View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5934-Insertion-12 (Length: 238)

Name: NF5934-Insertion-12
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5934-Insertion-12
NF5934-Insertion-12
[»] chr5 (30 HSPs)
chr5 (96-238)||(26077646-26077788)
chr5 (9-120)||(40079979-40080091)
chr5 (9-89)||(14057738-14057818)
chr5 (9-89)||(19344653-19344733)
chr5 (9-119)||(30721639-30721750)
chr5 (9-72)||(33402545-33402608)
chr5 (9-122)||(9936842-9936956)
chr5 (9-118)||(14633007-14633117)
chr5 (9-118)||(27675540-27675650)
chr5 (9-89)||(1098205-1098285)
chr5 (9-89)||(13548243-13548323)
chr5 (9-89)||(20022890-20022970)
chr5 (9-89)||(20040369-20040449)
chr5 (9-60)||(5984998-5985049)
chr5 (9-72)||(41263083-41263146)
chr5 (9-66)||(32473976-32474033)
chr5 (9-89)||(1781099-1781179)
chr5 (10-66)||(27477693-27477749)
chr5 (9-72)||(2551581-2551644)
chr5 (9-72)||(30211695-30211758)
chr5 (9-72)||(40797026-40797089)
chr5 (9-91)||(8627163-8627245)
chr5 (10-64)||(35641824-35641878)
chr5 (33-74)||(25773384-25773425)
chr5 (9-50)||(28142997-28143038)
chr5 (9-50)||(39104233-39104274)
chr5 (9-50)||(40316887-40316928)
chr5 (9-50)||(41410613-41410654)
chr5 (9-89)||(14607511-14607591)
chr5 (9-89)||(31191131-31191211)
[»] chr7 (33 HSPs)
chr7 (19-123)||(7314309-7314414)
chr7 (9-118)||(23734169-23734280)
chr7 (9-92)||(7461010-7461093)
chr7 (9-72)||(40348558-40348621)
chr7 (9-91)||(36404880-36404962)
chr7 (9-90)||(31496599-31496680)
chr7 (14-118)||(42493517-42493622)
chr7 (9-89)||(16807100-16807180)
chr7 (9-57)||(26190319-26190367)
chr7 (9-89)||(38069081-38069161)
chr7 (9-89)||(40231958-40232038)
chr7 (9-72)||(9173290-9173353)
chr7 (9-90)||(28016144-28016225)
chr7 (9-90)||(47713386-47713467)
chr7 (9-65)||(5887894-5887950)
chr7 (9-72)||(33376822-33376885)
chr7 (9-72)||(38850749-38850812)
chr7 (36-102)||(44389302-44389369)
chr7 (9-118)||(25273971-25274081)
chr7 (9-75)||(27248799-27248865)
chr7 (9-118)||(30462175-30462285)
chr7 (9-74)||(3680393-3680458)
chr7 (9-58)||(5842178-5842227)
chr7 (9-58)||(9821237-9821286)
chr7 (9-58)||(10723162-10723211)
chr7 (10-75)||(23348400-23348465)
chr7 (9-50)||(26651163-26651204)
chr7 (9-54)||(32222615-32222660)
chr7 (9-50)||(35265775-35265816)
chr7 (9-50)||(38198632-38198673)
chr7 (9-50)||(38353552-38353593)
chr7 (22-75)||(39982161-39982214)
chr7 (9-89)||(35693784-35693864)
[»] chr4 (35 HSPs)
chr4 (9-118)||(36662652-36662760)
chr4 (9-118)||(3708253-3708363)
chr4 (9-122)||(53987733-53987847)
chr4 (9-125)||(33394070-33394187)
chr4 (9-89)||(8525369-8525449)
chr4 (9-120)||(31152659-31152771)
chr4 (9-73)||(38715607-38715670)
chr4 (9-119)||(29844277-29844388)
chr4 (10-120)||(42185272-42185383)
chr4 (9-107)||(50684931-50685030)
chr4 (9-118)||(18881310-18881420)
chr4 (9-90)||(37164045-37164126)
chr4 (9-89)||(39170988-39171068)
chr4 (9-89)||(43447195-43447275)
chr4 (19-90)||(48336393-48336462)
chr4 (19-118)||(48336642-48336742)
chr4 (9-89)||(55631828-55631908)
chr4 (9-72)||(28914415-28914478)
chr4 (19-74)||(35755228-35755283)
chr4 (9-69)||(43047437-43047497)
chr4 (9-72)||(1613171-1613234)
chr4 (9-72)||(4271967-4272030)
chr4 (12-75)||(27976614-27976677)
chr4 (9-72)||(39195537-39195600)
chr4 (9-72)||(39260399-39260462)
chr4 (9-72)||(46608260-46608323)
chr4 (9-72)||(47834097-47834160)
chr4 (9-91)||(23605855-23605937)
chr4 (9-122)||(31657309-31657423)
chr4 (9-102)||(51736970-51737064)
chr4 (21-74)||(10181150-10181203)
chr4 (33-66)||(42154870-42154903)
chr4 (19-72)||(48380520-48380573)
chr4 (9-89)||(10384878-10384958)
chr4 (35-91)||(39194089-39194145)
[»] chr2 (33 HSPs)
chr2 (9-92)||(15771035-15771118)
chr2 (9-75)||(18733969-18734035)
chr2 (9-89)||(5096278-5096358)
chr2 (9-72)||(10333531-10333594)
chr2 (9-119)||(25762193-25762304)
chr2 (9-89)||(7724564-7724644)
chr2 (9-89)||(8373464-8373544)
chr2 (9-89)||(12209019-12209099)
chr2 (9-89)||(38963825-38963905)
chr2 (9-89)||(40471766-40471846)
chr2 (19-74)||(3037874-3037929)
chr2 (9-64)||(5030339-5030394)
chr2 (9-72)||(16127733-16127796)
chr2 (9-64)||(25277886-25277941)
chr2 (9-72)||(41436879-41436942)
chr2 (9-58)||(4137470-4137519)
chr2 (9-90)||(8896300-8896381)
chr2 (9-66)||(11383998-11384055)
chr2 (9-90)||(16126035-16126116)
chr2 (9-101)||(18504489-18504582)
chr2 (19-75)||(33046199-33046255)
chr2 (9-88)||(5861518-5861597)
chr2 (9-60)||(7601350-7601401)
chr2 (9-72)||(37806829-37806892)
chr2 (11-89)||(6075155-6075233)
chr2 (9-91)||(22718496-22718578)
chr2 (162-220)||(27909539-27909597)
chr2 (9-91)||(41575590-41575672)
chr2 (9-91)||(43925102-43925184)
chr2 (9-90)||(16333509-16333590)
chr2 (9-58)||(37987889-37987938)
chr2 (9-50)||(45036432-45036473)
chr2 (9-89)||(31603369-31603449)
[»] chr8 (46 HSPs)
chr8 (9-118)||(13888581-13888691)
chr8 (9-74)||(35584125-35584190)
chr8 (8-72)||(36632143-36632207)
chr8 (9-72)||(7603354-7603417)
chr8 (9-72)||(25118833-25118896)
chr8 (9-72)||(29917879-29917942)
chr8 (9-72)||(38842210-38842273)
chr8 (19-90)||(40645638-40645709)
chr8 (9-118)||(9615523-9615633)
chr8 (9-126)||(27301854-27301972)
chr8 (9-118)||(44887666-44887776)
chr8 (9-74)||(7431270-7431335)
chr8 (9-90)||(29616277-29616358)
chr8 (9-89)||(4327070-4327150)
chr8 (9-89)||(25691548-25691628)
chr8 (9-89)||(30464462-30464542)
chr8 (9-72)||(3466330-3466393)
chr8 (9-119)||(17523804-17523915)
chr8 (9-72)||(20671303-20671366)
chr8 (9-118)||(1156529-1156639)
chr8 (9-71)||(1645357-1645419)
chr8 (9-101)||(4960168-4960261)
chr8 (9-90)||(8496837-8496918)
chr8 (9-74)||(25256484-25256549)
chr8 (9-58)||(44039886-44039935)
chr8 (19-91)||(11988739-11988811)
chr8 (9-89)||(14378637-14378717)
chr8 (9-89)||(25009174-25009254)
chr8 (19-101)||(9420714-9420797)
chr8 (36-114)||(10658155-10658234)
chr8 (9-72)||(14511887-14511950)
chr8 (36-102)||(20167593-20167660)
chr8 (9-72)||(43184730-43184793)
chr8 (9-67)||(30653412-30653470)
chr8 (9-91)||(37094160-37094242)
chr8 (9-50)||(5777505-5777546)
chr8 (9-66)||(8058975-8059032)
chr8 (9-58)||(15870236-15870285)
chr8 (9-50)||(23437764-23437805)
chr8 (21-74)||(29360899-29360952)
chr8 (9-58)||(42150101-42150150)
chr8 (10-50)||(9459244-9459284)
chr8 (9-102)||(11756792-11756888)
chr8 (9-112)||(16345184-16345287)
chr8 (19-71)||(20671204-20671256)
chr8 (9-89)||(21132879-21132959)
[»] chr3 (54 HSPs)
chr3 (9-118)||(23631541-23631651)
chr3 (9-91)||(53274944-53275026)
chr3 (9-124)||(901037-901153)
chr3 (19-118)||(28229005-28229104)
chr3 (9-89)||(34669638-34669718)
chr3 (9-118)||(37166481-37166592)
chr3 (9-118)||(4229137-4229247)
chr3 (9-118)||(29720395-29720505)
chr3 (9-122)||(29793327-29793441)
chr3 (10-107)||(50888356-50888454)
chr3 (9-121)||(9484593-9484706)
chr3 (9-74)||(21271897-21271962)
chr3 (9-89)||(12948070-12948150)
chr3 (9-89)||(16434806-16434886)
chr3 (9-89)||(29455657-29455737)
chr3 (8-72)||(32961293-32961357)
chr3 (9-61)||(38878427-38878479)
chr3 (9-89)||(42098576-42098656)
chr3 (19-118)||(47069406-47069506)
chr3 (9-89)||(49076375-49076455)
chr3 (9-65)||(54684617-54684673)
chr3 (9-107)||(10819392-10819491)
chr3 (9-72)||(34263653-34263716)
chr3 (9-72)||(34555198-34555261)
chr3 (9-72)||(36364712-36364775)
chr3 (9-122)||(2643218-2643332)
chr3 (9-118)||(4945800-4945910)
chr3 (9-102)||(28958948-28959042)
chr3 (9-118)||(48927751-48927861)
chr3 (9-102)||(52094043-52094137)
chr3 (9-58)||(18013419-18013468)
chr3 (9-121)||(29809342-29809455)
chr3 (19-119)||(35717854-35717955)
chr3 (9-58)||(36179085-36179134)
chr3 (9-58)||(47340033-47340082)
chr3 (9-117)||(53055574-53055683)
chr3 (10-74)||(935076-935140)
chr3 (9-72)||(36594367-36594431)
chr3 (19-91)||(43370319-43370391)
chr3 (9-89)||(46866373-46866453)
chr3 (9-89)||(50673707-50673787)
chr3 (19-74)||(21489963-21490018)
chr3 (9-72)||(26759526-26759589)
chr3 (36-75)||(45093897-45093936)
chr3 (11-69)||(1325498-1325556)
chr3 (9-122)||(1778357-1778471)
chr3 (9-118)||(4464881-4464991)
chr3 (9-67)||(43394507-43394565)
chr3 (19-118)||(5029988-5030089)
chr3 (19-72)||(38833924-38833977)
chr3 (9-74)||(42247157-42247222)
chr3 (9-74)||(48143914-48143979)
chr3 (9-50)||(48690204-48690245)
chr3 (19-102)||(15503184-15503268)
[»] chr1 (39 HSPs)
chr1 (9-121)||(8048706-8048819)
chr1 (9-102)||(48312045-48312138)
chr1 (10-74)||(2612034-2612098)
chr1 (9-112)||(27462746-27462848)
chr1 (23-119)||(38737377-38737474)
chr1 (9-74)||(48896964-48897029)
chr1 (9-89)||(10100471-10100551)
chr1 (9-69)||(52749331-52749391)
chr1 (9-68)||(2138987-2139046)
chr1 (9-72)||(23337854-23337917)
chr1 (9-72)||(43453123-43453186)
chr1 (9-72)||(44741390-44741453)
chr1 (9-72)||(49903643-49903706)
chr1 (9-118)||(31932136-31932246)
chr1 (9-74)||(51924928-51924994)
chr1 (9-121)||(1821586-1821699)
chr1 (21-101)||(27581039-27581120)
chr1 (9-66)||(31971440-31971497)
chr1 (9-90)||(38786904-38786985)
chr1 (9-89)||(6017407-6017487)
chr1 (9-89)||(10124139-10124219)
chr1 (9-89)||(26543898-26543978)
chr1 (9-89)||(32968143-32968223)
chr1 (10-58)||(36035747-36035795)
chr1 (11-118)||(41414203-41414311)
chr1 (9-89)||(45299348-45299428)
chr1 (9-61)||(47912339-47912391)
chr1 (9-102)||(52688546-52688641)
chr1 (9-72)||(7075288-7075351)
chr1 (9-72)||(44963630-44963693)
chr1 (20-74)||(27990760-27990814)
chr1 (13-67)||(32495199-32495253)
chr1 (9-91)||(41855679-41855761)
chr1 (9-91)||(48389094-48389176)
chr1 (9-50)||(5606349-5606390)
chr1 (9-50)||(5945834-5945875)
chr1 (9-50)||(31651859-31651900)
chr1 (22-66)||(15443412-15443456)
chr1 (9-100)||(50014519-50014611)
[»] chr6 (26 HSPs)
chr6 (9-120)||(9022838-9022950)
chr6 (9-118)||(31708893-31709003)
chr6 (9-89)||(2141598-2141678)
chr6 (9-89)||(6142465-6142545)
chr6 (9-89)||(29514984-29515064)
chr6 (9-72)||(16661560-16661623)
chr6 (9-122)||(24798504-24798618)
chr6 (9-120)||(4890084-4890196)
chr6 (10-66)||(16120833-16120889)
chr6 (9-89)||(17417672-17417752)
chr6 (9-89)||(24825195-24825275)
chr6 (9-89)||(32541435-32541515)
chr6 (9-72)||(30699308-30699371)
chr6 (14-118)||(17496281-17496386)
chr6 (9-62)||(24693195-24693248)
chr6 (9-89)||(2397800-2397880)
chr6 (9-89)||(2656628-2656708)
chr6 (9-89)||(6188614-6188694)
chr6 (9-72)||(10105858-10105921)
chr6 (9-118)||(2667283-2667393)
chr6 (10-64)||(12869373-12869427)
chr6 (9-50)||(995632-995673)
chr6 (33-74)||(3686951-3686992)
chr6 (9-101)||(17179356-17179447)
chr6 (9-101)||(32673765-32673858)
chr6 (10-66)||(2555295-2555351)
[»] scaffold0500 (1 HSPs)
scaffold0500 (9-90)||(629-710)
[»] scaffold0687 (1 HSPs)
scaffold0687 (9-72)||(1036-1099)
[»] scaffold0069 (1 HSPs)
scaffold0069 (8-118)||(4441-4552)
[»] scaffold0221 (1 HSPs)
scaffold0221 (9-89)||(5406-5486)
[»] scaffold0204 (2 HSPs)
scaffold0204 (19-90)||(23915-23984)
scaffold0204 (19-118)||(24164-24264)
[»] scaffold0001 (1 HSPs)
scaffold0001 (9-89)||(183996-184076)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 26077646 - 26077788
Alignment:
Q  96 tctattgtaggaaggagggagtaataattaaaataactaaataatttaaacttatannnnnnnnagatgaattaagagtcagaaagacatcaaggagaac 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |        ||||||||||| |||||||||||||||||||||||     
T  26077646 tctattgtaggaaggagggagtaataattaaaataactaaataatttaaacttaaattttttttagatgaattaaaagtcagaaagacatcaaggagaat 26077745  T
Q  196 attagatatcccgactagatcggcacctttaagaaaccttcat 238  Q
     ||||| || |||||||  ||| ||||||||| ||||||||||    
T  26077746 tttagacattccgactaagtcgacacctttaaaaaaccttcat 26077788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 40080091 - 40079979
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| |||||||||||   |||||||||||||||||| | ||||| || ||||||| || || | | |||||||||||  |||||||||||||||    
T  40080091 cttatatgatattatttatctatgtatattagtagaaaaatatggtcaaagtaagttaggttaaaattgtaaattttcaaataggtcatctattgtagga 40079992  T
Q  108 aggagggagtaat 120  Q
     ||||||||||||    
T  40079991 cggagggagtaat 40079979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 14057818 - 14057738
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  ||||||| |||||||||| ||||||| || |||||||||| || | |||||||||||    
T  14057818 cttatatgatattatttatctttgtatattaatagaaaaatatgatcaaagtaagttaggtcaaaattgcatattttcaaa 14057738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 19344653 - 19344733
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | |||||||| |||||||||| || | | |||||||||    
T  19344653 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaaataagttaggtcaaaattgcacattttcaaa 19344733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 30721639 - 30721750
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  ||||||| |||||||||| | |||||||| |||||||||| || | | |||||||||||  |||| |||||  |||    
T  30721639 cttatatgatattatttatctttgtatattaatagaaaaatatggtcaaaataagttaggtcaaaattgcacattttcaaatatgtcatttattgcggga 30721738  T
Q  108 aggagggagtaa 119  Q
     |||||||||||    
T  30721739 tggagggagtaa 30721750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 33402545 - 33402608
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||||| || ||||||||||    
T  33402545 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaa 33402608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 9936842 - 9936956
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||||||  |||| |||| || | | ||||| ||||| ||||| |||||  |||    
