View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5934-Insertion-4 (Length: 1100)

Name: NF5934-Insertion-4
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5934-Insertion-4
NF5934-Insertion-4
[»] chr6 (19 HSPs)
chr6 (9-370)||(28328695-28329057)
chr6 (9-370)||(28506331-28506693)
chr6 (482-713)||(28329145-28329376)
chr6 (482-713)||(28506781-28507012)
chr6 (778-916)||(28247205-28247349)
chr6 (678-775)||(28247487-28247584)
chr6 (678-911)||(28192131-28192361)
chr6 (249-370)||(28191736-28191857)
chr6 (249-370)||(28525555-28525676)
chr6 (249-370)||(28239710-28239831)
chr6 (249-370)||(28246700-28246821)
chr6 (591-685)||(28247024-28247119)
chr6 (9-68)||(28239481-28239540)
chr6 (9-74)||(28246459-28246524)
chr6 (678-731)||(28247346-28247399)
chr6 (9-68)||(28191504-28191563)
chr6 (52-94)||(28223878-28223920)
chr6 (499-544)||(28239921-28239966)
chr6 (9-68)||(28525329-28525388)
[»] scaffold0038 (10 HSPs)
scaffold0038 (778-916)||(47367-47511)
scaffold0038 (678-775)||(47649-47746)
scaffold0038 (249-370)||(39872-39993)
scaffold0038 (249-370)||(46862-46983)
scaffold0038 (591-685)||(47186-47281)
scaffold0038 (9-68)||(39643-39702)
scaffold0038 (9-74)||(46621-46686)
scaffold0038 (678-731)||(47508-47561)
scaffold0038 (52-94)||(24376-24418)
scaffold0038 (499-544)||(40083-40128)
[»] scaffold0019 (4 HSPs)
scaffold0019 (249-370)||(54950-55071)
scaffold0019 (9-78)||(55240-55309)
scaffold0019 (607-685)||(54688-54767)
scaffold0019 (499-544)||(54785-54830)


Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 9 - 370
Target Start/End: Original strand, 28328695 - 28329057
Alignment:
Q  9 ctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaatcagttgatacaaccagtaatgattttgatttacataagacaagtcc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28328695 ctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaatcagttgatacaaccagtaatgattttgatttacataagacaagtcc 28328794  T
Q  109 cactctgatcatccatggcaacaaatatgatctttata-tctcctgactaagtttggtaaaatgtggactcatcatacatatttgtatgatatgaagctg 207  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28328795 cactctgatcatccatggcaacaaatatgatctttatattctcctgactaagtttggtaaaatgtggactcatcatacatatttgtatgatatgaagctg 28328894  T
Q  208 gaatttaagccaaactacaacatgggcggaannnnnnnagtaaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacag 307  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28328895 gaatttaagccaaactacaacatgggcggaatttttttagtaaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacag 28328994  T
Q  308 aatttggaatccatcttttcaaacagaaaaataacatggaggacattaaattcaccgatcctt 370  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28328995 aatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatcctt 28329057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 9 - 370
Target Start/End: Original strand, 28506331 - 28506693
Alignment:
Q  9 ctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaatcagttgatacaaccagtaatgattttgatttacataagacaagtcc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28506331 ctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaatcagttgatacaaccagtaatgattttgatttacataagacaagtcc 28506430  T
Q  109 cactctgatcatccatggcaacaaatatgatctttata-tctcctgactaagtttggtaaaatgtggactcatcatacatatttgtatgatatgaagctg 207  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28506431 cactctgatcatccatggcaacaaatatgatctttatattctcctgactaagtttggtaaaatgtggactcatcatacatatttgtatgatatgaagctg 28506530  T
Q  208 gaatttaagccaaactacaacatgggcggaannnnnnnagtaaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacag 307  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28506531 gaatttaagccaaactacaacatgggcggaatttttttagtaaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacag 28506630  T
