View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5934-Insertion-6 (Length: 491)

Name: NF5934-Insertion-6
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5934-Insertion-6
NF5934-Insertion-6
[»] chr1 (1 HSPs)
chr1 (9-491)||(46736611-46737081)


Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 9 - 491
Target Start/End: Complemental strand, 46737081 - 46736611
Alignment:
Q  9 catacatggttttctatgagcaacaacatcccctgttgatatagcattcatccacgttctgttcaaaaaacaattgctccttttatcccatagcacacat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46737081 catacatggttttctatgagcaacaacatcccctgttgatatagcattcatccacgttctgttcaaaaaacaattgctccttttatcccatagcacacat 46736982  T
Q  109 ccaatctctcaaacaacaaaacaagagatatcaatgctcatgagtcatgaatgcatagacgacacattgagtatcccataaatcaatgactcacaatacc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46736981 ccaatctctcaaacaacaaaacaagagatatcaatgctcatgagtcatgaatgcatagacgacacattgagtatcccataaatcaatgactcacaatacc 46736882  T
Q  209 agcaagcaacacaatactagttcaatatctttttcaatatctaatatagaatatatatgaagtcaactagtaaattgacaagcaagccaacaaatgacag 308  Q
    ||||||||||||||||||||||||||||||            |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46736881 agcaagcaacacaatactagttcaatatct------------aatataaaatatatatgaagtcaaccagtaaattgacaagcaagccaacaaatgacag 46736794  T
Q  309 ttgaaggctgcaacatacctccgatatttccatagacaacaactccgatatttccataaacgacaatgacttacttaatgtacataataatactcattaa 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  46736793 ttgaaggctgcaacatacctccgatatttccatagacaacaactccgatatttccatagacgacaatgacttacttaatgtacataattatactcattaa 46736694  T
Q  409 aaattgagtatgactattatgggccacgagcaggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcct 491  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46736693 aaattgagtatgattattatgggccacgagcaggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcct 46736611  T

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