T  9936842 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaaataaattagatcaaaattgcacatttttaaatatatcatttattgcggga 9936941  T
Q  108 aggagggagtaataa 122  Q
     ||||||||||||||    
T  9936942 cggagggagtaataa 9936956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 14633117 - 14633007
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||| ||||||||||| | ||||| || |||||||||| || | | ||||||||| | ||||| ||||| ||||    
T  14633117 cttatatgatattatttatctttgtatatttgtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaacagatcatttattgcagga 14633018  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  14633017 cggagggagta 14633007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 27675650 - 27675540
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaataa-tcatctattgtagga 107  Q
    ||||||||| |||||||||||   |||||||||||||||||| ||||||| || | |||||||| || | | |||||||||||| |||| |||||  |||    
T  27675650 cttatatgatattatttatctatgtatattagtagaaaaatatgatcaaagtaagctaggtcaaaattgcaaattttcaaataagtcatttattgcggga 27675551  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  27675550 cggagggagta 27675540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 1098285 - 1098205
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  1098285 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 1098205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 13548323 - 13548243
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  13548323 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 13548243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 20022970 - 20022890
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  20022970 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 20022890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 20040369 - 20040449
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  20040369 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 20040449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 5985049 - 5984998
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaat 60  Q
    ||||||||| ||||||||||||  |||||||||||||||||||| |||||||    
T  5985049 cttatatgatattatttatctttgtatattagtagaaaaatacggtcaaaat 5984998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 41263083 - 41263146
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||||||||    
T  41263083 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaa 41263146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 32473976 - 32474033
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgtta 66  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | |||||||| ||||    
T  32473976 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaaataagtta 32474033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 1781099 - 1781179
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| ||  ||||||||| || | | |||||||||    
T  1781099 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaacttaggtcaaaattgcacattttcaaa 1781179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 27477693 - 27477749
Alignment:
Q  10 ttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgtta 66  Q
    |||||||| ||||||||||||  |||||||||| ||||||||| ||||| |||||||    
T  27477693 ttatatgatattatttatctttgtatattagtaaaaaaatacggtcaaagtatgtta 27477749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 2551581 - 2551644
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||| | ||||||||||||  |||||||||||||||||| | | |||||| ||||||||||    
T  2551581 cttatataatattatttatctttatatattagtagaaaaatatggttaaaataagttaggtcaa 2551644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 30211695 - 30211758
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||| ||||    
T  30211695 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttagatcaa 30211758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 40797026 - 40797089
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    |||||||||  |||||||||||  ||||||||| |||||||||||||||| |  ||||||||||    
T  40797026 cttatatgatgttatttatctttgtatattagttgaaaaatacgatcaaagttagttaggtcaa 40797089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 8627245 - 8627163
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    ||||||| ||||||||||||||  |||||||||| ||||||| | ||||| || ||||| |||| || | | |||||||||||    
T  8627245 cttatataacattatttatctttgtatattagtaaaaaaatatggtcaaagtaagttagatcaaaattgcacattttcaaata 8627163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 35641878 - 35641824
Alignment:
Q  10 ttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgt 64  Q
    |||||||| ||||||||||||  |||||||||||||||||| | ||||| |||||    
T  35641878 ttatatgatattatttatctttatatattagtagaaaaatatggtcaaagtatgt 35641824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 25773384 - 25773425
Alignment:
Q  33 tatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    |||||||||||||||||| | ||||| |||||||||||||||    
T  25773384 tatattagtagaaaaatatggtcaaagtatgttaggtcaata 25773425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 28143038 - 28142997
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  28143038 cttatatgatattatttatctttgtatattagtagaaaaata 28142997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 39104233 - 39104274
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  39104233 cttatatgatattatttatctttgtatattagtagaaaaata 39104274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 40316928 - 40316887
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  40316928 cttatatgatattatttatctttgtatattagtagaaaaata 40316887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 41410613 - 41410654
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  41410613 cttatatgatattatttatctttgtatattagtagaaaaata 41410654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 14607511 - 14607591
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| |||| |||||||  |||||||||||||||||| | ||||| ||  ||||||||| || | | |||||||||    
T  14607511 cttatatgatattacttatctttgtatattagtagaaaaatatggtcaaattaaattaggtcaaaattgcacattttcaaa 14607591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 31191131 - 31191211
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  ||||||| |||||||||| | ||||| ||  ||||||||| || | | |||||||||    
T  31191131 cttatatgatattatttatctttgtatattaatagaaaaatatggtcaaagtaaattaggtcaaaattgcacattttcaaa 31191211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 7314309 - 7314414
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtaggaaggagggagt 117  Q
    ||||||||||||  |||||||||||||||||| | ||||| |||||||||||||||  | | ||| ||||||| |||||||||||||||| |||||||||    
T  7314309 attatttatctttgtatattagtagaaaaatatggtcaaagtatgttaggtcaatagtgcaaattctcaaatagatcatctattgtaggacggagggagt 7314408  T
Q  118 aataat 123  Q
    | ||||    
T  7314409 actaat 7314414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 23734280 - 23734169
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatg-ttaggtcaatatggaatattttcaaat-aatcatctattgtagg 106  Q
    ||||||||| ||||||||||||| ||||||||||||||||||   |||||||||| ||| |||||||  | |||||||||||| ||||||||||| |||     
T  23734280 cttatatgatattatttatcttcgtatattagtagaaaaatatagtcaaaatatgtttaagtcaatagtgcatattttcaaataaatcatctattataga 23734181  T
Q  107 aaggagggagta 118  Q
    | ||| ||||||    
T  23734180 acggaaggagta 23734169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 7461010 - 7461093
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaataa 92  Q
    ||||||||| |||||||||||| ||||||||||  ||||||||  ||||||||| |||  ||||||  ||||||||||||||||    
T  7461010 cttatatgatattatttatctttttatattagtgaaaaaatacagtcaaaatatattatatcaataatgaatattttcaaataa 7461093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 40348558 - 40348621
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||||||||| |||||||    
T  40348558 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaaatatgtcaggtcaa 40348621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 36404880 - 36404962
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    ||||||| | ||||||||||||  ||||||||||||||||||| ||||||||| ||||| |||| || | | |||||||||||    
T  36404880 cttatataatattatttatctttctatattagtagaaaaatacaatcaaaatacgttagatcaaaattgcacattttcaaata 36404962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 31496599 - 31496680
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||| ||||||||||||  ||||||| |||||||||||| ||||| || |||||||||| || | | ||||||||||    
T  31496599 cttatatgatattatttatctttgtatattaatagaaaaatacggtcaaagtaagttaggtcaaaattgtacattttcaaat 31496680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 42493622 - 42493517
Alignment:
Q  14 atgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtaggaaggag 112  Q
    |||| ||||||||||||  |||||||||||||||||| | ||||| ||||||||||||||   | | ||| |||||||  ||||||||||| ||| ||||    
T  42493622 atgatattatttatctttgtatattagtagaaaaatatggtcaaagtatgttaggtcaatcgcgcacattgtcaaataggtcatctattgtgggacggag 42493523  T
Q  113 ggagta 118  Q
    ||||||    
T  42493522 ggagta 42493517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 16807100 - 16807180
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  16807100 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 16807180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 26190319 - 26190367
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaa 57  Q
    ||||||||| ||||||||||||  |||||||||||||||||||||||||    
T  26190319 cttatatgaaattatttatctttgtatattagtagaaaaatacgatcaa 26190367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 38069161 - 38069081
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  38069161 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 38069081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 40232038 - 40231958
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||||||  ||||||||| || | | |||||||||    
T  40232038 cttatatgatattatttatctttatatattagtagaaaaatatggtcaaaataaattaggtcaaaattgcacattttcaaa 40231958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 9173290 - 9173353
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||||||||    
T  9173290 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaa 9173353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 28016225 - 28016144
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||| |||| || | | ||||||||||    
T  28016225 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttagatcaaaattgcacattttcaaat 28016144  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 47713386 - 47713467
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||| ||||||||||||  |||||||| | ||||||||| ||||| || |||||||||| || | | ||||||||||    
T  47713386 cttatatgatattatttatctttgtatattagcaaaaaaatacggtcaaagtaagttaggtcaaaattgcacattttcaaat 47713467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 5887950 - 5887894
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgtt 65  Q
    ||||||||| || |||| ||||  |||||||||||||||||| ||||||||||||||    
T  5887950 cttatatgatatcatttgtctttgtatattagtagaaaaatatgatcaaaatatgtt 5887894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 33376885 - 33376822
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||| ||||  ||||||| |||||||||||| ||||| || ||||||||||    
T  33376885 cttatatgatattatttttctttgtatattaatagaaaaatacggtcaaagtaagttaggtcaa 33376822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 38850812 - 38850749
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  ||||||||| |||||||| | ||||| || ||||||||||    
T  38850812 cttatatgatattatttatctttgtatattagtggaaaaatatggtcaaagtaagttaggtcaa 38850749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 44389369 - 44389302
Alignment:
Q  36 attagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattg 102  Q
    |||||||||||||||  |||||||||||||| |||||||  | ||||| ||||||| |||||||||||    
T  44389369 attagtagaaaaatattatcaaaatatgttaagtcaatagtgtatattgtcaaatagatcatctattg 44389302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 25273971 - 25274081
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||| | ||||||||||||  ||||||||||||||| || | ||||| || |||||||||| || | | ||||||||| | ||||| ||||| ||||    
T  25273971 cttatataatattatttatctttgtatattagtagaaaattatggtcaaagtaagttaggtcaaaattgcacattttcaaacagatcatttattgcagga 25274070  T
Q  108 aggagggagta 118  Q
     ||| ||||||    
T  25274071 cggatggagta 25274081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 27248799 - 27248865
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatat 75  Q
    ||||||||| |||| |||| ||  |||||||||||||||||  ||||||| |||||||| |||||||    
T  27248799 cttatatgatattaattatttttgtatattagtagaaaaatctgatcaaagtatgttagttcaatat 27248865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 30462175 - 30462285
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| | ||||| || |||| ||||| || | | ||||||||| | ||||| |||||  |||    
T  30462175 cttatatgatattatttatctttgtatattagtaaaaaaatatggtcaaagtaagttaagtcaaaattgcacattttcaaacagatcatttattgcggga 30462274  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  30462275 cggagggagta 30462285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 3680458 - 3680393
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    ||||||||| ||||||||| ||  |||||||||| ||||||| | ||||||||||| | |||||||    