Q  308 aatttggaatccatcttttcaaacagaaaaataacatggaggacattaaattcaccgatcctt 370  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28506631 aatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatcctt 28506693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 482 - 713
Target Start/End: Original strand, 28329145 - 28329376
Alignment:
Q  482 atggaggatattgaattcaccattcataatagttccggccaatcacaagaccacccgttggtgtataaacggtcatgtgtgattttcatttcttccgacg 581  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||    
T  28329145 atggaggatattgaattcaccattcacaatagttccggccaatcacaagaccacccgttggtgtataaatggtcatgtgcgattttcatttcttccaacg 28329244  T
Q  582 tcaacaatgcattcattggatgatattgtgaatgatgaattcaatgaccaccgtgtggacacagatatgtaaatatgtaattccaattctgtgtgcttat 681  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28329245 tcaacaatgcattcattggatgatattgtgaatgatgaattcaatgaccaccgtgtcgacacagatatgtaaatatgtaattccaattctgtgtgcttat 28329344  T
Q  682 ttatgttcttcaaatgatcgctctctccactt 713  Q
    |||||||||||||||||| |||||||||||||    
T  28329345 ttatgttcttcaaatgattgctctctccactt 28329376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 482 - 713
Target Start/End: Original strand, 28506781 - 28507012
Alignment:
Q  482 atggaggatattgaattcaccattcataatagttccggccaatcacaagaccacccgttggtgtataaacggtcatgtgtgattttcatttcttccgacg 581  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||    
T  28506781 atggaggatattgaattcaccattcacaatagttccggccaatcacaagaccacccgttggtgtataaatggtcatgtgcgattttcatttcttccaacg 28506880  T
Q  582 tcaacaatgcattcattggatgatattgtgaatgatgaattcaatgaccaccgtgtggacacagatatgtaaatatgtaattccaattctgtgtgcttat 681  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28506881 tcaacaatgcattcattggatgatattgtgaatgatgaattcaatgaccaccgtgtcgacacagatatgtaaatatgtaattccaattctgtgtgcttat 28506980  T
Q  682 ttatgttcttcaaatgatcgctctctccactt 713  Q
    |||||||||||||||||| |||||||||||||    
T  28506981 ttatgttcttcaaatgattgctctctccactt 28507012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 778 - 916
Target Start/End: Complemental strand, 28247349 - 28247205
Alignment:
Q  778 ttgctatccctcgaagattgagtgggaaaatgtagtattatagaattatacttgtcatttctgtggttagcccccattggtgttgtgtaccga------c 871  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |      |    
T  28247349 ttgctatccctcgaagattgagtggaaaaatgtagtattatagaattatacttgtcatttctatggttagcccccattggtgttgtgtactaagaagtgc 28247250  T
Q  872 acataatatgtttaaattgtcttatttgagtttatctaattatat 916  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  28247249 acataatctgtttaaattgtcttatttgagtttatctaattatat 28247205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 678 - 775
Target Start/End: Complemental strand, 28247584 - 28247487
Alignment:
Q  678 ttatttatgttcttcaaatgatcgctctctccactttgagtgatgatctgttgcatgatatgaaatacttctgaattatagttttcattacatacata 775  Q
    |||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28247584 ttatttatgttctttaaatgattgctctctccactttgagttatgatctgttgcatgatatgaaatatttctgaattatagttttcattacatacata 28247487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 678 - 911
Target Start/End: Original strand, 28192131 - 28192361
Alignment:
Q  678 ttatttatgttcttcaaatgatcgctctctccactttgagtgatgatctgttgcatgatatgaaatacttctgaattatagttttcattacatacataga 777  Q
    |||||||||||||||||| ||| ||||||||||||  |||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||    |    
T  28192131 ttatttatgttcttcaaaagattgctctctccact--gagttattatctgttgcataatatgcaatacttctgaattatagttttcattacatac----a 28192224  T
Q  778 ttgctatccctcgaagattgagtgggaaaatgtagtattatagaattatacttgtcatttctgtggttagcccccattggtgttgtgtaccga------c 871  Q
    ||||||||||| || |||||||| | |||||||||||| ||||  |  |||||||||| ||| ||||||| | ||||| ||||||||||| ||      |    
T  28192225 ttgctatcccttgacgattgagtagaaaaatgtagtatgatag--tgttacttgtcatctctatggttag-cgccattagtgttgtgtactgagaagttc 28192321  T
Q  872 acataatatgtttaaattgtcttatttgagtttatctaat 911  Q
