View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5934-Insertion-5 (Length: 643)
Name: NF5934-Insertion-5
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5934-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 9 - 559
Target Start/End: Complemental strand, 43062753 - 43062205
Alignment:
| Q |
9 |
gattcaattacgattccttcaaaaaggtaaactaataaatataggagtgaaagaaagtccctatgatcagtactcatccaaatttatcttcaagaccaca |
108 |
Q |
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| T |
43062753 |
gattcaattacgattccttcaaaaaggtaaactaataaatataggagtgaaagaaagtccctatgatcagtactcatccaaatttatcttcaagaccaca |
43062654 |
T |
|
| Q |
109 |
tttcttttcaaattttgcaaagttggaagcatgtcacaaaaatgcttgtgagaaaagttaagtgataatcgagtgcgaaagacnnnnnnnnngggtagtg |
208 |
Q |
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| T |
43062653 |
tttcttttcaaattttgcaaagttggaagcatgtcacaaaaatgcttgtgagaaaagttaagtgataatcaagtgcgaaagacaaaaaaa--gggtagtg |
43062556 |
T |
|
| Q |
209 |
ttaggaaggactataataacgcattaactactataactgatgtcatatttcataacggttacataacttcggctcagactcttttggataaatggtcttt |
308 |
Q |
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| T |
43062555 |
ttaggaaggactataataacgcattaactactataactgatgtcatatttcataacggttacataacttcggctcagactcttttggataaatggtcttt |
43062456 |
T |
|
| Q |
309 |
ttcctagcataattttgacagttaataacctatgcccgaatacagaaaccaaatagcagattgtaacgtaaagaagttaagacaacattatgcaatacag |
408 |
Q |
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| T |
43062455 |
ttcctagcaaaattttgatagttaataacctatgcccgaatacagaaaccaaatagcagattgtaacgtaaagaagttaagacaacattatgcaatacag |
43062356 |
T |
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| Q |
409 |
aggtcagtaatacgaatcagtgacaaaaaacattggaaatcggaactagattttatgaaaaaacagatcaacatatcaaagcaatatggaaggttgcatg |
508 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43062355 |
aggtcaataatacgaatcagtgacaaaaaacattggaaatcggaactagattttatgaaaaaacagatcaacatatcaaagcaatatggaaggttgcatg |
43062256 |
T |
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| Q |
509 |
actcctatgatcttttgggagctctgataccagtgtgttactacgtatttc |
559 |
Q |
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| T |
43062255 |
actcctatgatcttttgggagctctgataccagtgtgttgctacgtatttc |
43062205 |
T |
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