T  3680458 cttatatgatattatttatatttgtatattagtataaaaataaggtcaaaatatgtcaagtcaata 3680393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 5842227 - 5842178
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaa 58  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| |||||||    
T  5842227 cttatatgatattatttatctttatatattagtataaaaatatgatcaaa 5842178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 9821237 - 9821286
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaa 58  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| |||||||    
T  9821237 cttatatgatattatttatctttatatattagtaaaaaaatatgatcaaa 9821286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 10723162 - 10723211
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaa 58  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| |||||||    
T  10723162 cttatatgatattatttatctttatatattagtaaaaaaatatgatcaaa 10723211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 23348465 - 23348400
Alignment:
Q  10 ttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatat 75  Q
    ||||||||  |||||||||||  |||||||||| ||||||| | ||||| |||||||| |||||||    
T  23348465 ttatatgatgttatttatctttgtatattagtaaaaaaatatggtcaaagtatgttagttcaatat 23348400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 26651163 - 26651204
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  26651163 cttatatgatattatttatctttgtatattagtagaaaaata 26651204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 32222660 - 32222615
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgat 54  Q
    ||||||||| ||||||||||||  ||||||| ||||||||||||||    
T  32222660 cttatatgatattatttatctttgtatattaatagaaaaatacgat 32222615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 35265775 - 35265816
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  35265775 cttatatgatattatttatctttgtatattagtagaaaaata 35265816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 38198632 - 38198673
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  38198632 cttatatgatattatttatctttgtatattagtagaaaaata 38198673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 38353552 - 38353593
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  38353552 cttatatgatattatttatctttgtatattagtagaaaaata 38353593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 39982214 - 39982161
Alignment:
Q  22 atttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatat 75  Q
    |||||||||  ||||||||||||||||| |  |||||||||| |||||||||||    
T  39982214 atttatctttgtatattagtagaaaaatgcagtcaaaatatgctaggtcaatat 39982161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 35693784 - 35693864
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||| ||  |||||||||||||||||| | || || || |||||||||| || | | |||||||||    
T  35693784 cttatatgatattatttatttttgtatattagtagaaaaatatggtcgaagtaagttaggtcaaaattgcacattttcaaa 35693864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 36662652 - 36662760
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaataa-tcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | |  ||||||||||| ||||||  | |||||||||||||| |||||||||||||||    
T  36662652 cttatatgatattatttatctttatatattagtagaaaaataaggt--aaatatgttagatcaatagtgcatattttcaaataagtcatctattgtagga 36662749  T
Q  108 aggagggagta 118  Q
     |||| |||||    
T  36662750 cggagagagta 36662760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 3708363 - 3708253
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||||| || |||||||||| || | | ||||||||| | ||||| |||||| |||    
T  3708363 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgcacattttcaaacagatcatttattgtggga 3708264  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  3708263 cggagggagta 3708253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 53987733 - 53987847
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat-aatcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||||| ||||| | | ||||| ||||  ||||||||||||||||    
T  53987733 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggttaatattgcacatttttaaatggatcatctattgtagga 53987832  T
Q  108 aggagggagtaataa 122  Q
      |||| ||||||||    
T  53987833 cagaggaagtaataa 53987847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 33394187 - 33394070
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat-aatcatctattgtagga 107  Q
    ||||||||| ||||||||||||| |||||||||||||||||| | ||||| || |||||||||| || | | ||||| ||||   ||| ||||||| |||    
T  33394187 cttatatgagattatttatcttcgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacatttttaaatgggtcacctattgtggga 33394088  T
Q  108 aggagggagtaataatta 125  Q
     ||||| |||||||||||    
T  33394087 cggaggaagtaataatta 33394070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 8525369 - 8525449
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| |||||||||| |  |||||||||||||||||| ||||||| || |||||||||| || | |||||||||||    
T  8525369 cttatatgatattatttatccttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgcatattttcaaa 8525449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 31152771 - 31152659
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | ||||||||| |  |||| |||||| |||    
T  31152771 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaacaggtcatttattgtggga 31152672  T
Q  108 aggagggagtaat 120  Q
     ||||||||||||    
T  31152671 cggagggagtaat 31152659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 38715670 - 38715607
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaat 73  Q
    ||||||||| |||||||||||| | ||||||||||||||||||| |||||||||||||| |||||    
T  38715670 cttatatgatattatttatcttgt-atattagtagaaaaatacggtcaaaatatgttagatcaat 38715607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 29844277 - 29844388
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||| | ||||||||||||  ||||||| |||||||||||| | ||| ||| |||| ||||||  | ||||||| ||||| ||||||||||||| ||    
T  29844277 cttatataatattatttatctttatatattaatagaaaaatacggttaaagtatcttagatcaataatgcatattttgaaatagatcatctattgtaaga 29844376  T
Q  108 aggagggagtaa 119  Q
     |||||||||||    
T  29844377 cggagggagtaa 29844388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 42185383 - 42185272
Alignment:
Q  10 ttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat-aatcatctattgtaggaa 108  Q
    |||||||| ||||||||||||  |||||||||||||||||| | ||||| ||  ||||||||| || | | ||||||||||  |||||||||||  |||     
T  42185383 ttatatgatattatttatctttgtatattagtagaaaaatatggtcaaactaaattaggtcaaaattgcaaattttcaaatggatcatctattgcgggac 42185284  T
Q  109 ggagggagtaat 120  Q
    ||||||||||||    
T  42185283 ggagggagtaat 42185272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 50685030 - 50684931
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||||| || ||||| |||| || | ||||||| ||||| || |||||||| ||||    
T  50685030 cttatatgatattatttatctttatatattagtagaaaaatatgatcaaagtaagttagatcaaaattgcatatttttaaatagattatctattggagga 50684931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 18881310 - 18881420
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  ||||||||||||||||||   ||||| ||| ||| |||||||    | |||||||||||  |||||||||||||||    
T  18881310 cttatatgatattatttatctttgtatattagtagaaaaatatagtcaaagtatattaagtcaatagttcacattttcaaataggtcatctattgtagga 18881409  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  18881410 cggagggagta 18881420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 37164126 - 37164045
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||| ||||||||||||  ||||||||||||||||||   ||||| || |||||||||| || | ||||||||||||    
T  37164126 cttatatgatattatttatctttgtatattagtagaaaaatatagtcaaagtaagttaggtcaaaattgtatattttcaaat 37164045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 39171068 - 39170988
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||| | ||||||||||||  |||||||||||||||||| | |||||||| |||||||||| || | | |||||||||    
T  39171068 cttatattatattatttatctttgtatattagtagaaaaatatggtcaaaataagttaggtcaaaattgcacattttcaaa 39170988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 43447275 - 43447195
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  43447275 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 43447195  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 48336393 - 48336462
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||||||  |||||||||||||||||||||||||| || |||||||||| || | | ||||||||||    
T  48336393 attatttatctt--tatattagtagaaaaatacgatcaaagtaagttaggtcaaaattgcacattttcaaat 48336462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 48336642 - 48336742
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtaggaaggagggagt 117  Q
    ||||| ||||||  |||||||||||||||||||| ||||||||||||| |||||||  | | ||||| |||||  ||||||||| || || |||||||||    
T  48336642 attatctatctttgtatattagtagaaaaatacggtcaaaatatgttaagtcaatagtgcacatttttaaataggtcatctattataagacggagggagt 48336741  T
Q  118 a 118  Q
    |    
T  48336742 a 48336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 55631828 - 55631908
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| | |||||||| |||||||||| || | | |||||||||    
T  55631828 cttatatgatattatttatctttgtatattagtaaaaaaatatggtcaaaataagttaggtcaaaattgcacattttcaaa 55631908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 28914478 - 28914415
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||||||||    
T  28914478 cttatatgatattatttatctttatatattagtagaaaaatatggtcaaagtaagttaggtcaa 28914415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 35755283 - 35755228
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    ||||||||||||  |||||||||| ||||||| ||||||||||||| |||||||||    
T  35755283 attatttatctttatatattagtataaaaatatgatcaaaatatgtcaggtcaata 35755228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 43047497 - 43047437
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggt 69  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||    
T  43047497 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggt 43047437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 1613171 - 1613234
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| ||  |||||||||    
T  1613171 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaaattaggtcaa 1613234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 4271967 - 4272030
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  ||||||| |||||||||||  ||||| || ||||||||||    
T  4271967 cttatatgatattatttatctttatatattaatagaaaaatacagtcaaagtaagttaggtcaa 4272030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 27976677 - 27976614
Alignment:
Q  12 atatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatat 75  Q
    |||||| ||||||||||||  ||||||| || ||||||| ||||||||||| |||| |||||||    
T  27976677 atatgatattatttatctttgtatattaataaaaaaatatgatcaaaatatattagatcaatat 27976614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 39195600 - 39195537
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| | ||||| ||||| |||||||    
T  39195600 cttatatgatattatttatctttgtatattagtataaaaatatggtcaaagtatgtcaggtcaa 39195537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 39260462 - 39260399
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  ||||||||||||||||||   ||||||||  |||||||||    
T  39260462 cttatatgatattatttatctttgtatattagtagaaaaatattgtcaaaataaattaggtcaa 39260399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 46608323 - 46608260
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| | ||||| || ||||||||||    
T  46608323 cttatatgatattatttatctttgtatattagtataaaaatatggtcaaagtaagttaggtcaa 46608260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 47834097 - 47834160
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||| |||||    
T  47834097 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttatgtcaa 47834160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 23605855 - 23605937
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    ||||||||| |||||||||||   ||| |||||||||||||| ||||||| || | |||||||| || | | |||||||||||    
T  23605855 cttatatgatattatttatctatgtatgttagtagaaaaatatgatcaaagtaagctaggtcaaaattgtaaattttcaaata 23605937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 31657309 - 31657423
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| |||||||||||   |||||||||||||||||| | ||||| || | |||||||| || | | ||||| |||||  |||| |||||  |||    
T  31657309 cttatatgatattatttatctatgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaatttttaaataggtcatttattgcggga 31657408  T
Q  108 aggagggagtaataa 122  Q
     ||||||||||||||    
T  31657409 cggagggagtaataa 31657423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 51737064 - 51736970
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattg 102  Q
    |||| |||| ||||||||||||  |  ||||||||||||||| | ||||||||| ||| |||||||  | ||||| ||||||| |||||||||||    
T  51737064 cttacatgatattatttatctttgtgaattagtagaaaaatatggtcaaaatatattaagtcaataatgtatattgtcaaatagatcatctattg 51736970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 10181150 - 10181203
Alignment:
Q  21 tatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    ||||||||||  |||||||||||||||||  | ||||||||||||| |||||||    