    ||| |||  | ||||||||||||||||||| |||||||||    
T  28192322 acacaatccgattaaattgtcttatttgaggttatctaat 28192361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 249 - 370
Target Start/End: Original strand, 28191736 - 28191857
Alignment:
Q  249 aaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccatcttttcaaacagaaaaataacatggag 348  Q
    ||||||||||| |||||||||||||| ||  ||||||| | | || ||||||||||||||| ||||||||||| |||||||||||||||||||||||||     
T  28191736 aaatgaatggaatcatgcagaggttacatatgaacatccgagagtggaaccactaacagaaattggaatccattttttcaaacagaaaaataacatggat 28191835  T
Q  349 gacattaaattcaccgatcctt 370  Q
    || ||| |||||||||||||||    
T  28191836 gatattcaattcaccgatcctt 28191857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 249 - 370
Target Start/End: Original strand, 28525555 - 28525676
Alignment:
Q  249 aaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccatcttttcaaacagaaaaataacatggag 348  Q
    |||||| |||| |||||||||| ||| ||| ||||||| |   || |||||| |||||||| ||||||||||| |||||||||||||||||||||||||     
T  28525555 aaatgactggaatcatgcagagattatatgtgaacatcagttagtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacatggat 28525654  T
Q  349 gacattaaattcaccgatcctt 370  Q
    || ||| |||||||| ||||||    
T  28525655 gatattcaattcaccaatcctt 28525676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 249 - 370
Target Start/End: Original strand, 28239710 - 28239831
Alignment:
Q  249 aaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccatcttttcaaacagaaaaataacatggag 348  Q
    ||||||||||| |||||||||||||| ||  ||||||      || ||||||||||||||| ||||||||||| ||||||||||  |||||||||||||     
T  28239710 aaatgaatggaatcatgcagaggttatatttgaacattcaaatgtggaaccactaacagaaattggaatccattttttcaaacacgaaaataacatggat 28239809  T
Q  349 gacattaaattcaccgatcctt 370  Q
    |||||| |||||||| ||||||    
T  28239810 gacattcaattcaccaatcctt 28239831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 249 - 370
Target Start/End: Original strand, 28246700 - 28246821
Alignment:
Q  249 aaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccatcttttcaaacagaaaaataacatggag 348  Q
    |||||| |||| |||||||||| ||| ||| ||||||| || ||| |||||| |||||||| ||||||||||| ||| |||| || |||||||||||||     
T  28246700 aaatgagtggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaaattggaatccatttttacaaagagcaaaataacatggat 28246799  T
Q  349 gacattaaattcaccgatcctt 370  Q
    || ||| |||||||| ||||||    
T  28246800 gatattcaattcaccaatcctt 28246821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 591 - 685
Target Start/End: Original strand, 28247024 - 28247119
Alignment:
Q  591 cattcattggatgatattgtgaatgatgaattcaatgaccaccgtgtggacacaga--tatgtaaatatgtaattccaattctgtgtgcttatttat 685  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||  ||||| |   |||||||||| |||||  ||||||||||||||||||||    
T  28247024 cattcattggatgatattgtgaatgatgaa-tcaatgaccaccgtgtcaacacaaaataatgtaaatatctaattttaattctgtgtgcttatttat 28247119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 28239481 - 28239540
Alignment:
Q  9 ctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaatcagttg 68  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  28239481 ctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaatcagttg 28239540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 28246459 - 28246524
Alignment:
Q  9 ctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaatcagttgatacaa 74  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||| || |||||    
T  28246459 ctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaatcagctgctacaa 28246524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 678 - 731
Target Start/End: Complemental strand, 28247399 - 28247346
Alignment:
