View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5934-Insertion-2 (Length: 1129)
Name: NF5934-Insertion-2
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5934-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 25 - 385
Target Start/End: Original strand, 26877060 - 26877419
Alignment:
| Q |
25 |
cttagcataaacgtgtttgaaaagaagtcccaattggttggaacatgattaataaatttgattctaagatgaaagtgaaatgctacttatctaatcgtta |
124 |
Q |
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| T |
26877060 |
cttagcataaacgtgtttgaaaagaagtcccaattggttggaacatgattaataaatttgattctaagatgaaagtgaaatgctacttatctaatcgtta |
26877159 |
T |
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| Q |
125 |
ttgtccaagtgtgatgagaataattctggaatttgaagcactaaattaaacgaaatagcaggcaaaccaatgagagagcatgtatatggggcaatgacat |
224 |
Q |
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| T |
26877160 |
ttgtccaagtgtgatgagaataattctggaatttgaagcactaaattaaacgaaatagcaggcaaaccaatgagagagcatgtatatggggcaatgacat |
26877259 |
T |
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| Q |
225 |
atgcttgatgatgaatgatgactacaccacacaaagggtcttaatcacttttgcatatagcaaagacaaaagttgttaatgattaagcattttatttccc |
324 |
Q |
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| T |
26877260 |
atgcttgatgatgaatgatgactacaccacacaaagggtcttaatcacttttgcatatagcaaagacaaaagttgttaatgattaagcatttaattt-gc |
26877358 |
T |
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| Q |
325 |
aaaaagcaatgcacaatgttttgttgacatgttttaaccgttagccagggagtttctccaa |
385 |
Q |
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| T |
26877359 |
aaaaagcaatgcacaatgttttgttgacatgttttaaccgttagccagggagtttctccaa |
26877419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 864 - 990
Target Start/End: Original strand, 26878161 - 26878289
Alignment:
| Q |
864 |
ggagaagttaaacgtatattcttagacatacaagctctaaaaatatcata-aatacgagtctctaaactaatag-tcctcaaactagcaaattccttgaa |
961 |
Q |
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| T |
26878161 |
ggagaagttaaacgtatattcttagacatacaagctctaaaaatatcatagaatacgagtctctaaattaatagttcccaaaactagcaaattccttgaa |
26878260 |
T |
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| Q |
962 |
tccaaggagaggctaaagtttgatagtcg |
990 |
Q |
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| T |
26878261 |
tccaaggagaggctaaagtttgatagtcg |
26878289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 612 - 781
Target Start/End: Original strand, 26877515 - 26877677
Alignment:
| Q |
612 |
gaattaacaagttcctatgtaaattttgatgttttaggtgacacaatttcatgacttcttgtggtctaagagtggtactaatttagcttattcnnnnnnn |
711 |
Q |
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| T |
26877515 |
gaattaacaagttcctatgtaaattttgatgctttaggtgacacactttcatgacttgttgtggtctaagagtggtactaatttagcttatt-------a |
26877607 |
T |
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| Q |
712 |
nnnnnnnnnntctaattctagttattttttaaaattgttgggcatagactttcatataacatataaataa |
781 |
Q |
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| T |
26877608 |
aaaaaaaaaaactaattctagttatttttgaaaattgctgggcatagactttcatataacatataaataa |
26877677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 510 - 553
Target Start/End: Original strand, 26877417 - 26877462
Alignment:
| Q |
510 |
caaatcatcttagagtttc--atacacttgttttatactactagta |
553 |
Q |
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| T |
26877417 |
caaatcatcttagagtttcatatatacttgttttatactactagta |
26877462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1055 - 1123
Target Start/End: Complemental strand, 33150744 - 33150675
Alignment:
| Q |
1055 |
atgaacgtaataatagaattctataataacatccag-ccaacgttgaacaactagccgat-aagtaagatt |
1123 |
Q |
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| T |
33150744 |
atgaacgtaataatagact-ctataataacatccaaaccaccgttgaacaactagcagataaagtaagatt |
33150675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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