T  10181150 tatttatctttgtatattagtagaaaaatgtggtcaaaatatgttaagtcaata 10181203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 42154903 - 42154870
Alignment:
Q  33 tatattagtagaaaaatacgatcaaaatatgtta 66  Q
    |||||||||||||||||| |||||||||||||||    
T  42154903 tatattagtagaaaaatatgatcaaaatatgtta 42154870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 48380573 - 48380520
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||||||  |||||||||||||||||| | ||||| || ||||||||||    
T  48380573 attatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaa 48380520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 10384958 - 10384878
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||  ||||||||||||  |||||||||||||||||| | | ||| || |||||||||| || | | |||||||||    
T  10384958 cttatatgttattatttatctttgtatattagtagaaaaatatggttaaagtaagttaggtcaaaattgcacattttcaaa 10384878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 39194089 - 39194145
Alignment:
Q  35 tattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    |||||||||||||||||  ||||| ||||||| |||||||| | ||||| |||||||    
T  39194089 tattagtagaaaaatacagtcaaagtatgttaagtcaatattgtatattgtcaaata 39194145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 15771035 - 15771118
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaataa 92  Q
    ||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||||||| ||||||  | | ||||||||||||    
T  15771035 cttatatgatattatttatctttatatattaatagaaaaatacgatcaaaatatgttagatcaatagtgcacattttcaaataa 15771118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 18734035 - 18733969
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatat 75  Q
    |||| |||| ||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  18734035 cttacatgaaattttttatcttcgtatattagtagaaaaatacaatcaaaatatgttaagtcaatat 18733969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 5096358 - 5096278
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| |||||||||| |||| ||||| || | | |||||||||    
T  5096358 cttatatgatattatttatctttatatattagtagaaaaatatgatcaaaataagttatgtcaaaattgtacattttcaaa 5096278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 10333531 - 10333594
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | |||||||| ||||||||||    
T  10333531 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaaataagttaggtcaa 10333594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 25762304 - 25762193
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  ||||||| |||||||||| | || || ||| |||||||||||  | | ||||||||| | |||||||||| |||||    
T  25762304 cttatatgatattatttatctttgtatattaatagaaaaatagggtcgaagtatattaggtcaatagtgcacattttcaaacagatcatctattatagga 25762205  T
Q  108 aggagggagtaa 119  Q
     |||||||||||    
T  25762204 cggagggagtaa 25762193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 7724564 - 7724644
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  7724564 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 7724644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 8373544 - 8373464
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  8373544 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 8373464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 12209099 - 12209019
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  12209099 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 12209019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 38963905 - 38963825
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  38963905 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 38963825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 40471846 - 40471766
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| |||||||||| |||| ||||| || | | |||||||||    
T  40471846 cttatatgatattatttatctttgtatattagtaaaaaaatatgatcaaaataagttaagtcaaaattgcacattttcaaa 40471766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 3037874 - 3037929
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    ||||||||||||  |||||||||| ||||||  |||||||||||||||||||||||    
T  3037874 attatttatctttgtatattagtaaaaaaatgtgatcaaaatatgttaggtcaata 3037929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 5030394 - 5030339
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgt 64  Q
    ||||||||| ||||||||||||  |||||||||| ||||||||||||||| |||||    
T  5030394 cttatatgatattatttatctttgtatattagtataaaaatacgatcaaagtatgt 5030339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 16127733 - 16127796
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  ||||||||| |||||||| ||||||| || ||||||||||    
T  16127733 cttatatgatattatttatctttgtatattagtggaaaaatatgatcaaagtaagttaggtcaa 16127796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 25277886 - 25277941
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgt 64  Q
    ||||||||| ||||||||||||  |||||||||| |||||||||||||||| ||||    
T  25277886 cttatatgatattatttatctttgtatattagtataaaaatacgatcaaaacatgt 25277941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 41436942 - 41436879
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||||||||    
T  41436942 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaa 41436879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 4137519 - 4137470
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaa 58  Q
    ||||||||| ||||||||||||  |||||||||||||||||| |||||||    
T  4137519 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaa 4137470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 8896381 - 8896300
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||| ||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | ||||||||||    
T  8896381 cttatgtgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaat 8896300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 11383998 - 11384055
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgtta 66  Q
    |||| |||| ||||||||||||  |||||||||||||||||| |||||||||| ||||    
T  11383998 cttacatgatattatttatctttatatattagtagaaaaatatgatcaaaataagtta 11384055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 16126035 - 16126116
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||| ||||||||||||  ||||||||| |||||||| | ||||| || |||||||||| || | | ||||||||||    
T  16126035 cttatatgatattatttatctttgtatattagtggaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaat 16126116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 18504582 - 18504489
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaataa-tcatctatt 101  Q
    ||||||||| |||||| |||||  |||||||||||||||||| | |||||||| |||| ||||| ||   | |||||||||||| |||||||||    
T  18504582 cttatatgatattattgatctttgtatattagtagaaaaatatggtcaaaataagttacgtcaaaattacacattttcaaataagtcatctatt 18504489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 33046199 - 33046255
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatat 75  Q
    ||||||||||||  ||||||||||||||||||  ||||||||||| ||||| |||||    
T  33046199 attatttatctttgtatattagtagaaaaatataatcaaaatatgctaggttaatat 33046255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 5861518 - 5861597
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaa 88  Q
    ||||||||| ||||||||| |   ||||||||| |||||||||| |||||  ||||||||||||||  | ||||||||||    
T  5861518 cttatatgatattatttatttgtgtatattagtggaaaaatacggtcaaagcatgttaggtcaatagtgcatattttcaa 5861597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 7601350 - 7601401
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaat 60  Q
    |||||||||  |||||||||||  ||||||||| ||||||||||||||||||    
T  7601350 cttatatgatgttatttatctttgtatattagttgaaaaatacgatcaaaat 7601401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 37806892 - 37806829
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||| | ||||||||||||  |||||||||||||||||| | | ||||||||| |||||||    
T  37806892 cttatataatattatttatctttgtatattagtagaaaaatatggttaaaatatgtcaggtcaa 37806829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 6075233 - 6075155
Alignment:
Q  11 tatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||||||||||||||  ||||||| |||||||||| | ||||| || ||||  |||| || ||| |||||||||    
T  6075233 tatatgacattatttatctttgtatattaatagaaaaatatggtcaaagtaagttaaatcaaaattgaaaattttcaaa 6075155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 22718496 - 22718578
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    ||||||||| |||||||||||   |||||||||||||||||| | ||||| || | |||||||| || | | |||||||||||    
T  22718496 cttatatgatattatttatctatatatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaattttcaaata 22718578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 27909597 - 27909539
Alignment:
Q  162 atgaattaagagtcagaaagacatcaaggagaacattagatatcccgactagatcggca 220  Q
    ||||| ||||||  |||||||||||||||||||  ||||| ||||||||||| ||||||    
T  27909597 atgaactaagagggagaaagacatcaaggagaagcttagacatcccgactaggtcggca 27909539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 41575672 - 41575590
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    ||||||||| ||||||||| |   |||||||||||||||||| ||||||| || | |||||||| || | | |||||||||||    
T  41575672 cttatatgatattatttatatatgtatattagtagaaaaatatgatcaaagtaagctaggtcaaaattgcaaattttcaaata 41575590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 43925184 - 43925102
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    |||| |||| ||||||||||||  |  ||||||||||||||| ||||||| ||||||| |||||||  | ||||| |||||||    
T  43925184 cttacatgatattatttatctttgtgaattagtagaaaaatatgatcaaagtatgttaagtcaataatgtatattatcaaata 43925102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 16333590 - 16333509
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||| ||||||||||||  ||||| ||| |||||||| | ||||| || |||||||||| || | | ||||||||||    
T  16333590 cttatatgatattatttatctttgtatatcagtggaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaat 16333509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 37987889 - 37987938
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaa 58  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| |||||||    
T  37987889 cttatatgatattatttatctttgtatattagtaaaaaaatatgatcaaa 37987938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 45036473 - 45036432
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  45036473 cttatatgatattatttatctttgtatattagtagaaaaata 45036432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 31603369 - 31603449
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||| ||  ||||||||||||||||||   ||||| || |||||||||| || | | |||||||||    
T  31603369 cttatatgatattatttatatttgtatattagtagaaaaatattgtcaaagtaagttaggtcaaaattgcacattttcaaa 31603449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 46)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 13888581 - 13888691
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||||| ||||| |||||||  ||||||  | | |||||||||||  | |||||||||||||    
T  13888581 cttatatgatattatttatctttgtatattagtagaaaaatacggtcaaagtatgttaaatcaatagcgcacattttcaaataggttatctattgtagga 13888680  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  13888681 cggagggagta 13888691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 35584125 - 35584190
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    ||||||||| ||||||||||||  ||||||| |||||||||| ||||||||||| |||||||||||    
T  35584125 cttatatgatattatttatctttgtatattaatagaaaaatatgatcaaaatatattaggtcaata 35584190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 36632143 - 36632207
Alignment:
Q  8 acttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    |||||||||| |||||||||||| ||||||||||||||||||| | |||||||| ||||| ||||    
T  36632143 acttatatgatattatttatctttttatattagtagaaaaatatggtcaaaataagttagatcaa 36632207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 7603417 - 7603354
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||| ||||||||| ||||||||||| |||||||    
T  7603417 cttatatgatattatttatctttgtatattagtataaaaatacggtcaaaatatgtcaggtcaa 7603354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 25118896 - 25118833
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||| | | |||||||||||||||||||    
T  25118896 cttatatgatattatttatctttgtatattagtagaaaaagaaggtcaaaatatgttaggtcaa 25118833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 29917879 - 29917942
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | |||||||| ||||||||||    
T  29917879 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaaataagttaggtcaa 29917942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 38842273 - 38842210
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||||| || ||||||||||    
T  38842273 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaa 38842210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 40645709 - 40645638
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||||||  |||||||||||||||||| ||||||| || |||||||||| || ||| ||||||||||    
T  40645709 attatttatctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgaaaattttcaaat 40645638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 9615633 - 9615523
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||| | ||||||||||||  |||||||||| ||||||||| ||||| |||||||| ||||||    |||||||||||||  |||| ||||||||||    