Q  678 ttatttatgttcttcaaatgatcgctctctccactttgagtgatgatctgttgc 731  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  28247399 ttatttatgttcttcaaatgatttctctctccactttgagttatgatctgttgc 28247346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 28191504 - 28191563
Alignment:
Q  9 ctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaatcagttg 68  Q
    |||||||||||||||||||||  |||||| | ||| ||||| ||||||||||||||||||    
T  28191504 ctttttggtttcgtaacaagctcccttcctttgctatctgtttttctactaaatcagttg 28191563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 28223878 - 28223920
Alignment:
Q  52 ttctactaaatcagttgatacaaccagtaatgattttgattta 94  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  28223878 ttctactaaatcagttgctacaatcagtaatgattttgattta 28223920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 499 - 544
Target Start/End: Original strand, 28239921 - 28239966
Alignment:
Q  499 caccattcataatagttccggccaatcacaagaccacccgttggtg 544  Q
    ||||| ||| |||||||| |||||||||||||||||||||||||||    
T  28239921 caccactcagaatagttcaggccaatcacaagaccacccgttggtg 28239966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 28525329 - 28525388
Alignment:
Q  9 ctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaatcagttg 68  Q
    ||||||||||||||||||| |  |||||||| ||||||||| |||||| ||||| |||||    
T  28525329 ctttttggtttcgtaacaacctcccttccattgctctctgtttttctaataaattagttg 28525388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 102; Significance: 4e-50; HSPs: 10)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 778 - 916
Target Start/End: Complemental strand, 47511 - 47367
Alignment:
Q  778 ttgctatccctcgaagattgagtgggaaaatgtagtattatagaattatacttgtcatttctgtggttagcccccattggtgttgtgtaccga------c 871  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |      |    
T  47511 ttgctatccctcgaagattgagtggaaaaatgtagtattatagaattatacttgtcatttctatggttagcccccattggtgttgtgtactaagaagtgc 47412  T
Q  872 acataatatgtttaaattgtcttatttgagtttatctaattatat 916  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  47411 acataatctgtttaaattgtcttatttgagtttatctaattatat 47367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 678 - 775
Target Start/End: Complemental strand, 47746 - 47649
Alignment:
Q  678 ttatttatgttcttcaaatgatcgctctctccactttgagtgatgatctgttgcatgatatgaaatacttctgaattatagttttcattacatacata 775  Q
    |||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47746 ttatttatgttctttaaatgattgctctctccactttgagttatgatctgttgcatgatatgaaatatttctgaattatagttttcattacatacata 47649  T

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Target: scaffold0038; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 249 - 370
Target Start/End: Original strand, 39872 - 39993
Alignment:
Q  249 aaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccatcttttcaaacagaaaaataacatggag 348  Q
    ||||||||||| |||||||||||||| ||  ||||||      || ||||||||||||||| ||||||||||| ||||||||||  |||||||||||||     
T  39872 aaatgaatggaatcatgcagaggttatatttgaacattcaaatgtggaaccactaacagaaattggaatccattttttcaaacacgaaaataacatggat 39971  T
Q  349 gacattaaattcaccgatcctt 370  Q
    |||||| |||||||| ||||||    
T  39972 gacattcaattcaccaatcctt 39993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 249 - 370
Target Start/End: Original strand, 46862 - 46983
Alignment:
Q  249 aaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccatcttttcaaacagaaaaataacatggag 348  Q
    |||||| |||| |||||||||| ||| ||| ||||||| || ||| |||||| |||||||| ||||||||||| ||| |||| || |||||||||||||     
T  46862 aaatgagtggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaaattggaatccatttttacaaagagcaaaataacatggat 46961  T
Q  349 gacattaaattcaccgatcctt 370  Q
    || ||| |||||||| ||||||    
T  46962 gatattcaattcaccaatcctt 46983  T

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Target: scaffold0038; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 591 - 685
Target Start/End: Original strand, 47186 - 47281
