttaattttgtgttagtagcaaa |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
41875734 |
ggccgcatactgaggtagagtgtcgaatgttgattaatgttgattatagatcatccaagacttatttagataaacaacttaattttgtgttagtagcaaa |
41875833 |
T |
|
| Q |
708 |
aacacttattatataagtacttacttataaataagttatttctgtactaaaagataaaataaggtcaaattatttaatgtaagctataacctaattttta |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
41875834 |
aacacttattatataagtacttacttataaataagttatttctgtactaaaagataaaataaggtcaaattatttaatataagctataacctaattttta |
41875933 |
T |
|
| Q |
808 |
tccgttataatcatttttcggtgttgaattgattttttgagctataataataagatctacaacaacatgttacttttatttattaaacttgtaaaacttg |
907 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
41875934 |
tccgttataatcatttttcagtgttgaattgattttttgagctataataataagatctacaacaacatgttacttttatttattaaacttctaaaacttg |
41876033 |
T |
|
| Q |
908 |
atgtctagaatatgttatagggaactgtgacttgc-tttgct-agcattgctctttgacatgttt |
970 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
41876034 |
atgtctaaaatatgttatagggaactgtgacttgcttttgctaagcattgctctttgacatgttt |
41876098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 731 - 782
Target Start/End: Original strand, 5269468 - 5269519
Alignment:
| Q |
731 |
cttataaataagttatttctgtactaaaagataaaataaggtcaaattattt |
782 |
Q |
| |
|
|||||| |||| |||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
5269468 |
cttatatataaattatttctttaataaaagataaaataaagtcaaattattt |
5269519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 4e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 214 - 640
Target Start/End: Complemental strand, 40868891 - 40868457
Alignment:
| Q |
214 |
agtggagcttttaaatttagaggtgcctgcaatgctgttttctctcttacagatgaagatgcttctaaaggtgttataacacacagcaggtttgttttat |
313 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||| | | |
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|
| T |
40868891 |
agtggagcttttaaatttagaggtgcatgcaatgctgttttctctctcaatgatgaagatgcgtctaaaggggttataacacacagcaggtttgttatgt |
40868792 |
T |
|
| Q |
314 |
gcaatt---attacataag----ttattttttcaaatctgattcagttaatttattct-cttctaatgttgttctctgaaatcagtggaaatcatgctgc |
405 |
Q |
| |
|
||| | ||| || || |||||||||||||||| ||| || | |||||| | ||||| | |||||||||||||||||||||||| |||||||| |
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|
| T |
40868791 |
gcagtagtaattccagaaactgattattttttcaaatcttattttgtaattttattgttcttctgacgttgttctctgaaatcagtggaaaccatgctgc |
40868692 |
T |
|
| Q |
406 |
tgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttgagaatgttaagaggtatgat |
505 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||||||||| |||||| ||| ||||||| ||||| |||||| |||||||||| ||| |||||| | |
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|
| T |
40868691 |
tgcattggctctggcagcaaaactacgggggatccctgcatacattgttattcctaaaaatgcgccaacatgtaaaattgagaatgtgaagcggtatggt |
40868592 |
T |
|
| Q |
506 |
ggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttataccttcttctaatg |
605 |
Q |
| |
|
||| |||||| || ||||||||||| || || |||||||| ||| |||||||| | || | |||||||| |||||||| ||||||| | ||| ||||| |
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|
| T |
40868591 |
ggtcaggttatctggtctgaggccaatatgcgatcaagagaggaaactgcgaataaagtgtggcaagaaactggtgctatttttatacatccttataatg |
40868492 |
T |
|
| Q |
606 |
atggccgcatactgaggtagagtgtcgaatgttga |
640 |
Q |
| |
|
|||| |||||||||||||| | ||| ||||||||| |
|
|
| T |
40868491 |
atgggcgcatactgaggtacactgttgaatgttga |
40868457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 738 - 779
Target Start/End: Original strand, 31705029 - 31705070
Alignment:
| Q |
738 |
ataagttatttctgtactaaaagataaaataaggtcaaatta |
779 |
Q |
| |
|
||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