T  9615633 cttatataatattatttatctttgtatattagtaaaaaaatacggtcaaagtatgttagatcaatagtacatattttcaaataggtcatatattgtagga 9615534  T
Q  108 aggagggagta 118  Q
     ||| ||||||    
T  9615533 cggatggagta 9615523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 27301972 - 27301854
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat-aatcatctattgtagga 107  Q
    ||||||||| ||||||||||||  ||||||||||||||||||   ||||| ||  |||  |||| || |||||||||||||| | |||||||||| | ||    
T  27301972 cttatatgatattatttatctttgtatattagtagaaaaatattgtcaaagtaaattatatcaaaattgaatattttcaaatgagtcatctattgcaaga 27301873  T
Q  108 aggagggagtaataattaa 126  Q
     ||||||||||||| ||||    
T  27301872 cggagggagtaatacttaa 27301854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 44887666 - 44887776
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || || ||||||| || | | ||||||||||| ||||| |||||  |||    
T  44887666 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaactaagtcaggtcaaaattgcacattttcaaatagatcatttattgcggga 44887765  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  44887766 cggagggagta 44887776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 7431270 - 7431335
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    ||||||||| ||||||||||||  |||||||||||||||||  | |||||||||||||| ||||||    
T  7431270 cttatatgatattatttatctttgtatattagtagaaaaatgtggtcaaaatatgttagatcaata 7431335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 29616277 - 29616358
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||| ||||||||||||  |||||||||||| ||||| ||||||| || ||||| |||| ||  |||||||||||||    
T  29616277 cttatatgatattatttatctttgtatattagtagacaaatatgatcaaagtaagttagatcaaaatttaatattttcaaat 29616358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 4327070 - 4327150
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||||| || ||||| |||| || | | |||||||||    
T  4327070 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaagtaagttagatcaaaattgcacattttcaaa 4327150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 25691548 - 25691628
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  25691548 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 25691628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 30464542 - 30464462
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  30464542 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 30464462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 3466393 - 3466330
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  ||||||||||||||||||  |||||| || ||||||||||    
T  3466393 cttatatgatattatttatctttgtatattagtagaaaaataaaatcaaagtaagttaggtcaa 3466330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 17523915 - 17523804
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat-aatcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||| ||||||||| ||||||| || ||||||| || |  | | ||||||||||   |||||||||||||||    
T  17523915 cttatatgatattatttatctttgtatattagcagaaaaatatgatcaaagtaagttaggttaaaactgcacattttcaaatgggtcatctattgtagga 17523816  T
Q  108 aggagggagtaa 119  Q
     ||||| |||||    
T  17523815 gggaggaagtaa 17523804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 20671366 - 20671303
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||||||||    
T  20671366 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaa 20671303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 1156529 - 1156639
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat-aatcatctattgtagga 107  Q
    ||||||||| ||||||||| ||  ||||| |||||||||||||  ||||| |||||||| ||||||    | ||||| |||| ||||||||||| |||||    
T  1156529 cttatatgatattatttatttttatatatcagtagaaaaatacagtcaaagtatgttagatcaataatataaatttttaaataaatcatctattatagga 1156628  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  1156629 tggagggagta 1156639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 1645357 - 1645419
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtca 71  Q
    ||||||||| ||||||||| ||  |||||||||||||||||||| ||||| || |||||||||    
T  1645357 cttatatgatattatttatttttgtatattagtagaaaaatacggtcaaagtaagttaggtca 1645419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 4960261 - 4960168
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctatt 101  Q
    ||||||||| |||||||||||   |||||||||||||||||| | ||||| || | |||||||| || | | ||||||||||| ||||||||||    
T  4960261 cttatatgatattatttatctatgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaattttcaaatagatcatctatt 4960168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 8496837 - 8496918
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||| ||||||||||||  |||||| ||||||||||| | ||||| || |||||||||| || | | ||||||||||    
T  8496837 cttatatgatattatttatctttgtatattcgtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaat 8496918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 25256484 - 25256549
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    |||| |||| ||||||||||||  || ||||||||||||||| ||||||| ||||||| |||||||    
T  25256484 cttacatgatattatttatctttgtaaattagtagaaaaatatgatcaaagtatgttaagtcaata 25256549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 44039935 - 44039886
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaa 58  Q
    ||||||||| ||||||||||||  |||||||||||||||||| |||||||    
T  44039935 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaa 44039886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 11988811 - 11988739
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    |||| |||||||  ||||||||||||||| |||| ||||||||||||| |||||||  | | |||||||||||    
T  11988811 attacttatctttgtatattagtagaaaactacggtcaaaatatgttaagtcaataatgtacattttcaaata 11988739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 14378637 - 14378717
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  ||||||||||||||||||   ||||| || |||||||||| || | | |||||||||    
T  14378637 cttatatgatattatttatctttatatattagtagaaaaatatagtcaaagtaagttaggtcaaaattgcacattttcaaa 14378717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 25009254 - 25009174
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| ||  ||||||||| || | | |||||||||    
T  25009254 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaaattaggtcaaaattgcacattttcaaa 25009174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 9420714 - 9420797
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctatt 101  Q
    ||||||||||||  |||||||||| ||| | | |||||||||||||||| ||||||  | | ||||||||||| ||||||||||    
T  9420714 attatttatctttgtatattagtaaaaacacatgatcaaaatatgttagatcaataatgcacattttcaaatagatcatctatt 9420797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 10658155 - 10658234
Alignment:
Q  36 attagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtaggaaggaggg 114  Q
    ||||||||||||||| | ||||| ||||||| |||||||  | ||||| ||||||| ||||||||||| |||| ||||||    
T  10658155 attagtagaaaaatatggtcaaagtatgttaagtcaataatgtatattgtcaaatagatcatctattgaaggacggaggg 10658234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 14511950 - 14511887
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    |||||||||  |||||||||||  ||||||||| |||||||||| |||||||  ||||||||||    
T  14511950 cttatatgatgttatttatctttgtatattagttgaaaaatacggtcaaaattagttaggtcaa 14511887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 20167660 - 20167593
Alignment:
Q  36 attagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattg 102  Q
    |||||||||||||||  |||||||||||||| |||||||  | ||||| ||||||| |||||||||||    
T  20167660 attagtagaaaaatattatcaaaatatgttaagtcaatagtgtatattgtcaaatagatcatctattg 20167593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 43184730 - 43184793
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||| ||  |||||||||||||||||| | ||||| || ||||||||||    
T  43184730 cttatatgatattatttatttttgtatattagtagaaaaatatggtcaaagtaagttaggtcaa 43184793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 30653470 - 30653412
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttag 67  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||    
T  30653470 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttag 30653412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 37094242 - 37094160
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    ||||||||| |||||||||||   |||||||||||||||||| | ||||| || | |||||||| || | | |||||||||||    
T  37094242 cttatatgatattatttatctatgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaattttcaaata 37094160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 5777505 - 5777546
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  5777505 cttatatgatattatttatctttgtatattagtagaaaaata 5777546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 8058975 - 8059032
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgtta 66  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| | |||||||| ||||    
T  8058975 cttatatgatattatttatctttgtatattagtaaaaaaatatggtcaaaataagtta 8059032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 15870285 - 15870236
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaa 58  Q
    ||||||||| ||||||||| ||  |||||||||||||||||| |||||||    
T  15870285 cttatatgatattatttatttttgtatattagtagaaaaatatgatcaaa 15870236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 23437764 - 23437805
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  23437764 cttatatgatattatttatctttgtatattagtagaaaaata 23437805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 29360899 - 29360952
Alignment:
Q  21 tatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    ||||||||||  |||||||||||||||||||| |||||  ||||||||| ||||    
T  29360899 tatttatctttatatattagtagaaaaatacggtcaaagcatgttaggttaata 29360952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 42150101 - 42150150
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaa 58  Q
    |||||||||  ||||||||||| |||||||||| |||||||||| |||||    
T  42150101 cttatatgatgttatttatctttttatattagttgaaaaatacggtcaaa 42150150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 9459244 - 9459284
Alignment:
Q  10 ttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    |||||||| ||||||||||||  ||||||||||||||||||    
T  9459244 ttatatgatattatttatctttatatattagtagaaaaata 9459284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 11756888 - 11756792
Alignment:
Q  9 cttatatgacattatttatct-tct-tatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaataa-tcatctattg 102  Q
    ||||||||| ||||||||||| | | ||||||||| |||||||| | ||||| || |||||||||| || | | |||||||||||| ||||||||||    
T  11756888 cttatatgatattatttatctatgtatatattagttgaaaaatatggtcaaagtaagttaggtcaaaattgcaaattttcaaataagtcatctattg 11756792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 16345287 - 16345184
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  ||||||||||| |  ||||| | ||| ||| ||||||||||||   |||||||||||||  ||| |||||||||||    
T  16345287 cttatatgatattatttatctttatatattagtag-atcatacggttaaagtattttaggtcaatattacatattttcaaataggtcacctattgtagga 16345189  T
Q  108 aggag 112  Q
     ||||    
T  16345188 cggag 16345184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 20671256 - 20671204
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtca 71  Q
    ||||||||||||  |||||||||| ||||||||  ||||||||||| ||||||    
T  20671256 attatttatctttgtatattagtataaaaatacactcaaaatatgtcaggtca 20671204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 21132879 - 21132959
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||| ||||  |||||||||||||||||| | ||||| || |||| ||||| || | | |||||||||    
T  21132879 cttatatgatattatttttctttgtatattagtagaaaaatatggtcaaagtaagttaagtcaaaattgcacattttcaaa 21132959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 23631541 - 23631651
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||||| ||||| |||||||||| ||||    |||||||||||||  | |||||| ||||||    
T  23631541 cttatatgatattatttatctttgtatattagtagaaaaatacggtcaaagtatgttaggttaataatacatattttcaaataggttatctatcgtagga 23631640  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  23631641 cggagggagta 23631651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 53274944 - 53275026
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    ||||||||| ||||||||||||  |||||||||||||||||| |||||||||| |||||||||| || | | |||||||||||    
T  53274944 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaaataagttaggtcaaaattgcacattttcaaata 53275026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 901037 - 901153
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||||| || |||||||||| || | | ||||||||| | ||||| |||||  |||    
T  901037 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgcacattttcaaacagatcatttattgcggga 901136  T
Q  108 aggagggagtaataatt 124  Q
     ||||||||||| ||||    
T  901137 cggagggagtaaaaatt 901153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 28229005 - 28229104
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtaggaaggagggagt 117  Q
    ||||||||||||  ||||||| || ||||||||  |||||||||||||||||||||  ||| |||||||||||  ||||||||||||||| |||||||||    
T  28229005 attatttatctttgtatattaata-aaaaatacagtcaaaatatgttaggtcaatagtgaacattttcaaataggtcatctattgtaggacggagggagt 28229103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 34669718 - 34669638