Alignment:
Q  591 cattcattggatgatattgtgaatgatgaattcaatgaccaccgtgtggacacaga--tatgtaaatatgtaattccaattctgtgtgcttatttat 685  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||  ||||| |   |||||||||| |||||  ||||||||||||||||||||    
T  47186 cattcattggatgatattgtgaatgatgaa-tcaatgaccaccgtgtcaacacaaaataatgtaaatatctaattttaattctgtgtgcttatttat 47281  T

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Target: scaffold0038; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 39643 - 39702
Alignment:
Q  9 ctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaatcagttg 68  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  39643 ctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaatcagttg 39702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 46621 - 46686
Alignment:
Q  9 ctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaatcagttgatacaa 74  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||| || |||||    
T  46621 ctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaatcagctgctacaa 46686  T

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Target: scaffold0038; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 678 - 731
Target Start/End: Complemental strand, 47561 - 47508
Alignment:
Q  678 ttatttatgttcttcaaatgatcgctctctccactttgagtgatgatctgttgc 731  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  47561 ttatttatgttcttcaaatgatttctctctccactttgagttatgatctgttgc 47508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 24376 - 24418
Alignment:
Q  52 ttctactaaatcagttgatacaaccagtaatgattttgattta 94  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  24376 ttctactaaatcagttgctacaatcagtaatgattttgattta 24418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 499 - 544
Target Start/End: Original strand, 40083 - 40128
Alignment:
Q  499 caccattcataatagttccggccaatcacaagaccacccgttggtg 544  Q
    ||||| ||| |||||||| |||||||||||||||||||||||||||    
T  40083 caccactcagaatagttcaggccaatcacaagaccacccgttggtg 40128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 70; Significance: 5e-31; HSPs: 4)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 249 - 370
Target Start/End: Complemental strand, 55071 - 54950
Alignment:
Q  249 aaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccatcttttcaaacagaaaaataacatggag 348  Q
    |||||||||||| ||||||||||||| ||| ||||||| |  ||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||     
T  55071 aaatgaatggatccatgcagaggttacatgtgaacatccgaaggtggaaccactaacagaaattggaatccattttttcaaacagaaaaataacatggat 54972  T
Q  349 gacattaaattcaccgatcctt 370  Q
    || ||| |||||||| ||||||    
T  54971 gatattcaattcaccaatcctt 54950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 55309 - 55240
Alignment:
Q  9 ctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaatcagttgatacaaccag 78  Q
    |||||||||||||||||||||  ||||||| |||||||| | |||||||||||||||||| |||| ||||    
T  55309 ctttttggtttcgtaacaagctcccttccacggctctctttttttctactaaatcagttgctacatccag 55240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 607 - 685
Target Start/End: Complemental strand, 54767 - 54688
Alignment:
Q  607 ttgtgaatgatgaattcaatgaccaccgtgtggacacagatatg-taaatatgtaattccaattctgtgtgcttatttat 685  Q
    ||||||||||||||||||| |||||| ||||  ||||  ||||  |||||||||||||  ||||||||||||||||||||    
T  54767 ttgtgaatgatgaattcaacgaccacggtgtcaacactcatattataaatatgtaattttaattctgtgtgcttatttat 54688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 499 - 544
Target Start/End: Complemental strand, 54830 - 54785
Alignment:
Q  499 caccattcataatagttccggccaatcacaagaccacccgttggtg 544  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||||    
T  54830 caccattcacaatagttcaggccaatcacaagaccacccattggtg 54785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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