31705029 |
ataagctatttctgtactaaaagataaaatcatgtcaaatta |
31705070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 731 - 780
Target Start/End: Complemental strand, 41620423 - 41620374
Alignment:
| Q |
731 |
cttataaataagttatttctgtactaaaagataaaataaggtcaaattat |
780 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
41620423 |
cttatatataagttatttttgtaacaaaagataaaataaagtcaaattat |
41620374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 5e-22; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 24818392 - 24818262
Alignment:
| Q |
181 |
tatataatattttcttctgtattctatgtcg-ttagtggagcttttaaatttagaggtgcctgcaatgctgttttctctcttacagatgaagatgcttct |
279 |
Q |
| |
|
|||||||||||| ||| ||||||||||| | |||| ||||||||||||||||| ||||| ||||| |||||| ||||||| || |||||||| |||||| |
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|
| T |
24818392 |
tatataatatttccttttgtattctatgaccattagcggagcttttaaatttaggggtgcatgcaacgctgttctctctctgaccgatgaagaggcttct |
24818293 |
T |
|
| Q |
280 |
aaaggtgttataacacacagcaggtttgttt |
310 |
Q |
| |
|
||||| || | ||||||||||||| ||||| |
|
|
| T |
24818292 |
aaaggagtaactacacacagcaggtgtgttt |
24818262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 385 - 626
Target Start/End: Complemental strand, 24818185 - 24817944
Alignment:
| Q |
385 |
aatcagtggaaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaactt |
484 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||| ||||||| |||||||||| |||| ||| |||| || ||| ||||||| || |
|
|
| T |
24818185 |
aatcagtgggaaccatgctgctgcattatctttggcagcaaagataagggggatccctgcatttattgtggttccgaaaagtgcaccatcttgtaaagtt |
24818086 |
T |
|
| Q |
485 |
gagaatgttaagaggtatgatggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgcta |
584 |
Q |
| |
|
|| ||| |||||||||| ||||| || ||||| || |||||| || || | ||||||||| |||||| ||| | | || | |||||||| |||||| |
|
|
| T |
24818085 |
gaaaatattaagaggtacgatggaaacgttaatttggctgaggataatatgcagtcaagagaagaagttatgaacaaagtgaggcaagaaacaagtgcta |
24817986 |
T |
|
| Q |
585 |
tatttataccttcttctaatgatggccgcatactgaggtaga |
626 |
Q |
| |
|
| | |||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
24817985 |
tctatataccttcttcaaatgatggccgcataatgaggtaga |
24817944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 24818518 - 24818474
Alignment:
| Q |
16 |
gaagacaactatattttaagtgtgaaaattttcaaaagaggtgag |
60 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
24818518 |
gaagaaaactatattttaagtgtgaaaatttccaaaaaaggtgag |
24818474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 728 - 780
Target Start/End: Original strand, 36641810 - 36641862
Alignment:
| Q |
728 |
ttacttataaataagttatttctgtactaaaagataaaataaggtcaaattat |
780 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||||||||| |||||||||| |
|
|
| T |
36641810 |
ttacttatatataagttatttctataacaaaagataaaataaagtcaaattat |
36641862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 666 - 720
Target Start/End: Complemental strand, 24817849 - 24817795
Alignment:
| Q |
666 |
gacttatttagataaacaatttaattttgtgttagtagcaaaaacacttattata |
720 |
Q |
| |
|
||||||||||||||||||| |||| || ||||| ||| || |||||||||||||| |
|
|
| T |
24817849 |
gacttatttagataaacaacttaacttagtgtttgtaacataaacacttattata |
24817795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 738 - 782
Target Start/End: Complemental strand, 3423893 - 3423849
Alignment:
| Q |
738 |
ataagttatttctgtactaaaagataaaataaggtcaaattattt |
782 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
3423893 |
ataagttatttttgtaccaaaagataaaataaagtcaaattattt |
3423849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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