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||||| || |||||||||| || | | |||||||||    
T  34669718 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgcacattttcaaa 34669638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 37166592 - 37166481
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaata-ttttcaaata-atcatctattgtagg 106  Q
    ||||||| | |||||||||||| |||||||||| |||||||||| ||||||||||||  |||||||  | ||| |||| |||||  ||||||||||||||    
T  37166592 cttatataatattatttatctttttatattagtggaaaaatacggtcaaaatatgtttcgtcaatagagcatattttttaaataggtcatctattgtagg 37166493  T
Q  107 aaggagggagta 118  Q
    | |||| |||||    
T  37166492 acggagagagta 37166481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 4229137 - 4229247
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaataa-tcatctattgtagga 107  Q
    ||||||||| |||||||||||   |||||||||| ||||||| ||||||| || | |||||||| || | | |||||||||||| |||| ||||| ||||    
T  4229137 cttatatgatattatttatctatgtatattagtaaaaaaatatgatcaaagtaagctaggtcaaaattgcaaattttcaaataagtcatttattgcagga 4229236  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  4229237 tggagggagta 4229247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 29720505 - 29720395
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  ||||||||| |||||||| ||||||| || |||||||||| || | | ||||||||| | ||||| |||||  |||    
T  29720505 cttatatgatattatttatctttatatattagtggaaaaataggatcaaagtaagttaggtcaaaattgcacattttcaaacagatcatttattgcggga 29720406  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  29720405 cggagggagta 29720395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 29793327 - 29793441
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | ||||||||| |  |||| |||||  |||    
T  29793327 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggga 29793426  T
Q  108 aggagggagtaataa 122  Q
     ||||||||||||||    
T  29793427 cggagggagtaataa 29793441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 50888454 - 50888356
Alignment:
Q  10 ttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    |||||||| ||||||||||||  |||||||| |||||||||   ||||| |||||| ||||||||  | ||||||||||||| ||||||||||| ||||    
T  50888454 ttatatgatattatttatctttgtatattagcagaaaaatatagtcaaattatgtttggtcaatagtgcatattttcaaatagatcatctattgaagga 50888356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 9484706 - 9484593
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | ||||||||| |  |||| |||||  |||    
T  9484706 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggga 9484607  T
Q  108 aggagggagtaata 121  Q
     |||||||||||||    
T  9484606 cggagggagtaata 9484593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 21271962 - 21271897
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    ||||||||| | ||||||||||| |||||||||| || |||||||||||| ||||||| |||||||    
T  21271962 cttatatgataatatttatcttcgtatattagtataacaatacgatcaaagtatgttaagtcaata 21271897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 12948150 - 12948070
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  12948150 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 12948070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 16434806 - 16434886
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| | |||||||| |||||||||| || | | |||||||||    
T  16434806 cttatatgatattatttatctttgtatattagtaaaaaaatatggtcaaaataagttaggtcaaaattgcacattttcaaa 16434886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 29455657 - 29455737
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  29455657 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 29455737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 32961357 - 32961293
Alignment:
Q  8 acttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    |||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||||||||    
T  32961357 acttatatgatattatttatctttgtatattagtagaaaaatatggtcaaactaagttaggtcaa 32961293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 38878427 - 38878479
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaata 61  Q
    ||||||||| |||||||||||| ||||||||||||||||||| | ||||||||    
T  38878427 cttatatgatattatttatctttttatattagtagaaaaatatggtcaaaata 38878479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 42098576 - 42098656
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  42098576 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 42098656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 47069506 - 47069406
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat-aatcatctattgtaggaaggagggagt 117  Q
    ||||||||||||  ||||| |||||||||||||  ||||| || |||||||||| || ||| ||||||||||   ||||||||||| ||| |||||||||    
T  47069506 attatttatctttgtatatcagtagaaaaatacagtcaaagtaggttaggtcaaaattgaaaattttcaaatgtgtcatctattgtgggacggagggagt 47069407  T
Q  118 a 118  Q
    |    
T  47069406 a 47069406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 49076375 - 49076455
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  49076375 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 49076455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 54684617 - 54684673
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgtt 65  Q
    ||||||| | ||||||||||||  |||||||||||||||||||| ||||||||||||    
T  54684617 cttatataatattatttatctttgtatattagtagaaaaatacggtcaaaatatgtt 54684673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 10819392 - 10819491
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| |||||||||||   |||||||||||||||||||   |||| |||||||||| ||||  | |||||||||||||  |||||| ||||||||    
T  10819392 cttatatgatattatttatctgtgtatattagtagaaaaatactgccaaagtatgttaggtaaatagtgcatattttcaaataggtcatctcttgtagga 10819491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 34263653 - 34263716
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||||||||    
T  34263653 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaa 34263716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 34555261 - 34555198
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||||||||    
T  34555261 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaa 34555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 36364712 - 36364775
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| |||||||||||   |||||||||||||||||| | |||||||| ||||||||||    
T  36364712 cttatatgatattatttatctatgtatattagtagaaaaatatggtcaaaataagttaggtcaa 36364775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 2643218 - 2643332
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||| ||  |||||||||||||||||| | ||||| ||   |||||||| || | | |||||||||||  ||||||||||  |||    
T  2643218 cttatatgatattatttatatttgtatattagtagaaaaatatggtcaaagtaaactaggtcaaaattgcaaattttcaaataggtcatctattgcggga 2643317  T
Q  108 aggagggagtaataa 122  Q
     ||||||||||||||    
T  2643318 cggagggagtaataa 2643332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 4945800 - 4945910
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| |||||||||||   |||||||||||||||||| | ||||| || |||||||||| || | | ||| |||||||  |||||||| || |||    
T  4945800 cttatatgatattatttatctatgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcaaattctcaaatacgtcatctatggtggga 4945899  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  4945900 cggagggagta 4945910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 28958948 - 28959042
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattg 102  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || | |||||||| || | | ||||| ||||| |||||||||||    
T  28958948 cttatatgatattatttatctttatatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaatttttaaatagatcatctattg 28959042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 48927751 - 48927861
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||||| || || | | ||||||||| | ||||| |||||  |||    
T  48927751 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtaaaaattgcacattttcaaacagatcatttattgcggga 48927850  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  48927851 cggagggagta 48927861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 52094043 - 52094137
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat-aatcatctattg 102  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||| |||| || | | |||||||||| | ||||||||||    
T  52094043 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaattaagttagatcaaaattgcaaattttcaaatgagtcatctattg 52094137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 18013419 - 18013468
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaa 58  Q
    ||||||||| ||||||||||||  |||||||||||||||||| |||||||    
T  18013419 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaa 18013468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 29809455 - 29809342
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||||||||||||||||  ||||||| |||||||||| | || || || | ||| |||| || | | |||||||||||  ||||||||||  |||    
T  29809455 cttatatgacattatttatctttgtatattaatagaaaaatatggtcgaagtaagctagatcaaaattgcaaattttcaaataggtcatctattgcggga 29809356  T
Q  108 aggagggagtaata 121  Q
     |||||||||||||    
T  29809355 cggagggagtaata 29809342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 35717955 - 35717854
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtaggaaggagggagt 117  Q
    ||||||||||||  |  ||||||||||||||| | ||||||||||||| |||||||  | ||||| |||||||  |||||||||| |||| |||||| ||    
T  35717955 attatttatctttgtgaattagtagaaaaatatggtcaaaatatgttaagtcaataatgtatattgtcaaatacgtcatctattgaaggacggagggtgt 35717856  T
Q  118 aa 119  Q
    ||    
T  35717855 aa 35717854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 36179085 - 36179134
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaa 58  Q
    ||||||||| ||||||||||||  |||||||||||||||||| |||||||    
T  36179085 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaa 36179134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 47340033 - 47340082
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaa 58  Q
    ||||||||| ||||||||||||  |||||||||||||||||| |||||||    
T  47340033 cttatatgatattatttatctttatatattagtagaaaaatatgatcaaa 47340082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 53055574 - 53055683
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa-taatcatctattgtagga 107  Q
    |||| |||| ||||||||||||  |||||||||||||||||| | |||||||  |||||||||| ||   | ||||||||| |  |||| ||||||||||    
T  53055574 cttaaatgatattatttatctttgtatattagtagaaaaatatggtcaaaattagttaggtcaaaattacacattttcaaattggtcatttattgtagga 53055673  T
Q  108 aggagggagt 117  Q
     |||||||||    
T  53055674 cggagggagt 53055683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 935140 - 935076
Alignment:
Q  10 ttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    |||||||| ||||||||||||  | |||||||||||||||| | || ||| ||||||||||||||    
T  935140 ttatatgatattatttatctttatttattagtagaaaaatatggtcgaaacatgttaggtcaata 935076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 36594367 - 36594431
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtag-aaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  ||||||| ||| ||||||| |||||||||| ||||||||||    
T  36594367 cttatatgatattatttatctttatatattaatagaaaaaatatgatcaaaataagttaggtcaa 36594431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 43370391 - 43370319
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    ||||||||||||  |||||||||| ||||||||||||||| || |||| ||||| || | | |||||||||||    
T  43370391 attatttatctttgtatattagtataaaaatacgatcaaagtaagttatgtcaaaattgcacattttcaaata 43370319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 46866453 - 46866373
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    ||||||| |||||||||| || | | |||||||||    
T  46866453 cttatatgatattatttatctttgtatattagtagaaaaatattgccaaaataagttaggtcaaaattgcacattttcaaa 46866373  T

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Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 50673787 - 50673707
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||| ||||| || | | |||||||||    
T  50673787 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaagtcaaaattgcacattttcaaa 50673707  T

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Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 21490018 - 21489963
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    ||||||||||||  ||||||| || ||||||||| ||||| |||||||||||||||    
T  21490018 attatttatctttgtatattaataaaaaaatacggtcaaagtatgttaggtcaata 21489963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 26759589 - 26759526
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| |||||||||||   |||||||||||||||||| | ||||| || ||||||||||    
T  26759589 cttatatgatattatttatctatgtatattagtagaaaaatatggtcaaagtaagttaggtcaa 26759526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 45093897 - 45093936
Alignment:
Q  36 attagtagaaaaatacgatcaaaatatgttaggtcaatat 75  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  45093897 attagtagaaaaatatgatcaaaatatgttaagtcaatat 45093936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 1325498 - 1325556
Alignment:
Q  11 tatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggt 69  Q
