View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5934-Insertion-7 (Length: 440)
Name: NF5934-Insertion-7
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5934-Insertion-7 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 16225131 - 16224694
Alignment:
| Q |
11 |
tacaacaaccaataactagtttaaagtgttcaaacaacataattgaaatcactttgttgaaaactaacatgaaccaaatagaaactatcctagcaattat |
110 |
Q |
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| T |
16225131 |
tacaacaaccaataactagtttaaagtgttcaaacaacataattgaaatcactttgttgaaaactaacatgaaccaaatagaaactatcctagcaattat |
16225032 |
T |
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| Q |
111 |
aacttgatcttcacaacagccgcaaagtacagtggttaccaataggcaataagaatagggtttagggattata----gggctcacagaaattcattttca |
206 |
Q |
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| T |
16225031 |
aacttgatcttcacaacagccgcaaagtacagtgggtaccaataggcaataaacatagggtttagggtttatatatagggctcacagaaattccttttca |
16224932 |
T |
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| Q |
207 |
atcttcttatattccaaagtagtagtatcacacaaaataa----acataattgataacctatggagtggaaaaatagaaggtataagattttaaaaacat |
302 |
Q |
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| T |
16224931 |
atcttcttatattccaaagtagtagaatcacacaaaataataatacttaattgataacctatggaggggaaaaatagaaggtttaagattttaaaaacat |
16224832 |
T |
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| Q |
303 |
gttgcaaatataaaattaattcatgttatgcaccggtatttatgactgtgactgcagtttaaacccttgatccttcttgctcaatggcctcggcaccttc |
402 |
Q |
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| T |
16224831 |
gttgcaaatataaaattaattcatgttatgcaccggtatttatgactgtgactgcagtttaaacccttgatccttcttgctcagtggcctcggcaccttc |
16224732 |
T |
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| Q |
403 |
tccctcattctctccacttaactcttccaacgattttc |
440 |
Q |
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| T |
16224731 |
tccctcattctctccacttaactcttccaacgattttc |
16224694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 16185371 - 16185304
Alignment:
| Q |
373 |
tccttcttgctcaatggcctcggcaccttctccctcattctctccacttaactcttccaacgattttc |
440 |
Q |
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| T |
16185371 |
tccttcttgttcagtggcctcggcaccttctccctcgttctctccactcaactcttccaacgattttc |
16185304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 440
Target Start/End: Original strand, 16173956 - 16174058
Alignment:
| Q |
338 |
gtatttatgactgtgactgcagtttaaacccttgatccttcttgctcaatggcctcggcaccttctccctcattctctccacttaactcttccaacgatt |
437 |
Q |
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| T |
16173956 |
gtattcatgactgtgagcacagtttaaacccccgatccttcttgccgagtgtcctcaacactttctccttcattctctccactcaactcttccaatgatt |
16174055 |
T |
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| Q |
438 |
ttc |
440 |
Q |
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| T |
16174056 |
ttc |
16174058 |
T |
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