View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5934-Insertion-10 (Length: 360)
Name: NF5934-Insertion-10
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5934-Insertion-10 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 37629605 - 37629266
Alignment:
| Q |
8 |
acatctacccagttaccatctttgagaagctgaaggccactgaccatgtcatcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagac |
107 |
Q |
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| T |
37629605 |
acatctacccagttaccatctttgagaagctgaaggccactgaccttgtcatcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagac |
37629506 |
T |
|
| Q |
108 |
cctttacaaggtctggttttgggcatggagggtagtttgcaaccttggttccaaaagttggtccctttgatccatacaaagccttttttaggtacccctt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37629505 |
cctttacaaggtctggttttgggcatggagggtagtttgcaaccttggttccaaaagttggtccctttgatccatacaaagccttttttaggtacccctt |
37629406 |
T |
|
| Q |
208 |
ttctagtccaagattttcacataataagtctagtagctcctctgcaagtgtctctagcttcaaagtaaattccttcattgatttcctgcatcattgtctt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37629405 |
ttctagtccaagattttcacataataagtctagtagctcctctgcaagtgtctctagcttcaaagcaaattccttcattgatttcctgcatcattgtctt |
37629306 |
T |
|
| Q |
308 |
gaataatttagaatctcaataaattgtaatcatcattttt |
347 |
Q |
| |
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| T |
37629305 |
gaataatttagaatctcaataaattgtaatcatcattttt |
37629266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 23 - 295
Target Start/End: Original strand, 36871957 - 36872229
Alignment:
| Q |
23 |
ccatctttgagaagctgaaggccactgaccatgtcatcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagaccctttacaaggtctg |
122 |
Q |
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| T |
36871957 |
ccatctttgagcaattgtaggccactgaccttatcatcctggaagagaaggatgattcctccggcatcggtgtgagcacgaagacccttcaccagctctg |
36872056 |
T |
|
| Q |
123 |
gttttgggcatggagggtagtttgcaaccttggttccaaaagttggtccctttgatccatacaaagccttttttaggtaccccttttctagtccaagatt |
222 |
Q |
| |
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| ||||||||| |||||||||| || || ||||| |||||||||||||| |||||||||| || |||||||| ||||| || || |||||||||||||| |
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| T |
36872057 |
gatttgggcattgagggtagttggctactttggtgccaaaagttggtcctcttgatccataaaatgcctttttaaggtaacctttctctagtccaagatt |
36872156 |
T |
|
| Q |
223 |
ttcacataataagtctagtagctcctctgcaagtgtctctagcttcaaagtaaattccttcattgatttcctg |
295 |
Q |
| |
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|||||||| || || | ||||| ||||| ||| |||||| | ||| || ||||||||||||| ||||||| |
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| T |
36872157 |
ctcacataacaaatccaaaagctcttctgctagtttctctaacctcagagaaaattccttcattactttcctg |
36872229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 8927045 - 8926808
Alignment:
| Q |
24 |
catctttgagaagctgaaggccactgaccatgtcatcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagaccctttacaaggtctgg |
123 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| ||||| ||||| |||||||| | || ||||| | || || || |
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| T |
8927045 |
catctttgagaagctgaagtccactgactttgtcatcttggaagagaaggatgatgccaccagcatctgtgtgtgctctaagtcccttgatgagatcagg |
8926946 |
T |
|
| Q |
124 |
ttttgggcatggagggtagtttgcaaccttggttccaaaagttggtccctttgatccatacaaagccttttttaggtaccccttttctagtccaagattt |
223 |
Q |
| |
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|| || || ||||||||||| ||| || || |||||| |||| |||||||||||||| || | || || | |||||| || || ||||||||||| |
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| T |
8926945 |
cttaggacaaggagggtagttactaacttttgtaccaaaatttggaccctttgatccataaaacactttcttcaagtaccctttctcaagtccaagattc |
8926846 |
T |
|
| Q |
224 |
tcacataataagtctagtagctcctctgcaagtgtctc |
261 |
Q |
| |
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||||| |||||||| || || |||||||| ||| |||| |
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|
| T |
8926845 |
tcacacaataagtcaagaagttcctctgccagtttctc |
8926808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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