    ||||||| ||||||||||||  ||||||||||||||||||  |||||| || |||||||    
T  1325498 tatatgatattatttatctttatatattagtagaaaaatataatcaaagtaagttaggt 1325556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 1778471 - 1778357
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| |||||||||||   |||||||||||||||||| | ||||| || | || ||||| || | | |||||||||||  ||||||||||  |||    
T  1778471 cttatatgatattatttatctatgtatattagtagaaaaatatggtcaaagtaagctaagtcaaaattgcaaattttcaaataggtcatctattgcggga 1778372  T
Q  108 aggagggagtaataa 122  Q
     ||||| ||||||||    
T  1778371 cggaggaagtaataa 1778357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 4464991 - 4464881
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| |||||||||||   || ||||||||||||||| ||||||| ||   ||||| || || | | ||||||||||| |||||||||||  |||    
T  4464991 cttatatgatattatttatctatgtacattagtagaaaaatatgatcaaagtaaactaggttaacattgcaaattttcaaatagatcatctattgcggga 4464892  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  4464891 cggagggagta 4464881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 43394507 - 43394565
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttag 67  Q
    ||||||||| ||||||||||||  | |||||||||||||||| | |||||||| |||||    
T  43394507 cttatatgatattatttatctttgtttattagtagaaaaatatggtcaaaataagttag 43394565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 5030089 - 5029988
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtaggaa-ggagggag 116  Q
    ||||||||||||  ||||||||||||||| |||| ||||| ||| ||| |||||||  | | ||||| |||||  ||||||||||||| || ||||||||    
T  5030089 attatttatctttgtatattagtagaaaagtacggtcaaagtatattaagtcaataatgcacatttttaaataggtcatctattgtagaaacggagggag 5029990  T
Q  117 ta 118  Q
    ||    
T  5029989 ta 5029988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 38833924 - 38833977
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||||||  |||||||||||||||||| | ||||| || ||||||||||    
T  38833924 attatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaa 38833977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 42247222 - 42247157
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    |||||| || ||||||||||||  ||| |||||||||||||| | ||||||||| ||| |||||||    
T  42247222 cttataagatattatttatctttatattttagtagaaaaatatggtcaaaatatattacgtcaata 42247157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 48143914 - 48143979
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    |||| |||| ||||||||||||  || ||||||||||||||| | ||||||||| ||| |||||||    
T  48143914 cttacatgatattatttatctttgtaaattagtagaaaaatatggtcaaaatatattatgtcaata 48143979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 48690204 - 48690245
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  48690204 cttatatgatattatttatctttgtatattagtagaaaaata 48690245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 15503184 - 15503268
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattg 102  Q
    ||||||| |||| ||| ||||||||||||||| ||||||| ||| ||| |||||||  | ||||| |||| || |||||||||||    
T  15503184 attatttttctttttaaattagtagaaaaataagatcaaagtatattaagtcaataatgtatattatcaactagatcatctattg 15503268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 8048706 - 8048819
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| |||||||||||   |||||||||||||||||| | |||||||| | |||||||| || | | |||||||||||  |||||||||| ||||    
T  8048706 cttatatgatattatttatctatgtatattagtagaaaaatatggtcaaaataagctaggtcaaaattgcaaattttcaaataggtcatctattgcagga 8048805  T
Q  108 aggagggagtaata 121  Q
     |||||||||||||    
T  8048806 cggagggagtaata 8048819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 48312138 - 48312045
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaataatcatctattg 102  Q
    ||||||| | ||||||||||||  ||||||||||||||||||||||||||||| |||| | ||| || | | ||||||||||  ||||||||||    
T  48312138 cttatataatattatttatctttgtatattagtagaaaaatacgatcaaaataagttaagccaaaattgcacattttcaaatggtcatctattg 48312045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 2612034 - 2612098
Alignment:
Q  10 ttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    |||||| | |||||||||||| ||||||||||| ||||||||  |||||||||||||||||||||    
T  2612034 ttatattatattatttatctttttatattagtaaaaaaatacagtcaaaatatgttaggtcaata 2612098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 27462848 - 27462746
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  ||||||||||||| | |||| |  ||||||||||||||||||  | |||||||||||||  |||||||| ||||||    
T  27462848 cttatatgatattatttatcttggtatattagtagaatattacggt--aaatatgttaggtcaatagtgcatattttcaaataggtcatctatcgtagga 27462751  T
Q  108 aggag 112  Q
     ||||    
T  27462750 cggag 27462746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 38737474 - 38737377
Alignment:
Q  23 tttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtaggaaggagggagtaa 119  Q
    ||||||||  ||||||||||||||||||| ||||||  |||||| ||||||||   | ||| ||||||| |||||||||||| ||| |||||||||||    
T  38737474 tttatctttatatattagtagaaaaatacaatcaaagaatgttaagtcaatattatacattgtcaaatagatcatctattgtgggacggagggagtaa 38737377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 48897029 - 48896964
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    ||||||||| ||||||||| ||  |||||||||||||||||| | ||||||||| |||||||||||    
T  48897029 cttatatgatattatttatgtttatatattagtagaaaaatatggtcaaaatattttaggtcaata 48896964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 10100471 - 10100551
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  10100471 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 10100551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 52749391 - 52749331
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggt 69  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | |||||||| |||||||    
T  52749391 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaaataagttaggt 52749331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 2138987 - 2139046
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttagg 68  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||||| || ||||||    
T  2138987 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaagtaagttagg 2139046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 23337917 - 23337854
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||||||||    
T  23337917 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaactaagttaggtcaa 23337854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 43453123 - 43453186
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  ||||||| |||||||||| | |||||||| ||||||||||    
T  43453123 cttatatgatattatttatctttgtatattaatagaaaaatatggtcaaaataagttaggtcaa 43453186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 44741453 - 44741390
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | |||||||| ||||| ||||    
T  44741453 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaaataagttagatcaa 44741390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 49903643 - 49903706
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||||| ||  |||||||||    
T  49903643 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaagtaaattaggtcaa 49903706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 31932136 - 31932246
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||| ||  |||||||||||||||||| | ||||| ||   |||||||| || | | ||||||||||| |||||||||||  |||    
T  31932136 cttatatgatattatttatatttgtatattagtagaaaaatatggtcaaagtaaactaggtcaaaattgcaaattttcaaatagatcatctattgcggga 31932235  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  31932236 cggagggagta 31932246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 51924928 - 51924994
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaa-tacgatcaaaatatgttaggtcaata 74  Q
    ||||||||| ||||||||||||  |||||| ||| ||||| |||| |||||||||||||||||||||    
T  51924928 cttatatgatattatttatctttgtatattggtaaaaaaaatacggtcaaaatatgttaggtcaata 51924994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 1821586 - 1821699
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  ||||||| | |||||||| | ||||| || |||||||||| || | | |||||||||||   |||||||||  |||    
T  1821586 cttatatgatattatttatctttgtatattaatggaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaataggccatctattgccgga 1821685  T
Q  108 aggagggagtaata 121  Q
     |||||||||||||    
T  1821686 cggagggagtaata 1821699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 27581039 - 27581120
Alignment:
Q  21 tatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat-aatcatctatt 101  Q
    ||||||||||  ||||||| |||||||||| ||||||| ||||||||||||| ||   ||||| |||||| |||||||||||    
T  27581039 tatttatctttgtatattattagaaaaatatgatcaaagtatgttaggtcaaaattacatattgtcaaataaatcatctatt 27581120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 31971497 - 31971440
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgtta 66  Q
    ||||||||| ||||||||||||  |  ||||||||||||||| |||||||||||||||    
T  31971497 cttatatgatattatttatctttgttaattagtagaaaaatatgatcaaaatatgtta 31971440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 38786904 - 38786985
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||| ||||||||||||  ||||||||| |||||||| ||||||| || ||||  |||| || | ||||||||||||    
T  38786904 cttatatgatattatttatctttgtatattagttgaaaaatatgatcaaagtaagttatatcaaaattgcatattttcaaat 38786985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 6017407 - 6017487
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||| |||| || | | |||||||||    
T  6017407 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttagatcaaaattgcacattttcaaa 6017487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 10124219 - 10124139
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||| | ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  10124219 cttatataatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 10124139  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 26543978 - 26543898
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||| | ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  26543978 cttatataatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgtacattttcaaa 26543898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 32968223 - 32968143
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||| ||||||||  ||||||||||| || |||| || | ||||| |||||    
T  32968223 cttatatgatattatttatctttgtatattagtataaaaatacagtcaaaatatgtcagttcaaaattgtatattgtcaaa 32968143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 36035795 - 36035747
Alignment:
Q  10 ttatatgacattatttatcttcttatattagtagaaaaatacgatcaaa 58  Q
    |||||||| ||||||||||||  |||||||||||||||||| |||||||    
T  36035795 ttatatgatattatttatctttgtatattagtagaaaaatatgatcaaa 36035747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 41414311 - 41414203
Alignment:
Q  11 tatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtaggaag 109  Q
    ||||||| |||||||||||   |||||||||||||||||| | ||||| || | |||||||| || | | |||||||||||  | |||||||| |||| |    
T  41414311 tatatgatattatttatctatgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaattttcaaataggtaatctattgcaggacg 41414212  T
Q  110 gagggagta 118  Q
    |||||||||    
T  41414211 gagggagta 41414203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 45299428 - 45299348
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| | ||||| || |||||||||| || | | |||||||||    
T  45299428 cttatatgatattatttatctttgtatattagtataaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 45299348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 47912391 - 47912339
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaata 61  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||||||    
T  47912391 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaaata 47912339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 52688641 - 52688546
Alignment:
Q  9 cttatatgacattatttatcttcttatatta--gtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaataatcatctattg 102  Q
    ||||||||| ||||||||||||  |||||||  ||||||||||||  ||||| || |||||||||| ||   | |||||||||| |||||||||||    
T  52688641 cttatatgatattatttatctttgtatattatagtagaaaaatacagtcaaagtaagttaggtcaaaattccacattttcaaatgatcatctattg 52688546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 7075288 - 7075351
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||| ||||    
T  7075288 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttagatcaa 7075351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 44963630 - 44963693
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    |||||||||  |||||||||||  ||||||||| |||||||||| |||||||  ||||||||||    
T  44963630 cttatatgatgttatttatctttgtatattagttgaaaaatacggtcaaaatcagttaggtcaa 44963693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 27990814 - 27990760
Alignment:
Q  20 ttatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    |||||||| ||  |||||||||||||||||| | ||||| |||||||||||||||    
T  27990814 ttatttatttttgtatattagtagaaaaatatggtcaaagtatgttaggtcaata 27990760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 32495199 - 32495253
Alignment:
Q  13 tatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttag 67  Q
    ||||| ||||||||||||  ||||||||| |||||||| | ||||||||||||||    
