View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5934-Insertion-9 (Length: 407)
Name: NF5934-Insertion-9
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5934-Insertion-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 54 - 407
Target Start/End: Complemental strand, 50707295 - 50706940
Alignment:
| Q |
54 |
acttctttgaaagaattgaagcttaatttagatgcatctttgcaagggaaagagattcacatgaattcatgttcctcgtcaacttccaatattatataac |
153 |
Q |
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| T |
50707295 |
acttctttgaaaaaattgaagcttaatttagatgcatctttgcaagggaaagagattcacatgaattcatgttcctcgtcaacttccaatattatataac |
50707196 |
T |
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| Q |
154 |
tattcaatcttcaataacactacaaacaggtgtgataggaggagaggtcttagtagcagtgctagnnnnnnnnnnnnnnn---agagaaaagataatagt |
250 |
Q |
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| T |
50707195 |
tattcaatcttcaataacactacaaacaggtgtgataggaagagaggtcttagtagtagtgctagttttttttttttttttttagagaaaagataatagt |
50707096 |
T |
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| Q |
251 |
agtgctagttttatggttcctgattttggacactataggcatgaattgctatattagttttggttgggtgggtagcatatttcaatttgtttaaagtttt |
350 |
Q |
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| T |
50707095 |
agtgctagttttatggttcctgattttggacactataggcatgaattgctatattagttttggttgggt-agtagcatatttcaatttgtttaaagtttt |
50706997 |
T |
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| Q |
351 |
ttcgtatgttcgatgtcaacattctcttcaaaaataaaatatattatgtgtttatgt |
407 |
Q |
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| T |
50706996 |
ttcgtatgttcgatgtcaacattctctttaaaaataaaatatattatgtgtttatgt |
50706940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 8167225 - 8167179
Alignment:
| Q |
54 |
acttctttgaaagaattgaagcttaatttagatgcatctttgcaagg |
100 |
Q |
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| T |
8167225 |
acttctttggtaaaattgaagcttaatttagatgcatccttgcaagg |
8167179 |
T |
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