T  32495199 tatgatattatttatctttgtatattagtcgaaaaatatggtcaaaatatgttag 32495253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 41855679 - 41855761
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    ||||||||| |||||||||||   |||||||||||||||||| | ||||| || | |||||||| || | | |||||||||||    
T  41855679 cttatatgatattatttatctatgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaattttcaaata 41855761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 48389176 - 48389094
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata 91  Q
    ||||||||| |||||||||||   |||||||||||||||||| | ||||| || | |||||||| || | | |||||||||||    
T  48389176 cttatatgatattatttatctatgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaattttcaaata 48389094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 5606349 - 5606390
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  5606349 cttatatgatattatttatctttgtatattagtagaaaaata 5606390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 5945875 - 5945834
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  5945875 cttatatgatattatttatctttgtatattagtagaaaaata 5945834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 31651859 - 31651900
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  31651859 cttatatgatattatttatctttgtatattagtagaaaaata 31651900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 15443412 - 15443456
Alignment:
Q  22 atttatcttcttatattagtagaaaaatacgatcaaaatatgtta 66  Q
    |||||||||  |||||||||||||||||| |||||||| ||||||    
T  15443412 atttatctttatatattagtagaaaaatatgatcaaaacatgtta 15443456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 50014519 - 50014611
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaataa-tcatctat 100  Q
    ||||||||| |||||||||||   |||||||||||||||||| | ||||| || | ||| |||| || | | |||||||||||| ||||||||    
T  50014519 cttatatgatattatttatctatgtatattagtagaaaaatatggtcaaagtaagctagatcaaaattgcaaattttcaaataagtcatctat 50014611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 9022950 - 9022838
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||| ||  |||||||||||||||||| | ||||| ||||||||||||| || | ||||||||||| |  |||| ||||| ||||    
T  9022950 cttatatgatattatttatttttgtatattagtagaaaaatatggtcaaagtatgttaggtcaaaattgcatattttcaaacaggtcatttattgcagga 9022851  T
Q  108 aggagggagtaat 120  Q
     ||||||||||||    
T  9022850 cggagggagtaat 9022838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 31709003 - 31708893
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||||| ||||| ||  ||| ||||| || | | ||||| ||||| ||||||||||| ||||    
T  31709003 cttatatgatattatttatctttgtatattagtagaaaaatacggtcaaagtaaattaagtcaaaattgcacatttttaaatagatcatctattgcagga 31708904  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  31708903 cggagggagta 31708893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 2141678 - 2141598
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||||| || |||||||||| || | | |||||||||    
T  2141678 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgtacattttcaaa 2141598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 6142465 - 6142545
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||||| || |||||||||| || | | |||||||||    
T  6142465 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgcacattttcaaa 6142545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 29514984 - 29515064
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||||| || |||||||||| || | | |||||||||    
T  29514984 cttatatgatattatttatctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgcacattttcaaa 29515064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 16661560 - 16661623
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||||| ||||| || ||||||||||    
T  16661560 cttatatgatattatttatctttatatattagtagaaaaatacggtcaaagtaagttaggtcaa 16661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 24798504 - 24798618
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | ||||||||| |  |||| |||||  |||    
T  24798504 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggga 24798603  T
Q  108 aggagggagtaataa 122  Q
     ||||||||||||||    
T  24798604 cggagggagtaataa 24798618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 4890084 - 4890196
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat-aatcatctattgtagga 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| ||  ||||||||| || | | ||||| ||||  ||||||||||| | ||    
T  4890084 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaaattaggtcaaaattgcacatttttaaatggatcatctattgcatga 4890183  T
Q  108 aggagggagtaat 120  Q
     ||||||||||||    
T  4890184 cggagggagtaat 4890196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 16120833 - 16120889
Alignment:
Q  10 ttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgtta 66  Q
    |||||||| ||||||||||||  |||||||||| ||||||||| |||||||||||||    
T  16120833 ttatatgatattatttatctttgtatattagtaaaaaaatacggtcaaaatatgtta 16120889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 17417672 - 17417752
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||| ||| |||||| |||||| || | ||||| |||||    
T  17417672 cttatatgatattatttatctttgtatattagtagaaaaatatgattaaattatgtttggtcaaaattgcatattgtcaaa 17417752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 24825275 - 24825195
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  24825275 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 24825195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 32541435 - 32541515
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| ||  ||||||||| || | |||||||||||    
T  32541435 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaaattaggtcaaaattgcatattttcaaa 32541515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 30699371 - 30699308
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || ||||||||||    
T  30699371 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaa 30699308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 17496281 - 17496386
Alignment:
Q  14 atgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtaggaaggag 112  Q
    |||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | ||||||||| | ||||| |||||  ||| ||||    
T  17496281 atgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaacagatcatttattgcgggacggag 17496380  T
Q  113 ggagta 118  Q
    ||||||    
T  17496381 ggagta 17496386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 24693248 - 24693195
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatat 62  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | |||||||||    
T  24693248 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaaatat 24693195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 2397880 - 2397800
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| ||  ||||||||| || | | |||||||||    
T  2397880 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaaattaggtcaaaattgcacattttcaaa 2397800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 2656628 - 2656708
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  ||||||||||||||||||   ||||| || |||||||||| || | | |||||||||    
T  2656628 cttatatgatattatttatctttgtatattagtagaaaaatatagtcaaagtaagttaggtcaaaattgcacattttcaaa 2656708  T

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Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 6188614 - 6188694
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| | ||||| || |||||||||| || | | |||||||||    
T  6188614 cttatatgatattatttatctttatatattagtaaaaaaatatgctcaaagtaagttaggtcaaaattgcacattttcaaa 6188694  T

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Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 10105921 - 10105858
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | | |||||| |||| |||||    
T  10105921 cttatatgatattatttatctttatatattagtagaaaaatatggttaaaataagttaagtcaa 10105858  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 2667283 - 2667393
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtagga 107  Q
    ||||||||| ||||||||||||  | ||||||||||||||||   ||||| || |||||||||| || | | ||||||||| | ||||| |||||  |||    
T  2667283 cttatatgatattatttatctttgtttattagtagaaaaatatagtcaaagtaagttaggtcaaaattgcacattttcaaacagatcatttattgcggga 2667382  T
Q  108 aggagggagta 118  Q
     ||||||||||    
T  2667383 cggagggagta 2667393  T

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Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 12869373 - 12869427
Alignment:
Q  10 ttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgt 64  Q
    |||||||| ||||||||||||  |||||||||||||||||| | ||||| |||||    
T  12869373 ttatatgatattatttatctttgtatattagtagaaaaatatggtcaaactatgt 12869427  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 995673 - 995632
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaata 50  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  995673 cttatatgatattatttatctttgtatattagtagaaaaata 995632  T

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Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 3686951 - 3686992
Alignment:
Q  33 tatattagtagaaaaatacgatcaaaatatgttaggtcaata 74  Q
    ||||||| |||||||||| ||||||| |||||||||||||||    
T  3686951 tatattaatagaaaaatatgatcaaagtatgttaggtcaata 3686992  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 17179356 - 17179447
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaataa-tcatctatt 101  Q
    ||||||| | ||||||||||||  ||||||||||| |||||||  ||||||||||||  |||||||  | |||||||||||||| |||||||||    
T  17179356 cttatataatattatttatctttgtatattagtag-aaaatacagtcaaaatatgtt-tgtcaatagtgtatattttcaaataagtcatctatt 17179447  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 32673858 - 32673765
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctatt 101  Q
    ||||||||| ||||||| |||   |||||||||||||||||| | |||||||| ||||| |||| || | | ||||| ||||| ||||||||||    
T  32673858 cttatatgatattatttctctatgtatattagtagaaaaatatggtcaaaataagttagatcaaaattgcaaatttttaaatagatcatctatt 32673765  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 2555351 - 2555295
Alignment:
Q  10 ttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgtta 66  Q
    |||||| | |||||||||||| |||||||||||  |||||||  |||||||||||||    
T  2555351 ttatataatattatttatctttttatattagtaagaaaatacagtcaaaatatgtta 2555295  T

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Target: scaffold0500 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 629 - 710
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | ||||||||||||    
T  629 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaactaagttaggtcaaaattgcatattttcaaat 710  T

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Target: scaffold0687 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 1099 - 1036
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaa 72  Q
    ||||||||| ||||||||||||  |||||||||| ||||||||| ||||||||||| |||||||    
T  1099 cttatatgatattatttatctttgtatattagtataaaaatacggtcaaaatatgtcaggtcaa 1036  T

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Target: scaffold0069 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 4552 - 4441
Alignment:
Q  8 acttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat-aatcatctattgtagg 106  Q
    |||||||| | ||||||||||||   ||||||||||||||||||| |||||||| |||||||||| || | | ||||| |||| |||||| ||||| |||    
T  4552 acttatataatattatttatctttgcatattagtagaaaaatacggtcaaaataagttaggtcaaaattgcacatttttaaatgaatcatttattgcagg 4453  T
Q  107 aaggagggagta 118  Q
    | ||| ||||||    
T  4452 acggaaggagta 4441  T

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Target: scaffold0221 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 5486 - 5406
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  5486 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 5406  T

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Target: scaffold0204 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 23915 - 23984
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaat 90  Q
    ||||||||||||  |||||||||||||||||||||||||| || |||||||||| || | | ||||||||||    
T  23915 attatttatctt--tatattagtagaaaaatacgatcaaagtaagttaggtcaaaattgcacattttcaaat 23984  T

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Target: scaffold0204; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 24164 - 24264
Alignment:
Q  19 attatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaata-atcatctattgtaggaaggagggagt 117  Q
    ||||| ||||||  |||||||||||||||||||| ||||||||||||| |||||||  | | ||||| |||||  ||||||||| || || |||||||||    
T  24164 attatctatctttgtatattagtagaaaaatacggtcaaaatatgttaagtcaatagtgcacatttttaaataggtcatctattataagacggagggagt 24263  T
Q  118 a 118  Q
    |    
T  24264 a 24264  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 184076 - 183996
Alignment:
Q  9 cttatatgacattatttatcttcttatattagtagaaaaatacgatcaaaatatgttaggtcaatatggaatattttcaaa 89  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||| || |||||||||| || | | |||||||||    
T  184076 cttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 183996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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